IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
476	 27.26	0	468623..469675	+	350	71083185	hisZ	SAR11_0479	-	ATP phosphoribosyltransferase regulatory subunit
477	 28.55	0	469675..470364	+	229	71083186	hisG	SAR11_0480	-	ATP phosphoribosyltransferase catalytic subunit
478	 32.06	0	470546..471643	+	365	71083187	rmuC	SAR11_0481	-	DNA recombination protein
479	 32.71	0	471726..472370	+	214	71083188	-	SAR11_0482	-	hypothetical protein
480	 31.65	0	472372..473799	+	475	71083189	sbcB	SAR11_0483	-	exodeoxyribonuclease I
481	 33.96	+1	473875..474192	+	105	71083190	trxA	SAR11_0484	-	thioredoxin 1
482	 27.74	0	474189..475457	-	422	71083191	folC	SAR11_0485	-	FolC bifunctional protein (folylpolyglutamate synthase/dihydrofolate synthase)
483	 33.55	+1	475411..476340	-	309	71083192	accD	SAR11_0486	-	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
484	 28.70	0	476337..477134	-	265	71083193	trpA	SAR11_0487	-	tryptophan synthase subunit alpha
485	 33.74	+1	477136..478368	-	410	71083194	trpB	SAR11_0488	-	tryptophan synthase subunit beta
486	 25.40	0	478358..478987	-	209	71083195	trpF	SAR11_0489	-	N-(5'-phosphoribosyl)anthranilate isomerase
487	 27.85	0	478984..479676	-	230	71083196	pyrF	SAR11_0490	-	orotidine 5'-phosphate decarboxylase
488	 28.87	0	479666..479956	-	96	71083197	himD	SAR11_0491	-	integration host factor beta-subunit (IHF-beta)
489	 30.62	0	479960..481690	-	576	71083198	rpsA	SAR11_0492	-	30S ribosomal protein S1
490	 26.45	0	481690..482343	-	217	71083199	cmk	SAR11_0493	-	cytidylate kinase
491	 26.85	0	482340..483527	-	395	71083200	aroA	SAR11_0494	-	3-phosphoshikimate 1-carboxyvinyltransferase
492	 30.37	0	483672..484448	-	258	71083201	yhbG	SAR11_0495	-	sulfate/thiosulfate import ATP-binding protein cysA
493	 25.64	0	484450..485034	-	194	71083202	-	SAR11_0496	-	hypothetical protein
494	 28.19	0	485035..486006	-	323	71083203	gutQ	SAR11_0497	-	arabinose 5-phosphate isomerase
495	 29.74	0	486007..486618	-	203	71083204	rnd	SAR11_0498	-	ribonuclease D
496	 28.59	0	486635..487603	+	322	71083205	-	SAR11_0499	-	NADH-ubiquinone oxireductase
497	 31.94	0	487775..488275	-	166	71083206	-	SAR11_0500	-	hypothetical protein
498	 29.48	0	488408..489211	+	267	71083207	-	SAR11_0501	-	YadH-like ABC-2-type transport protein
499	 28.79	0	489215..490381	+	388	71083208	argD	SAR11_0502	-	acetylornithine aminotransferase
500	 28.39	0	490384..491313	+	309	71083209	argF	SAR11_0503	-	ornithine carbamoyltransferase
501	 36.11	+1	491305..491844	-	179	71083210	cycM	SAR11_0504	-	cytochrome C
502	 27.26	0	491948..492688	+	246	71083211	kdsB	SAR11_0505	-	3-deoxy-manno-octulosonate cytidylyltransferase
503	 30.32	0	492690..493520	+	276	71083212	pheA	SAR11_0506	-	prephenate dehydratase
504	 26.94	0	493665..495338	+	557	71083213	dnaX	SAR11_0507	-	DNA-directed DNA polymerase gamma/tau subunit
505	 29.56	0	495342..495659	+	105	71083214	ybaB	SAR11_0508	-	hypothetical protein
506	 30.07	0	495664..496275	+	203	71083215	recR	SAR11_0509	-	recR-like protein
507	 31.83	0	496262..498457	-	731	71083216	glcB	SAR11_0510	-	malate synthase G
