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Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759 1354 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 429 26.46 0 422106..422876 - 256 71083138 bacA SAR11_0432 - bacitracin resistance protein (putative undecaprenol kinase) 430 34.31 +1 423061..424500 + 479 71083139 gltD SAR11_0433 - putative oxidoreductase 431 32.25 0 424500..429005 + 1501 71083140 gltB SAR11_0434 - glutamate synthase large subunit 432 25.57 0 429007..429882 + 291 71083141 - SAR11_0435 - nucleoside-diphosphate-sugar epimerase 433 25.99 0 429853..430506 - 217 71083142 - SAR11_0436 - alpha/beta hydrolase fold protein 434 28.48 0 430651..431805 + 384 71083143 capM SAR11_0437 - glycosyl transferase 435 31.40 0 431806..433722 + 638 71083144 thrS SAR11_0438 - threonyl-tRNA synthetase 436 29.49 0 433723..434268 + 181 71083145 infC SAR11_0439 - translation initiation factor IF-3 437 31.40 0 434322..434528 + 68 71083146 rpmI SAR11_0440 - 50S ribosomal protein L35 438 32.21 0 434530..434886 + 118 71083147 rplT SAR11_0441 - 50S ribosomal protein L20 439 29.40 0 434930..435997 + 355 71083148 pheS SAR11_0442 - phenylalanyl-tRNA synthetase subunit alpha 440 29.51 0 435994..438402 + 802 71083149 pheT SAR11_0443 - phenylalanine-tRNA ligase 441 32.17 0 438405..440213 + 602 71083150 lepA SAR11_0444 - GTP-binding protein LepA 442 20.36 -2 440311..441081 - 256 71083151 - SAR11_0445 - methyltransferase FkbM 443 29.93 0 441234..443291 + 685 71083152 gyrB SAR11_0446 - DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B) 444 26.39 0 443294..444574 + 426 71083153 regB SAR11_0447 - sensor histidine kinase 445 28.36 0 444571..446379 - 602 71083154 cobT SAR11_0448 - cobalamin biosynthesis protein CobT 446 32.21 0 446380..447354 - 324 71083155 cobS SAR11_0449 - cobalamin biosynthesis protein CobS 447 28.79 0 447344..447871 - 175 71083156 - SAR11_0450 - molecular chaperone 448 19.44 -2 447870..448157 + 95 71083157 - SAR11_0451 - BolA-like protein 449 25.11 -1 448146..449252 - 368 71083158 aroB SAR11_0452 - 3-dehydroquinate synthase 450 25.54 0 449239..449751 - 170 71083159 aroK SAR11_0453 - shikimate kinase 451 25.42 0 449810..449986 + 58 71083160 - SAR11_0454 - hypothetical protein 452 25.79 0 450066..451721 + 551 71083161 - SAR11_0455 - hypothetical protein 453 28.90 0 451748..452266 + 172 71083162 def SAR11_0456 - peptide deformylase 454 28.40 0 452267..453199 + 310 71083163 fmt SAR11_0457 - methionyl-tRNA formyltransferase 455 26.18 0 453192..453932 + 246 71083164 truA SAR11_0458 - tRNA pseudouridine synthase A 456 28.75 0 453922..454401 - 159 71083165 set1 SAR11_0459 - nuclear protein SET 457 30.32 0 454433..455362 - 309 71083166 acuC SAR11_0460 - histone deacetylase family protein 458 27.18 0 455363..455557 - 64 71083167 - SAR11_0461 - hypothetical protein 459 27.97 0 455557..456711 - 384 71083168 dapE SAR11_0462 - succinyl-diaminopimelate desuccinylase 460 33.82 +1 456712..457539 - 275 71083169 dapD SAR11_0463 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 461 26.49 0 457569..458240 - 223 71083170 - SAR11_0464 - HAD-superfamily hydrolase 