version 1.0
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759 1354 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 339 25.56 0 333254..334051 - 265 71083048 aroE SAR11_0341 - shikimate 5-dehydrogenase 340 28.74 0 334048..334635 - 195 71083049 orfE SAR11_0342 - Maf-like protein 341 29.09 0 334628..335452 - 274 71083050 - SAR11_0343 - hypothetical protein 342 26.54 0 335797..336738 + 313 71083051 hemE SAR11_0344 - uroporphyrinogen decarboxylase 343 31.40 0 336739..337773 + 344 71083052 hemH SAR11_0346 - ferrochelatase 344 24.14 -1 337766..338200 + 144 71083053 - SAR11_0347 - cytochrome functioning/assembly related protein 345 33.88 +1 338267..339535 + 422 71083054 rho SAR11_0348 - transcription termination factor Rho 346 24.01 -1 339853..341526 + 557 71083055 - SAR11_0349 - O-linked N-acetylglucosamine transferase 347 30.03 0 341586..342917 + 443 71083056 trmE SAR11_0350 - tRNA modification GTPase 348 32.64 0 343083..344954 + 623 71083057 gidA SAR11_0351 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 349 23.21 -1 344954..345595 + 213 71083058 gidB SAR11_0352 - glucose inhibited division protein 350 34.84 +1 345604..346398 + 264 71083059 - SAR11_0353 - ParA family ATPase for plasmid partitioning and other plasmid related functions 351 28.03 0 346398..347246 + 282 71083060 parB SAR11_0354 - chromosome partitioning protein 352 22.69 -1 347236..348231 - 331 71083061 holA SAR11_0355 - DNA-directed DNA polymerase III 353 23.66 -1 348228..348692 - 154 71083062 - SAR11_0356 - hypothetical protein 354 29.74 0 348696..351230 - 844 71083063 leuS SAR11_0357 - leucyl-tRNA synthetase 355 30.29 0 351261..351818 - 185 71083064 - SAR11_0358 - hypothetical protein 356 38.59 +2 352028..353017 + 329 71083065 - SAR11_0359 - putative porin 357 23.76 -1 353054..353596 - 180 71083066 - SAR11_0360 - thiamine monophosphate synthase 358 27.34 0 353591..354241 + 216 71083067 yggS SAR11_0361 - hypothetical protein 359 25.56 0 354238..354726 - 162 71083068 - SAR11_0362 - hypothetical protein 360 19.59 -2 354747..355328 + 193 71083069 - SAR11_0363 - Bipartite response regulator 361 30.54 0 355334..356263 - 309 71083070 frk SAR11_0364 - fructokinase 362 30.58 0 356265..356918 - 217 71083071 nth SAR11_0365 - endonuclease III 363 27.28 0 356918..357694 - 258 71083072 dapB SAR11_0366 - dihydrodipicolinate reductase 364 35.54 +1 357731..358861 - 376 71083073 - SAR11_0367 - chaperone protein 365 34.00 +1 358894..360837 - 647 71083074 dnaK SAR11_0368 - chaperone protein 366 27.81 0 360900..361352 - 150 71083075 grpE SAR11_0369 - GrpE protein (HSP-70 cofactor) 367 26.70 0 361572..362174 + 200 71083076 - SAR11_0370 - HAM1-like protein 368 26.48 0 362158..363309 - 383 71083077 - SAR11_0371 - transmembrane receptor 369 25.93 0 363342..364205 + 287 71083078 - SAR11_0372 - methylase or methyltransferase 370 27.61 0 364195..364788 + 197 71083079 - SAR11_0374 - phospholipid-binding domain-containing protein 371 33.33 0 364785..367073 - 762 162286707 maeB SAR11_0375 - malic enzyme 372 25.74 0 367124..368650 + 508 71083081 mviN SAR11_0376 - virulence factor MVIN-like 373 