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Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759 1354 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 471 24.75 -1 464651..465046 + 131 71083180 - SAR11_0474 - hypothetical protein 472 29.68 0 465046..466332 + 428 71083181 hisD SAR11_0475 - histidinol dehydrogenase 473 36.57 +1 466335..466550 + 71 71083182 infA SAR11_0476 - translation initiation factor IF-1 474 36.15 +1 466720..466932 + 70 71083183 cspE SAR11_0477 - cold shock protein 475 29.26 0 467248..468645 + 465 71083184 hisS SAR11_0478 - histidyl-tRNA synthetase 476 27.26 0 468623..469675 + 350 71083185 hisZ SAR11_0479 - ATP phosphoribosyltransferase regulatory subunit 477 28.55 0 469675..470364 + 229 71083186 hisG SAR11_0480 - ATP phosphoribosyltransferase catalytic subunit 478 32.06 0 470546..471643 + 365 71083187 rmuC SAR11_0481 - DNA recombination protein 479 32.71 0 471726..472370 + 214 71083188 - SAR11_0482 - hypothetical protein 480 31.65 0 472372..473799 + 475 71083189 sbcB SAR11_0483 - exodeoxyribonuclease I 481 33.96 +1 473875..474192 + 105 71083190 trxA SAR11_0484 - thioredoxin 1 482 27.74 0 474189..475457 - 422 71083191 folC SAR11_0485 - FolC bifunctional protein (folylpolyglutamate synthase/dihydrofolate synthase) 483 33.55 +1 475411..476340 - 309 71083192 accD SAR11_0486 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta 484 28.70 0 476337..477134 - 265 71083193 trpA SAR11_0487 - tryptophan synthase subunit alpha 485 33.74 +1 477136..478368 - 410 71083194 trpB SAR11_0488 - tryptophan synthase subunit beta 486 25.40 0 478358..478987 - 209 71083195 trpF SAR11_0489 - N-(5'-phosphoribosyl)anthranilate isomerase 487 27.85 0 478984..479676 - 230 71083196 pyrF SAR11_0490 - orotidine 5'-phosphate decarboxylase 488 28.87 0 479666..479956 - 96 71083197 himD SAR11_0491 - integration host factor beta-subunit (IHF-beta) 489 30.62 0 479960..481690 - 576 71083198 rpsA SAR11_0492 - 30S ribosomal protein S1 490 26.45 0 481690..482343 - 217 71083199 cmk SAR11_0493 - cytidylate kinase 491 26.85 0 482340..483527 - 395 71083200 aroA SAR11_0494 - 3-phosphoshikimate 1-carboxyvinyltransferase 492 30.37 0 483672..484448 - 258 71083201 yhbG SAR11_0495 - sulfate/thiosulfate import ATP-binding protein cysA 493 25.64 0 484450..485034 - 194 71083202 - SAR11_0496 - hypothetical protein 494 28.19 0 485035..486006 - 323 71083203 gutQ SAR11_0497 - arabinose 5-phosphate isomerase 495 29.74 0 486007..486618 - 203 71083204 rnd SAR11_0498 - ribonuclease D 496 28.59 0 486635..487603 + 322 71083205 - SAR11_0499 - NADH-ubiquinone oxireductase 497 31.94 0 487775..488275 - 166 71083206 - SAR11_0500 - hypothetical protein 498 29.48 0 488408..489211 + 267 71083207 - SAR11_0501 - YadH-like ABC-2-type transport protein 499 28.79 0 489215..490381 + 388 71083208 argD SAR11_0502 - acetylornithine aminotransferase 500 28.39 0 490384..491313 + 309 71083209 argF SAR11_0503 - ornithine carbamoyltransferase 501 36.11 +1 491305..491844 - 179 71083210 cycM SAR11_0504 - cytochrome C 502 27.26 0 491948..492688 + 246 71083211 kdsB SAR11_0505 - 