IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
390	 33.59	+1	386111..386503	-	130	71083099	-	SAR11_0394	-	hypothetical protein
391	 34.36	+1	386597..387373	-	258	71083100	fabI	SAR11_0395	-	enoyl-[acyl-carrier-protein] reductase (NADH2)
392	 36.39	+1	387383..388594	-	403	71083101	fabB	SAR11_0396	-	3-oxoacyl-[acyl-carrier-protein] synthase
393	 37.13	+1	388594..389094	-	166	71083102	fabA	SAR11_0397	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
394	 25.87	0	389168..389596	+	142	71083103	-	SAR11_0398	-	ferric uptake regulator family protein
395	 37.89	+2	389701..390117	+	138	71083104	rbr	SAR11_0399	-	rubrerythrin
396	 32.81	0	390175..391506	+	443	71083105	glpC	SAR11_0400	-	anaerobic glycerol-3-phosphate dehydrogenase subunit C
397	 29.80	0	391509..392102	+	197	71083106	-	SAR11_0401	-	hypothetical protein
398	 23.56	-1	392095..392544	-	149	71083107	-	SAR11_0402	-	hypothetical protein
399	 24.87	-1	392541..393296	-	251	71083108	moeB	SAR11_0403	-	molybdopterin biosynthesis protein
400	 34.75	+1	393293..393646	-	117	71083109	dut	SAR11_0404	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
401	 28.44	0	393737..394942	-	401	71083110	dfp	SAR11_0405	-	phosphopantothenoylcysteine decarboxylase
402	 30.85	0	394951..396318	-	455	71083111	aarF	SAR11_0406	-	ubiquinone biosynthesis protein
403	 28.09	0	396519..397223	-	234	71083112	ubiE	SAR11_0407	-	ubiquinone/menaquinone biosynthesis methyltransferase
404	 23.26	-1	397259..398122	+	287	71083113	mutM	SAR11_0408	-	formamidopyrimidine-DNA glycosylase
405	 30.27	0	398173..398433	+	86	71083114	rpsT	SAR11_0409	-	ribosomal protein S20
406	 26.59	0	398915..400249	+	444	71083115	dnaA	SAR11_0410	-	chromosomal replication initiator protein
407	 25.48	0	400461..401351	+	296	71083116	dnaN	SAR11_0411	-	DNA polymerase III
408	 26.21	0	401348..402049	-	233	71083117	plsC	SAR11_0412	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
409	 25.76	0	402062..403276	-	404	71083118	lysA	SAR11_0413	-	diaminopimelate decarboxylase
410	 26.50	0	403276..403392	-	38	71083119	-	SAR11_0414	-	hypothetical protein
411	 26.71	0	403394..404782	-	462	71083120	argH	SAR11_0415	-	argininosuccinate lyase
412	 25.39	0	404807..405322	+	171	71083121	tlpA	SAR11_0416	-	thiol:disulfide interchange protein
413	 33.33	0	405365..405535	+	56	71083122	-	SAR11_1725	-	hypothetical protein
414	 27.94	0	405618..406229	+	203	71083123	-	SAR11_0417	-	putative serine esterase
415	 31.75	0	406281..406847	+	188	71083124	mcrA	SAR11_0418	-	5-methylcytosine-specific restriction enzyme A
416	 28.28	0	406848..407381	-	177	71083125	coq7	SAR11_0419	-	Coq7 family protein
417	 23.95	-1	407365..407865	-	166	71083126	dsbB	SAR11_0420	-	disulfide bond formation protein
418	 27.47	0	407852..408448	-	198	71083127	dedA	SAR11_0421	-	DedA family protein
419	 27.01	0	408798..410315	+	505	71083128	faa1	SAR11_0422	-	putative long-chain-fatty-acid--CoA ligase (long-chain acyl-CoA synthetase)
420	 29.44	0	410672..411571	-	299	71083129	carD	SAR11_0423	-	hypothetical protein
421	 33.64	+1	411528..411854	-	108	71083130	fdxA	SAR11_0424	-	ferredoxin
422	 28.64	0	411851..412276	-	141	71083131	-	SAR11_0425	-	hypothetical protein
