version 1.0
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759 1354 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 400 34.75 +1 393293..393646 - 117 71083109 dut SAR11_0404 - deoxyuridine 5'-triphosphate nucleotidohydrolase 401 28.44 0 393737..394942 - 401 71083110 dfp SAR11_0405 - phosphopantothenoylcysteine decarboxylase 402 30.85 0 394951..396318 - 455 71083111 aarF SAR11_0406 - ubiquinone biosynthesis protein 403 28.09 0 396519..397223 - 234 71083112 ubiE SAR11_0407 - ubiquinone/menaquinone biosynthesis methyltransferase 404 23.26 -1 397259..398122 + 287 71083113 mutM SAR11_0408 - formamidopyrimidine-DNA glycosylase 405 30.27 0 398173..398433 + 86 71083114 rpsT SAR11_0409 - ribosomal protein S20 406 26.59 0 398915..400249 + 444 71083115 dnaA SAR11_0410 - chromosomal replication initiator protein 407 25.48 0 400461..401351 + 296 71083116 dnaN SAR11_0411 - DNA polymerase III 408 26.21 0 401348..402049 - 233 71083117 plsC SAR11_0412 - 1-acyl-sn-glycerol-3-phosphate acyltransferase 409 25.76 0 402062..403276 - 404 71083118 lysA SAR11_0413 - diaminopimelate decarboxylase 410 26.50 0 403276..403392 - 38 71083119 - SAR11_0414 - hypothetical protein 411 26.71 0 403394..404782 - 462 71083120 argH SAR11_0415 - argininosuccinate lyase 412 25.39 0 404807..405322 + 171 71083121 tlpA SAR11_0416 - thiol:disulfide interchange protein 413 33.33 0 405365..405535 + 56 71083122 - SAR11_1725 - hypothetical protein 414 27.94 0 405618..406229 + 203 71083123 - SAR11_0417 - putative serine esterase 415 31.75 0 406281..406847 + 188 71083124 mcrA SAR11_0418 - 5-methylcytosine-specific restriction enzyme A 416 28.28 0 406848..407381 - 177 71083125 coq7 SAR11_0419 - Coq7 family protein 417 23.95 -1 407365..407865 - 166 71083126 dsbB SAR11_0420 - disulfide bond formation protein 418 27.47 0 407852..408448 - 198 71083127 dedA SAR11_0421 - DedA family protein 419 27.01 0 408798..410315 + 505 71083128 faa1 SAR11_0422 - putative long-chain-fatty-acid--CoA ligase (long-chain acyl-CoA synthetase) 420 29.44 0 410672..411571 - 299 71083129 carD SAR11_0423 - hypothetical protein 421 33.64 +1 411528..411854 - 108 71083130 fdxA SAR11_0424 - ferredoxin 422 28.64 0 411851..412276 - 141 71083131 - SAR11_0425 - hypothetical protein 423 27.85 0 412276..414756 - 826 71083132 suv3 SAR11_0426 - ATP-dependent helicase 424 27.39 0 414886..415407 - 173 71083133 - SAR11_0427 - thioesterase superfamily protein 425 32.91 0 415586..416773 + 395 71083134 thlA SAR11_0428 - Acetyl-CoA acetyltransferase 426 33.89 +1 416904..419942 + 1012 71083135 aceE SAR11_0429 - pyruvate dehydrogenase (lipoamide) e1 component 427 29.72 0 419944..421215 + 423 71083136 aceF SAR11_0430 - dihydrolipoamide S-acetyltransferase 428 29.05 0 421222..422109 + 295 71083137 ydeD SAR11_0431 - transporter 429 26.46 0 422106..422876 - 256 71083138 bacA SAR11_0432 - bacitracin resistance protein (putative undecaprenol kinase) 430 34.31 +1 423061..424500 + 479 71083139 gltD SAR11_0433 - putative oxidoreductase 431 32.25 0 424500..429005 + 1501 71083140 gltB SAR11_0434 - glutamate synthase large subunit 432 25.57 0 429007..429882 + 