IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
360	 19.59	-2	354747..355328	+	193	71083069	-	SAR11_0363	-	Bipartite response regulator
361	 30.54	0	355334..356263	-	309	71083070	frk	SAR11_0364	-	fructokinase
362	 30.58	0	356265..356918	-	217	71083071	nth	SAR11_0365	-	endonuclease III
363	 27.28	0	356918..357694	-	258	71083072	dapB	SAR11_0366	-	dihydrodipicolinate reductase
364	 35.54	+1	357731..358861	-	376	71083073	-	SAR11_0367	-	chaperone protein
365	 34.00	+1	358894..360837	-	647	71083074	dnaK	SAR11_0368	-	chaperone protein
366	 27.81	0	360900..361352	-	150	71083075	grpE	SAR11_0369	-	GrpE protein (HSP-70 cofactor)
367	 26.70	0	361572..362174	+	200	71083076	-	SAR11_0370	-	HAM1-like protein
368	 26.48	0	362158..363309	-	383	71083077	-	SAR11_0371	-	transmembrane receptor
369	 25.93	0	363342..364205	+	287	71083078	-	SAR11_0372	-	methylase or methyltransferase
370	 27.61	0	364195..364788	+	197	71083079	-	SAR11_0374	-	phospholipid-binding domain-containing protein
371	 33.33	0	364785..367073	-	762	162286707	maeB	SAR11_0375	-	malic enzyme
372	 25.74	0	367124..368650	+	508	71083081	mviN	SAR11_0376	-	virulence factor MVIN-like
373	 28.24	0	368652..369653	+	333	71083082	trpS	SAR11_0377	-	tryptophanyl-tRNA synthetase
374	 30.20	0	369707..370249	+	180	71083083	-	SAR11_0378	-	NifU-like domain-containing protein
375	 27.42	0	370252..371367	+	371	71083084	bax	SAR11_0379	-	Bax protein (hydrolyses peptidoglycan)
376	 26.82	0	371364..372284	-	306	71083085	cda1	SAR11_0380	-	polysaccharide deacetylase
377	 21.45	-1	372370..372756	+	128	71083086	-	SAR11_0381	-	hypothetical protein
378	 29.44	0	372766..373176	+	136	71083087	fur	SAR11_0382	-	ferric uptake regulation protein
379	 27.37	0	373181..374521	+	446	71083088	miaB	SAR11_0383	-	tRNA-i(6)A37 modification enzyme
380	 28.84	0	374524..375525	+	333	71083089	phoH	SAR11_0384	-	PhoH-like protein
381	 19.91	-2	375518..375979	+	153	71083090	-	SAR11_0385	-	hypothetical protein
382	 23.37	-1	375981..377525	+	514	71083091	lnt	SAR11_0386	-	apolipoprotein N-acyltransferase (copper homeostasis protein)
383	 33.76	+1	377518..378687	+	389	71083092	metK	SAR11_0387	-	S-adenosylmethionine synthetase
384	 30.57	0	378786..380339	+	517	71083093	nusA	SAR11_0388	-	transcription termination factor
385	 33.70	+1	380350..382554	+	734	71083094	infB	SAR11_0389	-	protein translation initiation factor 2
386	 29.00	0	382554..382922	+	122	71083095	rbfA	SAR11_0390	-	ribosome-binding factor A
387	 25.70	0	382936..383184	+	82	71083096	-	SAR11_0391	-	ribosomal protein S15
388	 34.68	+1	383206..385278	+	690	71083097	pnp	SAR11_0392	-	polynucleotide phosphorylase/polyadenylase
389	 20.98	-2	385353..386048	+	231	71083098	-	SAR11_0393	-	putative SAM-dependent methyltransferase
390	 33.59	+1	386111..386503	-	130	71083099	-	SAR11_0394	-	hypothetical protein
391	 34.36	+1	386597..387373	-	258	71083100	fabI	SAR11_0395	-	enoyl-[acyl-carrier-protein] reductase (NADH2)
392	 36.39	+1	387383..388594	-	403	71083101	fabB	SAR11_0396	-	3-oxoacyl-[acyl-carrier-protein] synthase