423	 27.85	0	412276..414756	-	826	71083132	suv3	SAR11_0426	-	ATP-dependent helicase
424	 27.39	0	414886..415407	-	173	71083133	-	SAR11_0427	-	thioesterase superfamily protein
425	 32.91	0	415586..416773	+	395	71083134	thlA	SAR11_0428	-	Acetyl-CoA acetyltransferase
426	 33.89	+1	416904..419942	+	1012	71083135	aceE	SAR11_0429	-	pyruvate dehydrogenase (lipoamide) e1 component
427	 29.72	0	419944..421215	+	423	71083136	aceF	SAR11_0430	-	dihydrolipoamide S-acetyltransferase
428	 29.05	0	421222..422109	+	295	71083137	ydeD	SAR11_0431	-	transporter
429	 26.46	0	422106..422876	-	256	71083138	bacA	SAR11_0432	-	bacitracin resistance protein (putative undecaprenol kinase)
430	 34.31	+1	423061..424500	+	479	71083139	gltD	SAR11_0433	-	putative oxidoreductase
431	 32.25	0	424500..429005	+	1501	71083140	gltB	SAR11_0434	-	glutamate synthase large subunit
432	 25.57	0	429007..429882	+	291	71083141	-	SAR11_0435	-	nucleoside-diphosphate-sugar epimerase
433	 25.99	0	429853..430506	-	217	71083142	-	SAR11_0436	-	alpha/beta hydrolase fold protein
434	 28.48	0	430651..431805	+	384	71083143	capM	SAR11_0437	-	glycosyl transferase
435	 31.40	0	431806..433722	+	638	71083144	thrS	SAR11_0438	-	threonyl-tRNA synthetase
436	 29.49	0	433723..434268	+	181	71083145	infC	SAR11_0439	-	translation initiation factor IF-3
437	 31.40	0	434322..434528	+	68	71083146	rpmI	SAR11_0440	-	50S ribosomal protein L35
438	 32.21	0	434530..434886	+	118	71083147	rplT	SAR11_0441	-	50S ribosomal protein L20
439	 29.40	0	434930..435997	+	355	71083148	pheS	SAR11_0442	-	phenylalanyl-tRNA synthetase subunit alpha
440	 29.51	0	435994..438402	+	802	71083149	pheT	SAR11_0443	-	phenylalanine-tRNA ligase
441	 32.17	0	438405..440213	+	602	71083150	lepA	SAR11_0444	-	GTP-binding protein LepA
442	 20.36	-2	440311..441081	-	256	71083151	-	SAR11_0445	-	methyltransferase FkbM
443	 29.93	0	441234..443291	+	685	71083152	gyrB	SAR11_0446	-	DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B)
444	 26.39	0	443294..444574	+	426	71083153	regB	SAR11_0447	-	sensor histidine kinase
445	 28.36	0	444571..446379	-	602	71083154	cobT	SAR11_0448	-	cobalamin biosynthesis protein CobT
446	 32.21	0	446380..447354	-	324	71083155	cobS	SAR11_0449	-	cobalamin biosynthesis protein CobS
447	 28.79	0	447344..447871	-	175	71083156	-	SAR11_0450	-	molecular chaperone
448	 19.44	-2	447870..448157	+	95	71083157	-	SAR11_0451	-	BolA-like protein
449	 25.11	-1	448146..449252	-	368	71083158	aroB	SAR11_0452	-	3-dehydroquinate synthase
450	 25.54	0	449239..449751	-	170	71083159	aroK	SAR11_0453	-	shikimate kinase
451	 25.42	0	449810..449986	+	58	71083160	-	SAR11_0454	-	hypothetical protein
452	 25.79	0	450066..451721	+	551	71083161	-	SAR11_0455	-	hypothetical protein
453	 28.90	0	451748..452266	+	172	71083162	def	SAR11_0456	-	peptide deformylase
454	 28.40	0	452267..453199	+	310	71083163	fmt	SAR11_0457	-	methionyl-tRNA formyltransferase
455	 26.18	0	453192..453932	+	246	71083164	truA	SAR11_0458	-	tRNA pseudouridine synthase A
456	 28.75	0	453922..454401	-	159	71083165	set1	SAR11_0459	-	nuclear protein SET
