IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
288	 31.02	0	291790..292827	+	345	71082997	tas	SAR11_0292	-	aldo/keto reductase-family protein
289	 31.16	0	292818..293324	+	168	71082998	-	SAR11_0293	-	hypothetical protein
290	 30.13	0	293329..294516	+	395	71082999	argG	SAR11_0294	-	argininosuccinate synthase (citrulline--aspartate ligase)
291	 27.67	0	294521..295138	+	205	71083000	frnE	SAR11_0295	-	polyketide biosynthesis dithiol-disulfide isomerase
292	 30.72	0	295195..295653	+	152	71083001	-	SAR11_0296	-	transmembrane protein
293	 29.66	0	295653..296033	+	126	71083002	-	SAR11_0297	-	phosphate-starvation-inducible E
294	 25.90	0	296040..297182	+	380	71083003	-	SAR11_0298	-	DNA photolyase-like protein
295	 33.78	+1	297179..297400	-	73	71083004	-	SAR11_0299	-	transmembrane protein
296	 29.44	0	297397..298116	-	239	71083005	-	SAR11_0300	-	glutamine amidotransferase class-I
297	 27.91	0	298160..298768	-	202	71083006	marC	SAR11_0301	-	marC family protein
298	 28.74	0	298810..299223	-	137	71083007	yqaA	SAR11_0302	-	putative transmembrane protein
299	 27.57	0	299342..300832	-	496	71083008	-	SAR11_0303	-	deoxyribodipyrimidine photolyase-related protein
300	 33.63	+1	300899..301570	+	223	71083009	-	SAR11_0304	-	short chain dehydrogenase
301	 29.67	0	301545..302636	+	363	71083010	yliI	SAR11_0305	-	glucose dehydrogenase (pyrroloquinoline-quinone) precursor
302	 29.63	0	302639..303691	-	350	71083011	-	SAR11_0306	-	hypothetical protein
303	 33.33	0	303706..304551	-	281	71083012	folD	SAR11_0307	-	methylenetetrahydrofolate dehydrogenase
304	 26.46	0	304560..304850	-	96	71083013	-	SAR11_1722	-	hypothetical protein
305	 29.28	0	304847..305932	-	361	71083014	-	SAR11_0308	-	mechanosensitive ion channel
306	 27.32	0	305935..306633	-	232	71083015	hemD	SAR11_0309	-	uroporphyrinogen III synthase HEM4
307	 28.79	0	306635..307558	-	307	71083016	hemC	SAR11_0310	-	hydroxymethylbilane synthase
308	 33.15	0	307618..308691	+	357	71083017	ygjD	SAR11_0311	-	O-sialoglycoprotein endopeptidase
309	 22.81	-1	308772..309617	+	281	71083018	-	SAR11_0312	-	sulfotransferase domain-containing protein
310	 31.16	0	309643..310056	+	137	71083019	-	SAR11_0313	-	hypothetical protein
311	 33.48	+1	310070..312115	+	681	71083020	acsA	SAR11_0314	-	acetyl-CoA synthase
312	 27.56	0	312112..312735	-	207	71083021	-	SAR11_0315	-	potential esterase
313	 37.16	+1	312873..313133	+	86	71083022	-	SAR11_1723	-	hypothetical protein
314	 39.30	+2	313133..314941	+	602	71083023	yjcG	SAR11_0316	-	SSF family Na(+)/solute symporter
315	 27.45	0	315020..315376	+	118	71083024	-	SAR11_1724	-	YGGT family protein
316	 28.03	0	315405..316064	+	219	71083025	rpe	SAR11_0317	-	ribulose-phosphate 3-epimerase
317	 24.83	-1	316069..317679	+	536	71083026	-	SAR11_0318	-	hypothetical protein
318	 27.67	0	317679..319214	+	511	71083027	purH	SAR11_0319	-	bifunctional purine biosynthesis protein
319	 22.90	-1	319204..319548	-	114	71083028	phhB	SAR11_0321	-	putative pterin-4-alpha-carbinolamine dehydratase
320	 26.32	0	319743..320384	+	213	71083029	-	SAR11_0322	-	hypothetical protein