3-deoxy-manno-octulosonate cytidylyltransferase 503 30.32 0 492690..493520 + 276 71083212 pheA SAR11_0506 - prephenate dehydratase 504 26.94 0 493665..495338 + 557 71083213 dnaX SAR11_0507 - DNA-directed DNA polymerase gamma/tau subunit 505 29.56 0 495342..495659 + 105 71083214 ybaB SAR11_0508 - hypothetical protein 506 30.07 0 495664..496275 + 203 71083215 recR SAR11_0509 - recR-like protein 507 31.83 0 496262..498457 - 731 71083216 glcB SAR11_0510 - malate synthase G 508 31.26 0 498707..499813 + 368 71083217 accA SAR11_0511 - acetyl-CoA carboxylase 509 28.81 0 499808..502372 - 854 71083218 secA SAR11_0512 - preprotein translocase secA 510 27.58 0 502576..503739 + 387 71083219 argJ SAR11_0513 - ArgJ family protein 511 26.85 0 503781..504212 + 143 71083220 - SAR11_0514 - hypothetical protein 512 25.03 -1 504209..504931 - 240 71083221 ubiG SAR11_0515 - 3-demethylubiquinone-9 3-methyltransferase 513 30.45 0 504997..506208 + 403 71083222 lysC SAR11_0516 - aspartate kinase 514 31.52 0 506212..507312 + 366 71083223 ispG SAR11_0517 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 515 32.40 0 507318..508391 + 357 71083224 prfA SAR11_0518 - protein release factor class I 516 25.86 0 508393..509235 + 280 71083225 hemK SAR11_0519 - hypothetical protein 517 29.77 0 509250..509726 + 158 71083226 - SAR11_0520 - hypothetical protein 518 25.87 0 509729..511027 - 432 71083227 yebA SAR11_0521 - M23/M37 peptidase 519 23.03 -1 516442..516975 + 177 71083228 - SAR11_0523 - glucose-6-phosphate isomerase-like protein 520 22.37 -1 516956..517402 + 148 71083229 - SAR11_0524 - hypothetical protein 521 22.34 -1 517419..518273 + 284 71083230 - SAR11_0525 - NAD-dependent epimerase/dehydratase family protein 522 23.61 -1 518270..519133 - 287 71083231 - SAR11_0526 - NAD-dependent epimerase/dehydratase family protein 523 27.86 0 519133..520869 - 578 71083232 - SAR11_0527 - acetolactate synthase II large chain 524 28.03 0 520922..521581 + 219 71083233 smtA SAR11_0528 - protein-L-isoaspartate(D-aspartate) O-methyltransferase 525 25.36 0 521587..522627 + 346 71083234 - SAR11_0529 - zinc-containing alcohol dehydrogenase 526 22.25 -1 522650..523831 + 393 71083235 - SAR11_0530 - cyclopropane-fatty-acyl-phospholipid synthase 527 30.64 0 523831..524610 + 259 71083236 - SAR11_0531 - FabG-like protein 528 20.51 -2 524613..525977 - 454 71083237 - SAR11_0532 - FAD oxidase family protein 529 20.28 -2 526036..526809 - 257 71083238 - SAR11_0533 - methyltransferase 530 23.19 -1 526790..528139 + 449 71083239 - SAR11_0534 - aminotransferase 531 17.59 -2 528210..529664 - 484 71083240 - SAR11_0535 - deoxynucleotidase 532 25.38 0 529658..530587 - 309 71083241 tktC SAR11_0536 - transketolase family protein 533 28.54 0 530587..531378 - 263 71083242 tktN SAR11_0537 - transketolase 534 25.03 -1 531418..532356 + 312 71083243 - SAR11_0538 - UDP-glucose 4 epimerase 535 24.85 -1 532349..533857 + 502 71083244 rfaE SAR11_0539 - cytidylyltransferase/carbohydrate (or pyrimidine) kinase 536 21.16 -1 533858..534580 + 240 71083245 spsA SAR11_0540 - spsA-like glycosyl transferase 537 24.04 -1 534588..535577 + 