508	 31.26	0	498707..499813	+	368	71083217	accA	SAR11_0511	-	acetyl-CoA carboxylase
509	 28.81	0	499808..502372	-	854	71083218	secA	SAR11_0512	-	preprotein translocase secA
510	 27.58	0	502576..503739	+	387	71083219	argJ	SAR11_0513	-	ArgJ family protein
511	 26.85	0	503781..504212	+	143	71083220	-	SAR11_0514	-	hypothetical protein
512	 25.03	-1	504209..504931	-	240	71083221	ubiG	SAR11_0515	-	3-demethylubiquinone-9 3-methyltransferase
513	 30.45	0	504997..506208	+	403	71083222	lysC	SAR11_0516	-	aspartate kinase
514	 31.52	0	506212..507312	+	366	71083223	ispG	SAR11_0517	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
515	 32.40	0	507318..508391	+	357	71083224	prfA	SAR11_0518	-	protein release factor class I
516	 25.86	0	508393..509235	+	280	71083225	hemK	SAR11_0519	-	hypothetical protein
517	 29.77	0	509250..509726	+	158	71083226	-	SAR11_0520	-	hypothetical protein
518	 25.87	0	509729..511027	-	432	71083227	yebA	SAR11_0521	-	M23/M37 peptidase
519	 23.03	-1	516442..516975	+	177	71083228	-	SAR11_0523	-	glucose-6-phosphate isomerase-like protein
520	 22.37	-1	516956..517402	+	148	71083229	-	SAR11_0524	-	hypothetical protein
521	 22.34	-1	517419..518273	+	284	71083230	-	SAR11_0525	-	NAD-dependent epimerase/dehydratase family protein
522	 23.61	-1	518270..519133	-	287	71083231	-	SAR11_0526	-	NAD-dependent epimerase/dehydratase family protein
523	 27.86	0	519133..520869	-	578	71083232	-	SAR11_0527	-	acetolactate synthase II large chain
524	 28.03	0	520922..521581	+	219	71083233	smtA	SAR11_0528	-	protein-L-isoaspartate(D-aspartate) O-methyltransferase
525	 25.36	0	521587..522627	+	346	71083234	-	SAR11_0529	-	zinc-containing alcohol dehydrogenase
526	 22.25	-1	522650..523831	+	393	71083235	-	SAR11_0530	-	cyclopropane-fatty-acyl-phospholipid synthase
527	 30.64	0	523831..524610	+	259	71083236	-	SAR11_0531	-	FabG-like protein
528	 20.51	-2	524613..525977	-	454	71083237	-	SAR11_0532	-	FAD oxidase family protein
529	 20.28	-2	526036..526809	-	257	71083238	-	SAR11_0533	-	methyltransferase
530	 23.19	-1	526790..528139	+	449	71083239	-	SAR11_0534	-	aminotransferase
531	 17.59	-2	528210..529664	-	484	71083240	-	SAR11_0535	-	deoxynucleotidase
532	 25.38	0	529658..530587	-	309	71083241	tktC	SAR11_0536	-	transketolase family protein
533	 28.54	0	530587..531378	-	263	71083242	tktN	SAR11_0537	-	transketolase
534	 25.03	-1	531418..532356	+	312	71083243	-	SAR11_0538	-	UDP-glucose 4 epimerase
535	 24.85	-1	532349..533857	+	502	71083244	rfaE	SAR11_0539	-	cytidylyltransferase/carbohydrate (or pyrimidine) kinase
536	 21.16	-1	533858..534580	+	240	71083245	spsA	SAR11_0540	-	spsA-like glycosyl transferase
537	 24.04	-1	534588..535577	+	329	71083246	rfbB	SAR11_0541	-	dtdpglucose 4,6-dehydratase
538	 17.70	-2	535581..537269	-	562	71083247	-	SAR11_0542	-	unknown membrane protein
539	 14.25	-2	537246..537701	+	151	71083248	-	SAR11_0543	-	unknown membrane protein
540	 15.15	-2	537702..538163	+	153	71083249	-	SAR11_0544	-	unknown membrane protein
541	 23.99	-1	538166..538732	+	188	71083250	gmhA	SAR11_0545	-	phosphoheptose isomerase