462 29.30 0 458237..459103 - 288 71083171 argB SAR11_0465 - acetylglutamate kinase 463 30.77 0 459104..460780 - 558 71083172 yidC SAR11_0466 - putative inner membrane protein translocase component YidC 464 30.56 0 460780..461031 - 83 71083173 - SAR11_0467 - hypothetical protein 465 23.19 -1 461031..461375 - 114 71083174 - SAR11_0468 - ribonuclease P protein 466 25.69 0 461643..462362 + 239 71083175 - SAR11_0469 - DedA family protein 467 33.33 0 462540..462737 + 65 71083176 - SAR11_0470 - hypothetical protein 468 17.65 -2 462737..462838 + 33 71083177 - SAR11_0471 - hypothetical protein 469 32.97 0 462838..463395 + 185 71083178 dcd SAR11_0472 - deoxycytidine triphosphate deaminase 470 30.30 0 463398..464651 + 417 71083179 murA SAR11_0473 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 471 24.75 -1 464651..465046 + 131 71083180 - SAR11_0474 - hypothetical protein 472 29.68 0 465046..466332 + 428 71083181 hisD SAR11_0475 - histidinol dehydrogenase 473 36.57 +1 466335..466550 + 71 71083182 infA SAR11_0476 - translation initiation factor IF-1 474 36.15 +1 466720..466932 + 70 71083183 cspE SAR11_0477 - cold shock protein 475 29.26 0 467248..468645 + 465 71083184 hisS SAR11_0478 - histidyl-tRNA synthetase 476 27.26 0 468623..469675 + 350 71083185 hisZ SAR11_0479 - ATP phosphoribosyltransferase regulatory subunit 477 28.55 0 469675..470364 + 229 71083186 hisG SAR11_0480 - ATP phosphoribosyltransferase catalytic subunit 478 32.06 0 470546..471643 + 365 71083187 rmuC SAR11_0481 - DNA recombination protein 479 32.71 0 471726..472370 + 214 71083188 - SAR11_0482 - hypothetical protein 480 31.65 0 472372..473799 + 475 71083189 sbcB SAR11_0483 - exodeoxyribonuclease I 481 33.96 +1 473875..474192 + 105 71083190 trxA SAR11_0484 - thioredoxin 1 482 27.74 0 474189..475457 - 422 71083191 folC SAR11_0485 - FolC bifunctional protein (folylpolyglutamate synthase/dihydrofolate synthase) 483 33.55 +1 475411..476340 - 309 71083192 accD SAR11_0486 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta 484 28.70 0 476337..477134 - 265 71083193 trpA SAR11_0487 - tryptophan synthase subunit alpha 485 33.74 +1 477136..478368 - 410 71083194 trpB SAR11_0488 - tryptophan synthase subunit beta 486 25.40 0 478358..478987 - 209 71083195 trpF SAR11_0489 - N-(5'-phosphoribosyl)anthranilate isomerase 487 27.85 0 478984..479676 - 230 71083196 pyrF SAR11_0490 - orotidine 5'-phosphate decarboxylase 488 28.87 0 479666..479956 - 96 71083197 himD SAR11_0491 - integration host factor beta-subunit (IHF-beta) 489 30.62 0 479960..481690 - 576 71083198 rpsA SAR11_0492 - 30S ribosomal protein S1 490 26.45 0 481690..482343 - 217 71083199 cmk SAR11_0493 - cytidylate kinase 491 26.85 0 482340..483527 - 395 71083200 aroA SAR11_0494 - 3-phosphoshikimate 1-carboxyvinyltransferase 492 30.37 0 483672..484448 - 258 71083201 yhbG SAR11_0495 - sulfate/thiosulfate import ATP-binding protein cysA 493 25.64 0 484450..485034 - 194 71083202 - SAR11_0496 - hypothetical protein 494 28.19 0 485035..486006 - 323 71083203 gutQ SAR11_0497 - arabinose 5-phosphate isomerase 495 29.74 0 486007..486618 - 203 71083204 rnd