28.24 0 368652..369653 + 333 71083082 trpS SAR11_0377 - tryptophanyl-tRNA synthetase 374 30.20 0 369707..370249 + 180 71083083 - SAR11_0378 - NifU-like domain-containing protein 375 27.42 0 370252..371367 + 371 71083084 bax SAR11_0379 - Bax protein (hydrolyses peptidoglycan) 376 26.82 0 371364..372284 - 306 71083085 cda1 SAR11_0380 - polysaccharide deacetylase 377 21.45 -1 372370..372756 + 128 71083086 - SAR11_0381 - hypothetical protein 378 29.44 0 372766..373176 + 136 71083087 fur SAR11_0382 - ferric uptake regulation protein 379 27.37 0 373181..374521 + 446 71083088 miaB SAR11_0383 - tRNA-i(6)A37 modification enzyme 380 28.84 0 374524..375525 + 333 71083089 phoH SAR11_0384 - PhoH-like protein 381 19.91 -2 375518..375979 + 153 71083090 - SAR11_0385 - hypothetical protein 382 23.37 -1 375981..377525 + 514 71083091 lnt SAR11_0386 - apolipoprotein N-acyltransferase (copper homeostasis protein) 383 33.76 +1 377518..378687 + 389 71083092 metK SAR11_0387 - S-adenosylmethionine synthetase 384 30.57 0 378786..380339 + 517 71083093 nusA SAR11_0388 - transcription termination factor 385 33.70 +1 380350..382554 + 734 71083094 infB SAR11_0389 - protein translation initiation factor 2 386 29.00 0 382554..382922 + 122 71083095 rbfA SAR11_0390 - ribosome-binding factor A 387 25.70 0 382936..383184 + 82 71083096 - SAR11_0391 - ribosomal protein S15 388 34.68 +1 383206..385278 + 690 71083097 pnp SAR11_0392 - polynucleotide phosphorylase/polyadenylase 389 20.98 -2 385353..386048 + 231 71083098 - SAR11_0393 - putative SAM-dependent methyltransferase 390 33.59 +1 386111..386503 - 130 71083099 - SAR11_0394 - hypothetical protein 391 34.36 +1 386597..387373 - 258 71083100 fabI SAR11_0395 - enoyl-[acyl-carrier-protein] reductase (NADH2) 392 36.39 +1 387383..388594 - 403 71083101 fabB SAR11_0396 - 3-oxoacyl-[acyl-carrier-protein] synthase 393 37.13 +1 388594..389094 - 166 71083102 fabA SAR11_0397 - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase 394 25.87 0 389168..389596 + 142 71083103 - SAR11_0398 - ferric uptake regulator family protein 395 37.89 +2 389701..390117 + 138 71083104 rbr SAR11_0399 - rubrerythrin 396 32.81 0 390175..391506 + 443 71083105 glpC SAR11_0400 - anaerobic glycerol-3-phosphate dehydrogenase subunit C 397 29.80 0 391509..392102 + 197 71083106 - SAR11_0401 - hypothetical protein 398 23.56 -1 392095..392544 - 149 71083107 - SAR11_0402 - hypothetical protein 399 24.87 -1 392541..393296 - 251 71083108 moeB SAR11_0403 - molybdopterin biosynthesis protein 400 34.75 +1 393293..393646 - 117 71083109 dut SAR11_0404 - deoxyuridine 5'-triphosphate nucleotidohydrolase 401 28.44 0 393737..394942 - 401 71083110 dfp SAR11_0405 - phosphopantothenoylcysteine decarboxylase 402 30.85 0 394951..396318 - 455 71083111 aarF SAR11_0406 - ubiquinone biosynthesis protein 403 28.09 0 396519..397223 - 234 71083112 ubiE SAR11_0407 - ubiquinone/menaquinone biosynthesis methyltransferase 404 23.26 -1 397259..398122 + 287 71083113 mutM SAR11_0408 - formamidopyrimidine-DNA glycosylase 405 30.27 0 398173..398433 + 86 71083114 rpsT SAR11_0409 - ribosomal protein S20 406 