542	 22.76	-1	538725..539216	-	163	71083251	gmhB	SAR11_0546	-	D-glycero-D-manno-heptose 1,7 bisphophate phosphatase
543	 20.91	-2	539250..540239	-	329	71083252	-	SAR11_0547	-	D amino acid oxidase (DAO) family protein
544	 23.56	-1	540307..541656	-	449	71083253	-	SAR11_0548	-	unknown membrane protein
545	 20.30	-2	541643..542854	-	403	71083254	-	SAR11_0549	-	unknown membrane protein
546	 23.72	-1	543013..544125	-	370	71083255	rfaG	SAR11_0550	-	glycosyl transferase family protein
547	 19.18	-2	544167..545240	-	357	71083256	-	SAR11_0551	-	glycosyl transferase family protein
548	 23.50	-1	545259..546092	+	277	71083257	lgtF	SAR11_0552	-	spsA-like protein
549	 27.84	0	546079..547206	+	375	71083258	-	SAR11_0553	-	DegT/DnrJ/EryC1/StrS aminotransferase
550	 25.84	0	547210..548943	+	577	71083259	-	SAR11_0554	-	carbamoyltransferase
551	 19.61	-2	548924..549535	+	203	71083260	-	SAR11_0555	-	CMAS family protein
552	 21.25	-1	549536..550669	-	377	71083261	-	SAR11_0556	-	glycosyl transferase
553	 20.35	-2	550866..551843	+	325	71083262	-	SAR11_0557	-	glycosyl transferase family protein
554	 23.22	-1	551827..552528	+	233	71083263	-	SAR11_0558	-	cyclopropane-fatty-acyl-phospholipid
555	 22.22	-1	552525..553595	-	356	71083264	rfaK	SAR11_0559	-	1,2-N-acetylglucosaminetransferase
556	 24.68	-1	553607..554311	+	234	71083265	-	SAR11_0560	-	PCMT - protein-L-isoaspartate(D-aspartate) O-methyltransferase
557	 17.14	-2	554312..555052	+	246	71083266	-	SAR11_0561	-	oxidoreductase family protein
558	 21.22	-1	555224..555991	-	255	71083267	wbyL	SAR11_0563	-	glycosyl transferase
559	 23.81	-1	555992..556138	-	48	71083268	-	SAR11_1726	-	hypothetical protein
560	 28.57	0	556146..556334	-	62	71083269	-	SAR11_0564	-	putative reductase
561	 26.78	0	556386..556751	+	121	71083270	-	SAR11_0565	-	hypothetical protein
562	 21.84	-1	556732..558045	+	437	71083271	-	SAR11_0566	-	O-antigen polymerase
563	 19.66	-2	558028..559029	-	333	71083272	-	SAR11_0567	-	hypothetical protein
564	 23.05	-1	559270..560484	+	404	71083273	-	SAR11_0568	-	D-amino acid oxidoreductase family protein
565	 22.99	-1	560488..561444	+	318	71083274	galE	SAR11_0569	-	UDP-glucose 4-epimerase
566	 29.79	0	561627..562670	+	347	71083275	gmd	SAR11_0570	-	gdpmannose 4,6-dehydratase
567	 25.03	-1	562663..563601	+	312	71083276	wcaG	SAR11_0571	-	GDP-fucose synthetase chain A
568	 24.80	-1	563601..564479	+	292	71083277	rfaD	SAR11_0572	-	ADP-L-glycero-D-mannoheptose-6-epimerase
569	 25.40	0	564660..564785	+	41	71083278	rpmJ	SAR11_0573	-	ribosomal protein L36
570	 28.93	0	564911..565999	+	362	71083279	pntA	SAR11_0574	-	alanine dehydrogenase/PNT
571	 30.10	0	566004..566312	+	102	71083280	pntAB	SAR11_0575	-	NAD(P) transhydrogenase subunit alpha part 2
572	 34.19	+1	566315..567709	+	464	71083281	pntB	SAR11_0576	-	NAD(p) transhydrogenase subunit beta
573	 28.76	0	567715..568413	+	232	71083282	tal	SAR11_0577	-	putative translaldolase
574	 21.03	-2	568515..568709	-	64	71083283	rpsU	SAR11_0578	-	30S ribosomal protein S21
575	 30.85	0	568765..569328	-	187	71083284	-	SAR11_0579	-	hypothetical protein
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.