SAR11_0498 - ribonuclease D 496 28.59 0 486635..487603 + 322 71083205 - SAR11_0499 - NADH-ubiquinone oxireductase 497 31.94 0 487775..488275 - 166 71083206 - SAR11_0500 - hypothetical protein 498 29.48 0 488408..489211 + 267 71083207 - SAR11_0501 - YadH-like ABC-2-type transport protein 499 28.79 0 489215..490381 + 388 71083208 argD SAR11_0502 - acetylornithine aminotransferase 500 28.39 0 490384..491313 + 309 71083209 argF SAR11_0503 - ornithine carbamoyltransferase 501 36.11 +1 491305..491844 - 179 71083210 cycM SAR11_0504 - cytochrome C 502 27.26 0 491948..492688 + 246 71083211 kdsB SAR11_0505 - 3-deoxy-manno-octulosonate cytidylyltransferase 503 30.32 0 492690..493520 + 276 71083212 pheA SAR11_0506 - prephenate dehydratase 504 26.94 0 493665..495338 + 557 71083213 dnaX SAR11_0507 - DNA-directed DNA polymerase gamma/tau subunit 505 29.56 0 495342..495659 + 105 71083214 ybaB SAR11_0508 - hypothetical protein 506 30.07 0 495664..496275 + 203 71083215 recR SAR11_0509 - recR-like protein 507 31.83 0 496262..498457 - 731 71083216 glcB SAR11_0510 - malate synthase G 508 31.26 0 498707..499813 + 368 71083217 accA SAR11_0511 - acetyl-CoA carboxylase 509 28.81 0 499808..502372 - 854 71083218 secA SAR11_0512 - preprotein translocase secA 510 27.58 0 502576..503739 + 387 71083219 argJ SAR11_0513 - ArgJ family protein 511 26.85 0 503781..504212 + 143 71083220 - SAR11_0514 - hypothetical protein 512 25.03 -1 504209..504931 - 240 71083221 ubiG SAR11_0515 - 3-demethylubiquinone-9 3-methyltransferase 513 30.45 0 504997..506208 + 403 71083222 lysC SAR11_0516 - aspartate kinase 514 31.52 0 506212..507312 + 366 71083223 ispG SAR11_0517 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 515 32.40 0 507318..508391 + 357 71083224 prfA SAR11_0518 - protein release factor class I 516 25.86 0 508393..509235 + 280 71083225 hemK SAR11_0519 - hypothetical protein 517 29.77 0 509250..509726 + 158 71083226 - SAR11_0520 - hypothetical protein 518 25.87 0 509729..511027 - 432 71083227 yebA SAR11_0521 - M23/M37 peptidase 519 23.03 -1 516442..516975 + 177 71083228 - SAR11_0523 - glucose-6-phosphate isomerase-like protein 520 22.37 -1 516956..517402 + 148 71083229 - SAR11_0524 - hypothetical protein 521 22.34 -1 517419..518273 + 284 71083230 - SAR11_0525 - NAD-dependent epimerase/dehydratase family protein 522 23.61 -1 518270..519133 - 287 71083231 - SAR11_0526 - NAD-dependent epimerase/dehydratase family protein 523 27.86 0 519133..520869 - 578 71083232 - SAR11_0527 - acetolactate synthase II large chain 524 28.03 0 520922..521581 + 219 71083233 smtA SAR11_0528 - protein-L-isoaspartate(D-aspartate) O-methyltransferase 525 25.36 0 521587..522627 + 346 71083234 - SAR11_0529 - zinc-containing alcohol dehydrogenase 526 22.25 -1 522650..523831 + 393 71083235 - SAR11_0530 - cyclopropane-fatty-acyl-phospholipid synthase 527 30.64 0 523831..524610 + 259 71083236 - SAR11_0531 - FabG-like protein 528 20.51 -2 524613..525977 - 454 71083237 - SAR11_0532 - FAD oxidase family protein 29.30 MEAN 4.13 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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