IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
430	 34.31	+1	423061..424500	+	479	71083139	gltD	SAR11_0433	-	putative oxidoreductase
431	 32.25	0	424500..429005	+	1501	71083140	gltB	SAR11_0434	-	glutamate synthase large subunit
432	 25.57	0	429007..429882	+	291	71083141	-	SAR11_0435	-	nucleoside-diphosphate-sugar epimerase
433	 25.99	0	429853..430506	-	217	71083142	-	SAR11_0436	-	alpha/beta hydrolase fold protein
434	 28.48	0	430651..431805	+	384	71083143	capM	SAR11_0437	-	glycosyl transferase
435	 31.40	0	431806..433722	+	638	71083144	thrS	SAR11_0438	-	threonyl-tRNA synthetase
436	 29.49	0	433723..434268	+	181	71083145	infC	SAR11_0439	-	translation initiation factor IF-3
437	 31.40	0	434322..434528	+	68	71083146	rpmI	SAR11_0440	-	50S ribosomal protein L35
438	 32.21	0	434530..434886	+	118	71083147	rplT	SAR11_0441	-	50S ribosomal protein L20
439	 29.40	0	434930..435997	+	355	71083148	pheS	SAR11_0442	-	phenylalanyl-tRNA synthetase subunit alpha
440	 29.51	0	435994..438402	+	802	71083149	pheT	SAR11_0443	-	phenylalanine-tRNA ligase
441	 32.17	0	438405..440213	+	602	71083150	lepA	SAR11_0444	-	GTP-binding protein LepA
442	 20.36	-2	440311..441081	-	256	71083151	-	SAR11_0445	-	methyltransferase FkbM
443	 29.93	0	441234..443291	+	685	71083152	gyrB	SAR11_0446	-	DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B)
444	 26.39	0	443294..444574	+	426	71083153	regB	SAR11_0447	-	sensor histidine kinase
445	 28.36	0	444571..446379	-	602	71083154	cobT	SAR11_0448	-	cobalamin biosynthesis protein CobT
446	 32.21	0	446380..447354	-	324	71083155	cobS	SAR11_0449	-	cobalamin biosynthesis protein CobS
447	 28.79	0	447344..447871	-	175	71083156	-	SAR11_0450	-	molecular chaperone
448	 19.44	-2	447870..448157	+	95	71083157	-	SAR11_0451	-	BolA-like protein
449	 25.11	-1	448146..449252	-	368	71083158	aroB	SAR11_0452	-	3-dehydroquinate synthase
450	 25.54	0	449239..449751	-	170	71083159	aroK	SAR11_0453	-	shikimate kinase
451	 25.42	0	449810..449986	+	58	71083160	-	SAR11_0454	-	hypothetical protein
452	 25.79	0	450066..451721	+	551	71083161	-	SAR11_0455	-	hypothetical protein
453	 28.90	0	451748..452266	+	172	71083162	def	SAR11_0456	-	peptide deformylase
454	 28.40	0	452267..453199	+	310	71083163	fmt	SAR11_0457	-	methionyl-tRNA formyltransferase
455	 26.18	0	453192..453932	+	246	71083164	truA	SAR11_0458	-	tRNA pseudouridine synthase A
456	 28.75	0	453922..454401	-	159	71083165	set1	SAR11_0459	-	nuclear protein SET
457	 30.32	0	454433..455362	-	309	71083166	acuC	SAR11_0460	-	histone deacetylase family protein
458	 27.18	0	455363..455557	-	64	71083167	-	SAR11_0461	-	hypothetical protein
459	 27.97	0	455557..456711	-	384	71083168	dapE	SAR11_0462	-	succinyl-diaminopimelate desuccinylase
460	 33.82	+1	456712..457539	-	275	71083169	dapD	SAR11_0463	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
461	 26.49	0	457569..458240	-	223	71083170	-	SAR11_0464	-	HAD-superfamily hydrolase
462	 29.30	0	458237..459103	-	288	71083171	argB	SAR11_0465	-	acetylglutamate kinase
463	 30.77	0	459104..460780	-	558	71083172	yidC	SAR11_0466	-	putative inner membrane protein translocase component YidC