321	 20.72	-2	320387..321520	-	377	71083030	ubiH	SAR11_0323	-	putative ubiquinone biosynthesis monooxgenase COQ6
322	 30.37	0	321546..323636	+	696	71083031	ftsK	SAR11_0324	-	cell division protein
323	 21.62	-1	323636..324190	+	184	71083032	-	SAR11_0325	-	Outer membrane lipoprotein carrier protein
324	 27.98	0	324191..324694	-	167	71083033	-	SAR11_0326	-	putative acetyltransferase
325	 29.23	0	324691..325056	-	121	71083034	-	SAR11_0327	-	histidine triad (HIT) protein
326	 29.41	0	325056..325361	-	101	71083035	hisE	SAR11_0328	-	phosphoribosyl-ATP diphosphatase
327	 34.26	+1	325364..326119	-	251	71083036	hisF	SAR11_0329	-	imidazole glycerol phosphate synthase subunit of hisF
328	 28.75	0	326112..326831	-	239	71083037	hisA	SAR11_0330	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
329	 29.35	0	326834..327460	-	208	71083038	hisH	SAR11_0331	-	imidazole glycerol phosphate synthase subunit of hisH
330	 31.30	0	327466..328056	-	196	71083039	hisB	SAR11_0332	-	imidazoleglycerol-phosphate dehydratase
331	 34.88	+1	328148..328663	+	171	71083040	hslV	SAR11_0333	-	ATP-dependent protease peptidase subunit
332	 30.99	0	328663..330030	+	455	71083041	hslU	SAR11_0334	-	ATP-dependent protease ATP-binding subunit
333	 22.61	-1	330020..330541	-	173	71083042	-	SAR11_0335	-	Smr (small MutS related) protein
334	 27.44	0	330542..331135	-	197	71083043	-	SAR11_0336	-	translocase
335	 29.31	0	331194..331616	+	140	71083044	fxsA	SAR11_0337	-	cytoplasmic membrane protein
336	 24.59	-1	331600..332022	+	140	71083045	secB	SAR11_0338	-	protein export chaperone
337	 28.87	0	332015..332686	-	223	71083046	dnaQ	SAR11_0339	-	DNA polymerase III
338	 19.12	-2	332688..333257	-	189	71083047	coaE	SAR11_0340	-	dephospho-CoA kinase
339	 25.56	0	333254..334051	-	265	71083048	aroE	SAR11_0341	-	shikimate 5-dehydrogenase
340	 28.74	0	334048..334635	-	195	71083049	orfE	SAR11_0342	-	Maf-like protein
341	 29.09	0	334628..335452	-	274	71083050	-	SAR11_0343	-	hypothetical protein
342	 26.54	0	335797..336738	+	313	71083051	hemE	SAR11_0344	-	uroporphyrinogen decarboxylase
343	 31.40	0	336739..337773	+	344	71083052	hemH	SAR11_0346	-	ferrochelatase
344	 24.14	-1	337766..338200	+	144	71083053	-	SAR11_0347	-	cytochrome functioning/assembly related protein
345	 33.88	+1	338267..339535	+	422	71083054	rho	SAR11_0348	-	transcription termination factor Rho
346	 24.01	-1	339853..341526	+	557	71083055	-	SAR11_0349	-	O-linked N-acetylglucosamine transferase
347	 30.03	0	341586..342917	+	443	71083056	trmE	SAR11_0350	-	tRNA modification GTPase
348	 32.64	0	343083..344954	+	623	71083057	gidA	SAR11_0351	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
349	 23.21	-1	344954..345595	+	213	71083058	gidB	SAR11_0352	-	glucose inhibited division protein
350	 34.84	+1	345604..346398	+	264	71083059	-	SAR11_0353	-	ParA family ATPase for plasmid partitioning and other plasmid related functions
351	 28.03	0	346398..347246	+	282	71083060	parB	SAR11_0354	-	chromosome partitioning protein
352	 22.69	-1	347236..348231	-	331	71083061	holA	SAR11_0355	-	DNA-directed DNA polymerase III