329 71083246 rfbB SAR11_0541 - dtdpglucose 4,6-dehydratase 538 17.70 -2 535581..537269 - 562 71083247 - SAR11_0542 - unknown membrane protein 539 14.25 -2 537246..537701 + 151 71083248 - SAR11_0543 - unknown membrane protein 540 15.15 -2 537702..538163 + 153 71083249 - SAR11_0544 - unknown membrane protein 541 23.99 -1 538166..538732 + 188 71083250 gmhA SAR11_0545 - phosphoheptose isomerase 542 22.76 -1 538725..539216 - 163 71083251 gmhB SAR11_0546 - D-glycero-D-manno-heptose 1,7 bisphophate phosphatase 543 20.91 -2 539250..540239 - 329 71083252 - SAR11_0547 - D amino acid oxidase (DAO) family protein 544 23.56 -1 540307..541656 - 449 71083253 - SAR11_0548 - unknown membrane protein 545 20.30 -2 541643..542854 - 403 71083254 - SAR11_0549 - unknown membrane protein 546 23.72 -1 543013..544125 - 370 71083255 rfaG SAR11_0550 - glycosyl transferase family protein 547 19.18 -2 544167..545240 - 357 71083256 - SAR11_0551 - glycosyl transferase family protein 548 23.50 -1 545259..546092 + 277 71083257 lgtF SAR11_0552 - spsA-like protein 549 27.84 0 546079..547206 + 375 71083258 - SAR11_0553 - DegT/DnrJ/EryC1/StrS aminotransferase 550 25.84 0 547210..548943 + 577 71083259 - SAR11_0554 - carbamoyltransferase 551 19.61 -2 548924..549535 + 203 71083260 - SAR11_0555 - CMAS family protein 552 21.25 -1 549536..550669 - 377 71083261 - SAR11_0556 - glycosyl transferase 553 20.35 -2 550866..551843 + 325 71083262 - SAR11_0557 - glycosyl transferase family protein 554 23.22 -1 551827..552528 + 233 71083263 - SAR11_0558 - cyclopropane-fatty-acyl-phospholipid 555 22.22 -1 552525..553595 - 356 71083264 rfaK SAR11_0559 - 1,2-N-acetylglucosaminetransferase 556 24.68 -1 553607..554311 + 234 71083265 - SAR11_0560 - PCMT - protein-L-isoaspartate(D-aspartate) O-methyltransferase 557 17.14 -2 554312..555052 + 246 71083266 - SAR11_0561 - oxidoreductase family protein 558 21.22 -1 555224..555991 - 255 71083267 wbyL SAR11_0563 - glycosyl transferase 559 23.81 -1 555992..556138 - 48 71083268 - SAR11_1726 - hypothetical protein 560 28.57 0 556146..556334 - 62 71083269 - SAR11_0564 - putative reductase 561 26.78 0 556386..556751 + 121 71083270 - SAR11_0565 - hypothetical protein 562 21.84 -1 556732..558045 + 437 71083271 - SAR11_0566 - O-antigen polymerase 563 19.66 -2 558028..559029 - 333 71083272 - SAR11_0567 - hypothetical protein 564 23.05 -1 559270..560484 + 404 71083273 - SAR11_0568 - D-amino acid oxidoreductase family protein 565 22.99 -1 560488..561444 + 318 71083274 galE SAR11_0569 - UDP-glucose 4-epimerase 566 29.79 0 561627..562670 + 347 71083275 gmd SAR11_0570 - gdpmannose 4,6-dehydratase 567 25.03 -1 562663..563601 + 312 71083276 wcaG SAR11_0571 - GDP-fucose synthetase chain A 568 24.80 -1 563601..564479 + 292 71083277 rfaD SAR11_0572 - ADP-L-glycero-D-mannoheptose-6-epimerase 569 25.40 0 564660..564785 + 41 71083278 rpmJ SAR11_0573 - ribosomal protein L36 570 28.93 0 564911..565999 + 362 71083279 pntA SAR11_0574 - alanine dehydrogenase/PNT 29.30 MEAN 4.13 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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