464	 30.56	0	460780..461031	-	83	71083173	-	SAR11_0467	-	hypothetical protein
465	 23.19	-1	461031..461375	-	114	71083174	-	SAR11_0468	-	ribonuclease P protein
466	 25.69	0	461643..462362	+	239	71083175	-	SAR11_0469	-	DedA family protein
467	 33.33	0	462540..462737	+	65	71083176	-	SAR11_0470	-	hypothetical protein
468	 17.65	-2	462737..462838	+	33	71083177	-	SAR11_0471	-	hypothetical protein
469	 32.97	0	462838..463395	+	185	71083178	dcd	SAR11_0472	-	deoxycytidine triphosphate deaminase
470	 30.30	0	463398..464651	+	417	71083179	murA	SAR11_0473	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
471	 24.75	-1	464651..465046	+	131	71083180	-	SAR11_0474	-	hypothetical protein
472	 29.68	0	465046..466332	+	428	71083181	hisD	SAR11_0475	-	histidinol dehydrogenase
473	 36.57	+1	466335..466550	+	71	71083182	infA	SAR11_0476	-	translation initiation factor IF-1
474	 36.15	+1	466720..466932	+	70	71083183	cspE	SAR11_0477	-	cold shock protein
475	 29.26	0	467248..468645	+	465	71083184	hisS	SAR11_0478	-	histidyl-tRNA synthetase
476	 27.26	0	468623..469675	+	350	71083185	hisZ	SAR11_0479	-	ATP phosphoribosyltransferase regulatory subunit
477	 28.55	0	469675..470364	+	229	71083186	hisG	SAR11_0480	-	ATP phosphoribosyltransferase catalytic subunit
478	 32.06	0	470546..471643	+	365	71083187	rmuC	SAR11_0481	-	DNA recombination protein
479	 32.71	0	471726..472370	+	214	71083188	-	SAR11_0482	-	hypothetical protein
480	 31.65	0	472372..473799	+	475	71083189	sbcB	SAR11_0483	-	exodeoxyribonuclease I
481	 33.96	+1	473875..474192	+	105	71083190	trxA	SAR11_0484	-	thioredoxin 1
482	 27.74	0	474189..475457	-	422	71083191	folC	SAR11_0485	-	FolC bifunctional protein (folylpolyglutamate synthase/dihydrofolate synthase)
483	 33.55	+1	475411..476340	-	309	71083192	accD	SAR11_0486	-	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
484	 28.70	0	476337..477134	-	265	71083193	trpA	SAR11_0487	-	tryptophan synthase subunit alpha
485	 33.74	+1	477136..478368	-	410	71083194	trpB	SAR11_0488	-	tryptophan synthase subunit beta
486	 25.40	0	478358..478987	-	209	71083195	trpF	SAR11_0489	-	N-(5'-phosphoribosyl)anthranilate isomerase
487	 27.85	0	478984..479676	-	230	71083196	pyrF	SAR11_0490	-	orotidine 5'-phosphate decarboxylase
488	 28.87	0	479666..479956	-	96	71083197	himD	SAR11_0491	-	integration host factor beta-subunit (IHF-beta)
489	 30.62	0	479960..481690	-	576	71083198	rpsA	SAR11_0492	-	30S ribosomal protein S1
490	 26.45	0	481690..482343	-	217	71083199	cmk	SAR11_0493	-	cytidylate kinase
491	 26.85	0	482340..483527	-	395	71083200	aroA	SAR11_0494	-	3-phosphoshikimate 1-carboxyvinyltransferase
492	 30.37	0	483672..484448	-	258	71083201	yhbG	SAR11_0495	-	sulfate/thiosulfate import ATP-binding protein cysA
493	 25.64	0	484450..485034	-	194	71083202	-	SAR11_0496	-	hypothetical protein
494	 28.19	0	485035..486006	-	323	71083203	gutQ	SAR11_0497	-	arabinose 5-phosphate isomerase
495	 29.74	0	486007..486618	-	203	71083204	rnd	SAR11_0498	-	ribonuclease D
496	 28.59	0	486635..487603	+	322	71083205	-	SAR11_0499	-	NADH-ubiquinone oxireductase