291 71083141 - SAR11_0435 - nucleoside-diphosphate-sugar epimerase 433 25.99 0 429853..430506 - 217 71083142 - SAR11_0436 - alpha/beta hydrolase fold protein 434 28.48 0 430651..431805 + 384 71083143 capM SAR11_0437 - glycosyl transferase 435 31.40 0 431806..433722 + 638 71083144 thrS SAR11_0438 - threonyl-tRNA synthetase 436 29.49 0 433723..434268 + 181 71083145 infC SAR11_0439 - translation initiation factor IF-3 437 31.40 0 434322..434528 + 68 71083146 rpmI SAR11_0440 - 50S ribosomal protein L35 438 32.21 0 434530..434886 + 118 71083147 rplT SAR11_0441 - 50S ribosomal protein L20 439 29.40 0 434930..435997 + 355 71083148 pheS SAR11_0442 - phenylalanyl-tRNA synthetase subunit alpha 440 29.51 0 435994..438402 + 802 71083149 pheT SAR11_0443 - phenylalanine-tRNA ligase 441 32.17 0 438405..440213 + 602 71083150 lepA SAR11_0444 - GTP-binding protein LepA 442 20.36 -2 440311..441081 - 256 71083151 - SAR11_0445 - methyltransferase FkbM 443 29.93 0 441234..443291 + 685 71083152 gyrB SAR11_0446 - DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B) 444 26.39 0 443294..444574 + 426 71083153 regB SAR11_0447 - sensor histidine kinase 445 28.36 0 444571..446379 - 602 71083154 cobT SAR11_0448 - cobalamin biosynthesis protein CobT 446 32.21 0 446380..447354 - 324 71083155 cobS SAR11_0449 - cobalamin biosynthesis protein CobS 447 28.79 0 447344..447871 - 175 71083156 - SAR11_0450 - molecular chaperone 448 19.44 -2 447870..448157 + 95 71083157 - SAR11_0451 - BolA-like protein 449 25.11 -1 448146..449252 - 368 71083158 aroB SAR11_0452 - 3-dehydroquinate synthase 450 25.54 0 449239..449751 - 170 71083159 aroK SAR11_0453 - shikimate kinase 451 25.42 0 449810..449986 + 58 71083160 - SAR11_0454 - hypothetical protein 452 25.79 0 450066..451721 + 551 71083161 - SAR11_0455 - hypothetical protein 453 28.90 0 451748..452266 + 172 71083162 def SAR11_0456 - peptide deformylase 454 28.40 0 452267..453199 + 310 71083163 fmt SAR11_0457 - methionyl-tRNA formyltransferase 455 26.18 0 453192..453932 + 246 71083164 truA SAR11_0458 - tRNA pseudouridine synthase A 456 28.75 0 453922..454401 - 159 71083165 set1 SAR11_0459 - nuclear protein SET 457 30.32 0 454433..455362 - 309 71083166 acuC SAR11_0460 - histone deacetylase family protein 458 27.18 0 455363..455557 - 64 71083167 - SAR11_0461 - hypothetical protein 459 27.97 0 455557..456711 - 384 71083168 dapE SAR11_0462 - succinyl-diaminopimelate desuccinylase 460 33.82 +1 456712..457539 - 275 71083169 dapD SAR11_0463 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 461 26.49 0 457569..458240 - 223 71083170 - SAR11_0464 - HAD-superfamily hydrolase 462 29.30 0 458237..459103 - 288 71083171 argB SAR11_0465 - acetylglutamate kinase 463 30.77 0 459104..460780 - 558 71083172 yidC SAR11_0466 - putative inner membrane protein translocase component YidC 464 30.56 0 460780..461031 - 83 71083173 - SAR11_0467 - hypothetical protein 465 23.19 -1 461031..461375 - 114 71083174 - SAR11_0468 - ribonuclease P protein 466 25.69 0 461643..462362 + 239 71083175 - SAR11_0469 - DedA family protein 467 33.33 0 462540..462737 + 65 71083176 - SAR11_0470 - hypothetical protein 468 17.65 -2 462737..462838 + 33 71083177 - SAR11_0471 - hypothetical protein 469 32.97 0 462838..463395 + 185 71083178 dcd SAR11_0472 - deoxycytidine triphosphate deaminase 470 30.30 0 463398..464651 + 417 71083179 murA SAR11_0473 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 471 24.75 -1 464651..465046 + 131 71083180 - SAR11_0474 - hypothetical protein 472 29.68 0 465046..466332 + 428 71083181 hisD SAR11_0475 - histidinol dehydrogenase 473 36.57 +1 466335..466550 + 71 71083182 infA SAR11_0476 - translation initiation factor IF-1 474 36.15 +1 466720..466932 + 70 71083183 cspE SAR11_0477 - cold shock protein 475 29.26 0 467248..468645 + 465 71083184 hisS SAR11_0478 - histidyl-tRNA synthetase 476 27.26 0 468623..469675 + 350 71083185 hisZ SAR11_0479 - ATP phosphoribosyltransferase regulatory subunit 477 28.55 0 469675..470364 + 229 71083186 hisG SAR11_0480 - ATP phosphoribosyltransferase catalytic subunit 478 32.06 0 470546..471643 + 365 71083187 rmuC SAR11_0481 - DNA recombination protein 479 32.71 0 471726..472370 + 214 71083188 - SAR11_0482 - hypothetical protein 480 31.65 0 472372..473799 + 475 71083189 sbcB SAR11_0483 - exodeoxyribonuclease I 481 33.96 +1 473875..474192 + 105 71083190 trxA SAR11_0484 - thioredoxin 1 482 27.74 0 474189..475457 - 422 71083191 folC SAR11_0485 - FolC bifunctional protein (folylpolyglutamate synthase/dihydrofolate synthase) 483 33.55 +1 475411..476340 - 309 71083192 accD SAR11_0486 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta 484 28.70 0 476337..477134 - 265 71083193 trpA SAR11_0487 - tryptophan synthase subunit alpha 485 33.74 +1 477136..478368 - 410 71083194 trpB SAR11_0488 - tryptophan synthase subunit beta 486 25.40 0 478358..478987 - 209 71083195 trpF SAR11_0489 - N-(5'-phosphoribosyl)anthranilate isomerase 487 27.85 0 478984..479676 - 230 71083196 pyrF SAR11_0490 - orotidine 5'-phosphate decarboxylase 488 28.87 0 479666..479956 - 96 71083197 himD SAR11_0491 - integration host factor beta-subunit (IHF-beta) 489 30.62 0 479960..481690 - 576 71083198 rpsA SAR11_0492 - 30S ribosomal protein S1 490 26.45 0 481690..482343 - 217 71083199 cmk SAR11_0493 - cytidylate kinase 491 26.85 0 482340..483527 - 395 71083200 aroA SAR11_0494 - 3-phosphoshikimate 1-carboxyvinyltransferase 492 30.37 0 483672..484448 - 258 71083201 yhbG SAR11_0495 - sulfate/thiosulfate import ATP-binding protein cysA 493 25.64 0 484450..485034 - 194 71083202 - SAR11_0496 - hypothetical protein 494 28.19 0 485035..486006 - 323 71083203 gutQ SAR11_0497 - arabinose 5-phosphate isomerase 495 29.74 0 486007..486618 - 203 71083204 rnd SAR11_0498 - ribonuclease D 496 28.59 0 486635..487603 + 322 71083205 - SAR11_0499 - NADH-ubiquinone oxireductase 497 31.94 0 487775..488275 - 166 71083206 - SAR11_0500 - hypothetical protein 498 29.48 0 488408..489211 + 267 71083207 - SAR11_0501 - YadH-like ABC-2-type transport protein 499 28.79 0 489215..490381 + 388 71083208 argD SAR11_0502 - acetylornithine aminotransferase 29.30 MEAN 4.13 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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