version 1.0
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759 1354 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 513 30.45 0 504997..506208 + 403 71083222 lysC SAR11_0516 - aspartate kinase 514 31.52 0 506212..507312 + 366 71083223 ispG SAR11_0517 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 515 32.40 0 507318..508391 + 357 71083224 prfA SAR11_0518 - protein release factor class I 516 25.86 0 508393..509235 + 280 71083225 hemK SAR11_0519 - hypothetical protein 517 29.77 0 509250..509726 + 158 71083226 - SAR11_0520 - hypothetical protein 518 25.87 0 509729..511027 - 432 71083227 yebA SAR11_0521 - M23/M37 peptidase 519 23.03 -1 516442..516975 + 177 71083228 - SAR11_0523 - glucose-6-phosphate isomerase-like protein 520 22.37 -1 516956..517402 + 148 71083229 - SAR11_0524 - hypothetical protein 521 22.34 -1 517419..518273 + 284 71083230 - SAR11_0525 - NAD-dependent epimerase/dehydratase family protein 522 23.61 -1 518270..519133 - 287 71083231 - SAR11_0526 - NAD-dependent epimerase/dehydratase family protein 523 27.86 0 519133..520869 - 578 71083232 - SAR11_0527 - acetolactate synthase II large chain 524 28.03 0 520922..521581 + 219 71083233 smtA SAR11_0528 - protein-L-isoaspartate(D-aspartate) O-methyltransferase 525 25.36 0 521587..522627 + 346 71083234 - SAR11_0529 - zinc-containing alcohol dehydrogenase 526 22.25 -1 522650..523831 + 393 71083235 - SAR11_0530 - cyclopropane-fatty-acyl-phospholipid synthase 527 30.64 0 523831..524610 + 259 71083236 - SAR11_0531 - FabG-like protein 528 20.51 -2 524613..525977 - 454 71083237 - SAR11_0532 - FAD oxidase family protein 529 20.28 -2 526036..526809 - 257 71083238 - SAR11_0533 - methyltransferase 530 23.19 -1 526790..528139 + 449 71083239 - SAR11_0534 - aminotransferase 531 17.59 -2 528210..529664 - 484 71083240 - SAR11_0535 - deoxynucleotidase 532 25.38 0 529658..530587 - 309 71083241 tktC SAR11_0536 - transketolase family protein 533 28.54 0 530587..531378 - 263 71083242 tktN SAR11_0537 - transketolase 534 25.03 -1 531418..532356 + 312 71083243 - SAR11_0538 - UDP-glucose 4 epimerase 535 24.85 -1 532349..533857 + 502 71083244 rfaE SAR11_0539 - cytidylyltransferase/carbohydrate (or pyrimidine) kinase 536 21.16 -1 533858..534580 + 240 71083245 spsA SAR11_0540 - spsA-like glycosyl transferase 537 24.04 -1 534588..535577 + 329 71083246 rfbB SAR11_0541 - dtdpglucose 4,6-dehydratase 538 17.70 -2 535581..537269 - 562 71083247 - SAR11_0542 - unknown membrane protein 539 14.25 -2 537246..537701 + 151 71083248 - SAR11_0543 - unknown membrane protein 540 15.15 -2 537702..538163 + 153 71083249 - SAR11_0544 - unknown membrane protein 541 23.99 -1 538166..538732 + 188 71083250 gmhA SAR11_0545 - phosphoheptose isomerase 542 22.76 -1 538725..539216 - 163 71083251 gmhB SAR11_0546 - D-glycero-D-manno-heptose 1,7 bisphophate phosphatase 543 20.91 -2 539250..540239 - 329 71083252 - SAR11_0547 - D amino acid oxidase (DAO) family protein 544 23.56 -1 540307..541656 - 449 71083253 - SAR11_0548 - unknown membrane protein 545 20.30 -2 541643..542854 - 403 