393	 37.13	+1	388594..389094	-	166	71083102	fabA	SAR11_0397	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
394	 25.87	0	389168..389596	+	142	71083103	-	SAR11_0398	-	ferric uptake regulator family protein
395	 37.89	+2	389701..390117	+	138	71083104	rbr	SAR11_0399	-	rubrerythrin
396	 32.81	0	390175..391506	+	443	71083105	glpC	SAR11_0400	-	anaerobic glycerol-3-phosphate dehydrogenase subunit C
397	 29.80	0	391509..392102	+	197	71083106	-	SAR11_0401	-	hypothetical protein
398	 23.56	-1	392095..392544	-	149	71083107	-	SAR11_0402	-	hypothetical protein
399	 24.87	-1	392541..393296	-	251	71083108	moeB	SAR11_0403	-	molybdopterin biosynthesis protein
400	 34.75	+1	393293..393646	-	117	71083109	dut	SAR11_0404	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
401	 28.44	0	393737..394942	-	401	71083110	dfp	SAR11_0405	-	phosphopantothenoylcysteine decarboxylase
402	 30.85	0	394951..396318	-	455	71083111	aarF	SAR11_0406	-	ubiquinone biosynthesis protein
403	 28.09	0	396519..397223	-	234	71083112	ubiE	SAR11_0407	-	ubiquinone/menaquinone biosynthesis methyltransferase
404	 23.26	-1	397259..398122	+	287	71083113	mutM	SAR11_0408	-	formamidopyrimidine-DNA glycosylase
405	 30.27	0	398173..398433	+	86	71083114	rpsT	SAR11_0409	-	ribosomal protein S20
406	 26.59	0	398915..400249	+	444	71083115	dnaA	SAR11_0410	-	chromosomal replication initiator protein
407	 25.48	0	400461..401351	+	296	71083116	dnaN	SAR11_0411	-	DNA polymerase III
408	 26.21	0	401348..402049	-	233	71083117	plsC	SAR11_0412	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
409	 25.76	0	402062..403276	-	404	71083118	lysA	SAR11_0413	-	diaminopimelate decarboxylase
410	 26.50	0	403276..403392	-	38	71083119	-	SAR11_0414	-	hypothetical protein
411	 26.71	0	403394..404782	-	462	71083120	argH	SAR11_0415	-	argininosuccinate lyase
412	 25.39	0	404807..405322	+	171	71083121	tlpA	SAR11_0416	-	thiol:disulfide interchange protein
413	 33.33	0	405365..405535	+	56	71083122	-	SAR11_1725	-	hypothetical protein
414	 27.94	0	405618..406229	+	203	71083123	-	SAR11_0417	-	putative serine esterase
415	 31.75	0	406281..406847	+	188	71083124	mcrA	SAR11_0418	-	5-methylcytosine-specific restriction enzyme A
416	 28.28	0	406848..407381	-	177	71083125	coq7	SAR11_0419	-	Coq7 family protein
417	 23.95	-1	407365..407865	-	166	71083126	dsbB	SAR11_0420	-	disulfide bond formation protein
418	 27.47	0	407852..408448	-	198	71083127	dedA	SAR11_0421	-	DedA family protein
419	 27.01	0	408798..410315	+	505	71083128	faa1	SAR11_0422	-	putative long-chain-fatty-acid--CoA ligase (long-chain acyl-CoA synthetase)
420	 29.44	0	410672..411571	-	299	71083129	carD	SAR11_0423	-	hypothetical protein
421	 33.64	+1	411528..411854	-	108	71083130	fdxA	SAR11_0424	-	ferredoxin
422	 28.64	0	411851..412276	-	141	71083131	-	SAR11_0425	-	hypothetical protein
423	 27.85	0	412276..414756	-	826	71083132	suv3	SAR11_0426	-	ATP-dependent helicase
424	 27.39	0	414886..415407	-	173	71083133	-	SAR11_0427	-	thioesterase superfamily protein
425	 32.91	0	415586..416773	+	395	71083134	thlA	SAR11_0428	-	Acetyl-CoA acetyltransferase