26.59 0 398915..400249 + 444 71083115 dnaA SAR11_0410 - chromosomal replication initiator protein 407 25.48 0 400461..401351 + 296 71083116 dnaN SAR11_0411 - DNA polymerase III 408 26.21 0 401348..402049 - 233 71083117 plsC SAR11_0412 - 1-acyl-sn-glycerol-3-phosphate acyltransferase 409 25.76 0 402062..403276 - 404 71083118 lysA SAR11_0413 - diaminopimelate decarboxylase 410 26.50 0 403276..403392 - 38 71083119 - SAR11_0414 - hypothetical protein 411 26.71 0 403394..404782 - 462 71083120 argH SAR11_0415 - argininosuccinate lyase 412 25.39 0 404807..405322 + 171 71083121 tlpA SAR11_0416 - thiol:disulfide interchange protein 413 33.33 0 405365..405535 + 56 71083122 - SAR11_1725 - hypothetical protein 414 27.94 0 405618..406229 + 203 71083123 - SAR11_0417 - putative serine esterase 415 31.75 0 406281..406847 + 188 71083124 mcrA SAR11_0418 - 5-methylcytosine-specific restriction enzyme A 416 28.28 0 406848..407381 - 177 71083125 coq7 SAR11_0419 - Coq7 family protein 417 23.95 -1 407365..407865 - 166 71083126 dsbB SAR11_0420 - disulfide bond formation protein 418 27.47 0 407852..408448 - 198 71083127 dedA SAR11_0421 - DedA family protein 419 27.01 0 408798..410315 + 505 71083128 faa1 SAR11_0422 - putative long-chain-fatty-acid--CoA ligase (long-chain acyl-CoA synthetase) 420 29.44 0 410672..411571 - 299 71083129 carD SAR11_0423 - hypothetical protein 421 33.64 +1 411528..411854 - 108 71083130 fdxA SAR11_0424 - ferredoxin 422 28.64 0 411851..412276 - 141 71083131 - SAR11_0425 - hypothetical protein 423 27.85 0 412276..414756 - 826 71083132 suv3 SAR11_0426 - ATP-dependent helicase 424 27.39 0 414886..415407 - 173 71083133 - SAR11_0427 - thioesterase superfamily protein 425 32.91 0 415586..416773 + 395 71083134 thlA SAR11_0428 - Acetyl-CoA acetyltransferase 426 33.89 +1 416904..419942 + 1012 71083135 aceE SAR11_0429 - pyruvate dehydrogenase (lipoamide) e1 component 427 29.72 0 419944..421215 + 423 71083136 aceF SAR11_0430 - dihydrolipoamide S-acetyltransferase 428 29.05 0 421222..422109 + 295 71083137 ydeD SAR11_0431 - transporter 429 26.46 0 422106..422876 - 256 71083138 bacA SAR11_0432 - bacitracin resistance protein (putative undecaprenol kinase) 430 34.31 +1 423061..424500 + 479 71083139 gltD SAR11_0433 - putative oxidoreductase 431 32.25 0 424500..429005 + 1501 71083140 gltB SAR11_0434 - glutamate synthase large subunit 432 25.57 0 429007..429882 + 291 71083141 - SAR11_0435 - nucleoside-diphosphate-sugar epimerase 433 25.99 0 429853..430506 - 217 71083142 - SAR11_0436 - alpha/beta hydrolase fold protein 434 28.48 0 430651..431805 + 384 71083143 capM SAR11_0437 - glycosyl transferase 435 31.40 0 431806..433722 + 638 71083144 thrS SAR11_0438 - threonyl-tRNA synthetase 436 29.49 0 433723..434268 + 181 71083145 infC SAR11_0439 - translation initiation factor IF-3 437 31.40 0 434322..434528 + 68 71083146 rpmI SAR11_0440 - 50S ribosomal protein L35 438 32.21 0 434530..434886 + 118 71083147 rplT SAR11_0441 - 50S ribosomal protein L20 29.30 MEAN 4.13 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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