71083254 - SAR11_0549 - unknown membrane protein 546 23.72 -1 543013..544125 - 370 71083255 rfaG SAR11_0550 - glycosyl transferase family protein 547 19.18 -2 544167..545240 - 357 71083256 - SAR11_0551 - glycosyl transferase family protein 548 23.50 -1 545259..546092 + 277 71083257 lgtF SAR11_0552 - spsA-like protein 549 27.84 0 546079..547206 + 375 71083258 - SAR11_0553 - DegT/DnrJ/EryC1/StrS aminotransferase 550 25.84 0 547210..548943 + 577 71083259 - SAR11_0554 - carbamoyltransferase 551 19.61 -2 548924..549535 + 203 71083260 - SAR11_0555 - CMAS family protein 552 21.25 -1 549536..550669 - 377 71083261 - SAR11_0556 - glycosyl transferase 553 20.35 -2 550866..551843 + 325 71083262 - SAR11_0557 - glycosyl transferase family protein 554 23.22 -1 551827..552528 + 233 71083263 - SAR11_0558 - cyclopropane-fatty-acyl-phospholipid 555 22.22 -1 552525..553595 - 356 71083264 rfaK SAR11_0559 - 1,2-N-acetylglucosaminetransferase 556 24.68 -1 553607..554311 + 234 71083265 - SAR11_0560 - PCMT - protein-L-isoaspartate(D-aspartate) O-methyltransferase 557 17.14 -2 554312..555052 + 246 71083266 - SAR11_0561 - oxidoreductase family protein 558 21.22 -1 555224..555991 - 255 71083267 wbyL SAR11_0563 - glycosyl transferase 559 23.81 -1 555992..556138 - 48 71083268 - SAR11_1726 - hypothetical protein 560 28.57 0 556146..556334 - 62 71083269 - SAR11_0564 - putative reductase 561 26.78 0 556386..556751 + 121 71083270 - SAR11_0565 - hypothetical protein 562 21.84 -1 556732..558045 + 437 71083271 - SAR11_0566 - O-antigen polymerase 563 19.66 -2 558028..559029 - 333 71083272 - SAR11_0567 - hypothetical protein 564 23.05 -1 559270..560484 + 404 71083273 - SAR11_0568 - D-amino acid oxidoreductase family protein 565 22.99 -1 560488..561444 + 318 71083274 galE SAR11_0569 - UDP-glucose 4-epimerase 566 29.79 0 561627..562670 + 347 71083275 gmd SAR11_0570 - gdpmannose 4,6-dehydratase 567 25.03 -1 562663..563601 + 312 71083276 wcaG SAR11_0571 - GDP-fucose synthetase chain A 568 24.80 -1 563601..564479 + 292 71083277 rfaD SAR11_0572 - ADP-L-glycero-D-mannoheptose-6-epimerase 569 25.40 0 564660..564785 + 41 71083278 rpmJ SAR11_0573 - ribosomal protein L36 570 28.93 0 564911..565999 + 362 71083279 pntA SAR11_0574 - alanine dehydrogenase/PNT 571 30.10 0 566004..566312 + 102 71083280 pntAB SAR11_0575 - NAD(P) transhydrogenase subunit alpha part 2 572 34.19 +1 566315..567709 + 464 71083281 pntB SAR11_0576 - NAD(p) transhydrogenase subunit beta 573 28.76 0 567715..568413 + 232 71083282 tal SAR11_0577 - putative translaldolase 574 21.03 -2 568515..568709 - 64 71083283 rpsU SAR11_0578 - 30S ribosomal protein S21 575 30.85 0 568765..569328 - 187 71083284 - SAR11_0579 - hypothetical protein 576 34.20 +1 569353..569583 - 76 71083285 rpmE SAR11_0580 - 50S ribosomal protein L31 577 31.04 0 569619..570359 - 246 71083286 suhB SAR11_0581 - extragenic suppressor protein suhB 578 29.59 0 570365..570925 - 186 71083287 efp SAR11_0582 - elongation factor P (EF-P) 579 24.04 -1 570922..571545 - 207 71083288 thiE SAR11_0583 - thiamine-phosphate pyrophosphorylase 