497	 31.94	0	487775..488275	-	166	71083206	-	SAR11_0500	-	hypothetical protein
498	 29.48	0	488408..489211	+	267	71083207	-	SAR11_0501	-	YadH-like ABC-2-type transport protein
499	 28.79	0	489215..490381	+	388	71083208	argD	SAR11_0502	-	acetylornithine aminotransferase
500	 28.39	0	490384..491313	+	309	71083209	argF	SAR11_0503	-	ornithine carbamoyltransferase
501	 36.11	+1	491305..491844	-	179	71083210	cycM	SAR11_0504	-	cytochrome C
502	 27.26	0	491948..492688	+	246	71083211	kdsB	SAR11_0505	-	3-deoxy-manno-octulosonate cytidylyltransferase
503	 30.32	0	492690..493520	+	276	71083212	pheA	SAR11_0506	-	prephenate dehydratase
504	 26.94	0	493665..495338	+	557	71083213	dnaX	SAR11_0507	-	DNA-directed DNA polymerase gamma/tau subunit
505	 29.56	0	495342..495659	+	105	71083214	ybaB	SAR11_0508	-	hypothetical protein
506	 30.07	0	495664..496275	+	203	71083215	recR	SAR11_0509	-	recR-like protein
507	 31.83	0	496262..498457	-	731	71083216	glcB	SAR11_0510	-	malate synthase G
508	 31.26	0	498707..499813	+	368	71083217	accA	SAR11_0511	-	acetyl-CoA carboxylase
509	 28.81	0	499808..502372	-	854	71083218	secA	SAR11_0512	-	preprotein translocase secA
510	 27.58	0	502576..503739	+	387	71083219	argJ	SAR11_0513	-	ArgJ family protein
511	 26.85	0	503781..504212	+	143	71083220	-	SAR11_0514	-	hypothetical protein
512	 25.03	-1	504209..504931	-	240	71083221	ubiG	SAR11_0515	-	3-demethylubiquinone-9 3-methyltransferase
513	 30.45	0	504997..506208	+	403	71083222	lysC	SAR11_0516	-	aspartate kinase
514	 31.52	0	506212..507312	+	366	71083223	ispG	SAR11_0517	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
515	 32.40	0	507318..508391	+	357	71083224	prfA	SAR11_0518	-	protein release factor class I
516	 25.86	0	508393..509235	+	280	71083225	hemK	SAR11_0519	-	hypothetical protein
517	 29.77	0	509250..509726	+	158	71083226	-	SAR11_0520	-	hypothetical protein
518	 25.87	0	509729..511027	-	432	71083227	yebA	SAR11_0521	-	M23/M37 peptidase
519	 23.03	-1	516442..516975	+	177	71083228	-	SAR11_0523	-	glucose-6-phosphate isomerase-like protein
520	 22.37	-1	516956..517402	+	148	71083229	-	SAR11_0524	-	hypothetical protein
521	 22.34	-1	517419..518273	+	284	71083230	-	SAR11_0525	-	NAD-dependent epimerase/dehydratase family protein
522	 23.61	-1	518270..519133	-	287	71083231	-	SAR11_0526	-	NAD-dependent epimerase/dehydratase family protein
523	 27.86	0	519133..520869	-	578	71083232	-	SAR11_0527	-	acetolactate synthase II large chain
524	 28.03	0	520922..521581	+	219	71083233	smtA	SAR11_0528	-	protein-L-isoaspartate(D-aspartate) O-methyltransferase
525	 25.36	0	521587..522627	+	346	71083234	-	SAR11_0529	-	zinc-containing alcohol dehydrogenase
526	 22.25	-1	522650..523831	+	393	71083235	-	SAR11_0530	-	cyclopropane-fatty-acyl-phospholipid synthase
527	 30.64	0	523831..524610	+	259	71083236	-	SAR11_0531	-	FabG-like protein
528	 20.51	-2	524613..525977	-	454	71083237	-	SAR11_0532	-	FAD oxidase family protein
529	 20.28	-2	526036..526809	-	257	71083238	-	SAR11_0533	-	methyltransferase
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.