353	 23.66	-1	348228..348692	-	154	71083062	-	SAR11_0356	-	hypothetical protein
354	 29.74	0	348696..351230	-	844	71083063	leuS	SAR11_0357	-	leucyl-tRNA synthetase
355	 30.29	0	351261..351818	-	185	71083064	-	SAR11_0358	-	hypothetical protein
356	 38.59	+2	352028..353017	+	329	71083065	-	SAR11_0359	-	putative porin
357	 23.76	-1	353054..353596	-	180	71083066	-	SAR11_0360	-	thiamine monophosphate synthase
358	 27.34	0	353591..354241	+	216	71083067	yggS	SAR11_0361	-	hypothetical protein
359	 25.56	0	354238..354726	-	162	71083068	-	SAR11_0362	-	hypothetical protein
360	 19.59	-2	354747..355328	+	193	71083069	-	SAR11_0363	-	Bipartite response regulator
361	 30.54	0	355334..356263	-	309	71083070	frk	SAR11_0364	-	fructokinase
362	 30.58	0	356265..356918	-	217	71083071	nth	SAR11_0365	-	endonuclease III
363	 27.28	0	356918..357694	-	258	71083072	dapB	SAR11_0366	-	dihydrodipicolinate reductase
364	 35.54	+1	357731..358861	-	376	71083073	-	SAR11_0367	-	chaperone protein
365	 34.00	+1	358894..360837	-	647	71083074	dnaK	SAR11_0368	-	chaperone protein
366	 27.81	0	360900..361352	-	150	71083075	grpE	SAR11_0369	-	GrpE protein (HSP-70 cofactor)
367	 26.70	0	361572..362174	+	200	71083076	-	SAR11_0370	-	HAM1-like protein
368	 26.48	0	362158..363309	-	383	71083077	-	SAR11_0371	-	transmembrane receptor
369	 25.93	0	363342..364205	+	287	71083078	-	SAR11_0372	-	methylase or methyltransferase
370	 27.61	0	364195..364788	+	197	71083079	-	SAR11_0374	-	phospholipid-binding domain-containing protein
371	 33.33	0	364785..367073	-	762	162286707	maeB	SAR11_0375	-	malic enzyme
372	 25.74	0	367124..368650	+	508	71083081	mviN	SAR11_0376	-	virulence factor MVIN-like
373	 28.24	0	368652..369653	+	333	71083082	trpS	SAR11_0377	-	tryptophanyl-tRNA synthetase
374	 30.20	0	369707..370249	+	180	71083083	-	SAR11_0378	-	NifU-like domain-containing protein
375	 27.42	0	370252..371367	+	371	71083084	bax	SAR11_0379	-	Bax protein (hydrolyses peptidoglycan)
376	 26.82	0	371364..372284	-	306	71083085	cda1	SAR11_0380	-	polysaccharide deacetylase
377	 21.45	-1	372370..372756	+	128	71083086	-	SAR11_0381	-	hypothetical protein
378	 29.44	0	372766..373176	+	136	71083087	fur	SAR11_0382	-	ferric uptake regulation protein
379	 27.37	0	373181..374521	+	446	71083088	miaB	SAR11_0383	-	tRNA-i(6)A37 modification enzyme
380	 28.84	0	374524..375525	+	333	71083089	phoH	SAR11_0384	-	PhoH-like protein
381	 19.91	-2	375518..375979	+	153	71083090	-	SAR11_0385	-	hypothetical protein
382	 23.37	-1	375981..377525	+	514	71083091	lnt	SAR11_0386	-	apolipoprotein N-acyltransferase (copper homeostasis protein)
383	 33.76	+1	377518..378687	+	389	71083092	metK	SAR11_0387	-	S-adenosylmethionine synthetase
384	 30.57	0	378786..380339	+	517	71083093	nusA	SAR11_0388	-	transcription termination factor
385	 33.70	+1	380350..382554	+	734	71083094	infB	SAR11_0389	-	protein translation initiation factor 2
386	 29.00	0	382554..382922	+	122	71083095	rbfA	SAR11_0390	-	ribosome-binding factor A
387	 25.70	0	382936..383184	+	82	71083096	-	SAR11_0391	-	ribosomal protein S15
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.