580 33.33 0 571532..572542 - 336 71083289 fbaB SAR11_0584 - fructose-bisphosphate aldolase 581 27.14 0 572544..573722 - 392 71083290 pgk SAR11_0585 - phosphoglycerate kinase 582 30.46 0 573722..574729 - 335 71083291 gap SAR11_0586 - glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) 583 31.09 0 574732..576690 - 652 71083292 tktB SAR11_0587 - transketolase 584 22.84 -1 576744..577067 + 107 71083293 yqgN SAR11_0588 - 5-formyltetrahydrofolate cyclo-ligase-like protein 585 25.73 0 577055..577501 + 148 71083294 - SAR11_0589 - hypothetical protein 586 23.86 -1 577506..578054 + 182 71083295 - SAR11_0590 - 5-formyltetrahydrofolate cyclo-ligase 587 31.23 0 578051..578857 + 268 71083296 - SAR11_0591 - hypothetical protein 588 29.61 0 578863..579588 + 241 71083297 - SAR11_0592 - hypothetical protein 589 29.29 0 579588..580082 + 164 71083298 ruvC SAR11_0593 - crossover junction endodeoxyribonuclease 590 30.96 0 580136..580810 + 224 71083299 tolQ SAR11_0594 - inner membrane protein TolQ 591 31.18 0 580812..581228 + 138 71083300 tolR SAR11_0595 - tolR protein 592 30.74 0 581234..582043 + 269 71083301 tolA SAR11_0596 - TolA protein 593 31.10 0 582046..583386 + 446 71083302 tolB SAR11_0597 - translocation protein TolB 594 32.29 0 583474..583953 + 159 71083303 ompA SAR11_0598 - OmpA family protein 595 29.74 0 584040..585014 + 324 71083304 - SAR11_0599 - hypothetical protein 596 24.16 -1 585136..586029 + 297 71083305 mesJ SAR11_0600 - cell cycle protein mesj 597 35.61 +1 586081..587967 + 628 71083306 ftsH SAR11_0601 - metalloprotease FtsH 598 24.98 -1 587974..589026 + 350 71083307 folP SAR11_0602 - dihydropteroate synthase-like protein 599 28.23 0 589026..590357 + 443 71083308 mrsA SAR11_0603 - phosphoglucomutase/phosphomannomutase family protein MrsA 600 29.40 0 590359..591171 + 270 71083309 thiD SAR11_0604 - phosphomethylpyrimidine kinase 601 33.49 +1 591171..592463 + 430 71083310 adsS SAR11_0605 - adenylosuccinate synthetase 602 31.52 0 592460..593341 - 293 71083311 rpoH SAR11_0606 - RNA polymerase factor sigma-32 603 29.05 0 593396..594376 - 326 71083312 sfhB SAR11_0607 - pseudouridylate synthase 604 28.72 0 594493..595425 - 310 71083313 - SAR11_0608 - Sua5/YciO/YrdC family protein 605 21.95 -1 595446..595691 + 81 71083314 - SAR11_0609 - exonuclease VII small subunit 606 27.31 0 595774..596553 + 259 71083315 ispA SAR11_0610 - geranyltranstransferase 607 33.80 +1 596553..598466 + 637 71083316 dxs SAR11_0611 - 1-deoxy-D-xylulose-5-phosphate synthase 608 33.80 +1 598475..599557 - 360 71083317 aroC SAR11_0612 - chorismate synthase 609 29.98 0 599591..600217 + 208 71083318 pdxH SAR11_0613 - pyridoxamine-phosphate oxidase 610 29.39 0 600214..601227 - 337 71083319 ispB SAR11_0614 - octaprenyl-diphosphate synthase 611 31.97 0 601340..602146 + 268 71083320 sohB SAR11_0615 - S49 family peptidase 612 32.99 0 602136..603020 + 294 71083321 glyQ SAR11_0616 - glycyl-tRNA synthetase subunit alpha 29.30 MEAN 4.13 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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