426	 33.89	+1	416904..419942	+	1012	71083135	aceE	SAR11_0429	-	pyruvate dehydrogenase (lipoamide) e1 component
427	 29.72	0	419944..421215	+	423	71083136	aceF	SAR11_0430	-	dihydrolipoamide S-acetyltransferase
428	 29.05	0	421222..422109	+	295	71083137	ydeD	SAR11_0431	-	transporter
429	 26.46	0	422106..422876	-	256	71083138	bacA	SAR11_0432	-	bacitracin resistance protein (putative undecaprenol kinase)
430	 34.31	+1	423061..424500	+	479	71083139	gltD	SAR11_0433	-	putative oxidoreductase
431	 32.25	0	424500..429005	+	1501	71083140	gltB	SAR11_0434	-	glutamate synthase large subunit
432	 25.57	0	429007..429882	+	291	71083141	-	SAR11_0435	-	nucleoside-diphosphate-sugar epimerase
433	 25.99	0	429853..430506	-	217	71083142	-	SAR11_0436	-	alpha/beta hydrolase fold protein
434	 28.48	0	430651..431805	+	384	71083143	capM	SAR11_0437	-	glycosyl transferase
435	 31.40	0	431806..433722	+	638	71083144	thrS	SAR11_0438	-	threonyl-tRNA synthetase
436	 29.49	0	433723..434268	+	181	71083145	infC	SAR11_0439	-	translation initiation factor IF-3
437	 31.40	0	434322..434528	+	68	71083146	rpmI	SAR11_0440	-	50S ribosomal protein L35
438	 32.21	0	434530..434886	+	118	71083147	rplT	SAR11_0441	-	50S ribosomal protein L20
439	 29.40	0	434930..435997	+	355	71083148	pheS	SAR11_0442	-	phenylalanyl-tRNA synthetase subunit alpha
440	 29.51	0	435994..438402	+	802	71083149	pheT	SAR11_0443	-	phenylalanine-tRNA ligase
441	 32.17	0	438405..440213	+	602	71083150	lepA	SAR11_0444	-	GTP-binding protein LepA
442	 20.36	-2	440311..441081	-	256	71083151	-	SAR11_0445	-	methyltransferase FkbM
443	 29.93	0	441234..443291	+	685	71083152	gyrB	SAR11_0446	-	DNA topoisomerase (ATP-hydrolyzing) chain B (DNA gyrase B)
444	 26.39	0	443294..444574	+	426	71083153	regB	SAR11_0447	-	sensor histidine kinase
445	 28.36	0	444571..446379	-	602	71083154	cobT	SAR11_0448	-	cobalamin biosynthesis protein CobT
446	 32.21	0	446380..447354	-	324	71083155	cobS	SAR11_0449	-	cobalamin biosynthesis protein CobS
447	 28.79	0	447344..447871	-	175	71083156	-	SAR11_0450	-	molecular chaperone
448	 19.44	-2	447870..448157	+	95	71083157	-	SAR11_0451	-	BolA-like protein
449	 25.11	-1	448146..449252	-	368	71083158	aroB	SAR11_0452	-	3-dehydroquinate synthase
450	 25.54	0	449239..449751	-	170	71083159	aroK	SAR11_0453	-	shikimate kinase
451	 25.42	0	449810..449986	+	58	71083160	-	SAR11_0454	-	hypothetical protein
452	 25.79	0	450066..451721	+	551	71083161	-	SAR11_0455	-	hypothetical protein
453	 28.90	0	451748..452266	+	172	71083162	def	SAR11_0456	-	peptide deformylase
454	 28.40	0	452267..453199	+	310	71083163	fmt	SAR11_0457	-	methionyl-tRNA formyltransferase
455	 26.18	0	453192..453932	+	246	71083164	truA	SAR11_0458	-	tRNA pseudouridine synthase A
456	 28.75	0	453922..454401	-	159	71083165	set1	SAR11_0459	-	nuclear protein SET
457	 30.32	0	454433..455362	-	309	71083166	acuC	SAR11_0460	-	histone deacetylase family protein
458	 27.18	0	455363..455557	-	64	71083167	-	SAR11_0461	-	hypothetical protein
459	 27.97	0	455557..456711	-	384	71083168	dapE	SAR11_0462	-	succinyl-diaminopimelate desuccinylase
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.