457	 30.32	0	454433..455362	-	309	71083166	acuC	SAR11_0460	-	histone deacetylase family protein
458	 27.18	0	455363..455557	-	64	71083167	-	SAR11_0461	-	hypothetical protein
459	 27.97	0	455557..456711	-	384	71083168	dapE	SAR11_0462	-	succinyl-diaminopimelate desuccinylase
460	 33.82	+1	456712..457539	-	275	71083169	dapD	SAR11_0463	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
461	 26.49	0	457569..458240	-	223	71083170	-	SAR11_0464	-	HAD-superfamily hydrolase
462	 29.30	0	458237..459103	-	288	71083171	argB	SAR11_0465	-	acetylglutamate kinase
463	 30.77	0	459104..460780	-	558	71083172	yidC	SAR11_0466	-	putative inner membrane protein translocase component YidC
464	 30.56	0	460780..461031	-	83	71083173	-	SAR11_0467	-	hypothetical protein
465	 23.19	-1	461031..461375	-	114	71083174	-	SAR11_0468	-	ribonuclease P protein
466	 25.69	0	461643..462362	+	239	71083175	-	SAR11_0469	-	DedA family protein
467	 33.33	0	462540..462737	+	65	71083176	-	SAR11_0470	-	hypothetical protein
468	 17.65	-2	462737..462838	+	33	71083177	-	SAR11_0471	-	hypothetical protein
469	 32.97	0	462838..463395	+	185	71083178	dcd	SAR11_0472	-	deoxycytidine triphosphate deaminase
470	 30.30	0	463398..464651	+	417	71083179	murA	SAR11_0473	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
471	 24.75	-1	464651..465046	+	131	71083180	-	SAR11_0474	-	hypothetical protein
472	 29.68	0	465046..466332	+	428	71083181	hisD	SAR11_0475	-	histidinol dehydrogenase
473	 36.57	+1	466335..466550	+	71	71083182	infA	SAR11_0476	-	translation initiation factor IF-1
474	 36.15	+1	466720..466932	+	70	71083183	cspE	SAR11_0477	-	cold shock protein
475	 29.26	0	467248..468645	+	465	71083184	hisS	SAR11_0478	-	histidyl-tRNA synthetase
476	 27.26	0	468623..469675	+	350	71083185	hisZ	SAR11_0479	-	ATP phosphoribosyltransferase regulatory subunit
477	 28.55	0	469675..470364	+	229	71083186	hisG	SAR11_0480	-	ATP phosphoribosyltransferase catalytic subunit
478	 32.06	0	470546..471643	+	365	71083187	rmuC	SAR11_0481	-	DNA recombination protein
479	 32.71	0	471726..472370	+	214	71083188	-	SAR11_0482	-	hypothetical protein
480	 31.65	0	472372..473799	+	475	71083189	sbcB	SAR11_0483	-	exodeoxyribonuclease I
481	 33.96	+1	473875..474192	+	105	71083190	trxA	SAR11_0484	-	thioredoxin 1
482	 27.74	0	474189..475457	-	422	71083191	folC	SAR11_0485	-	FolC bifunctional protein (folylpolyglutamate synthase/dihydrofolate synthase)
483	 33.55	+1	475411..476340	-	309	71083192	accD	SAR11_0486	-	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
484	 28.70	0	476337..477134	-	265	71083193	trpA	SAR11_0487	-	tryptophan synthase subunit alpha
485	 33.74	+1	477136..478368	-	410	71083194	trpB	SAR11_0488	-	tryptophan synthase subunit beta
486	 25.40	0	478358..478987	-	209	71083195	trpF	SAR11_0489	-	N-(5'-phosphoribosyl)anthranilate isomerase
487	 27.85	0	478984..479676	-	230	71083196	pyrF	SAR11_0490	-	orotidine 5'-phosphate decarboxylase
488	 28.87	0	479666..479956	-	96	71083197	himD	SAR11_0491	-	integration host factor beta-subunit (IHF-beta)
489	 30.62	0	479960..481690	-	576	71083198	rpsA	SAR11_0492	-	30S ribosomal protein S1
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.