version 1.0
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759 1354 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 246 31.69 0 252166..253929 - 587 71082955 mmgC SAR11_0249 - acyl-CoA dehydrogenase 247 32.88 0 253956..255062 - 368 71082956 leuB SAR11_0250 - 3-isopropylmalate dehydrogenase 248 26.31 0 255049..255660 - 203 71082957 leuD SAR11_0251 - 3-isopropylmalate dehydratase 249 35.75 +1 255662..257065 - 467 71082958 leuC SAR11_0252 - isopropylmalate isomerase large subunit 250 29.49 0 257077..257571 - 164 71082959 rplS SAR11_0253 - 50S ribosomal protein L19 251 34.21 +1 257588..258274 - 228 71082960 trmD SAR11_0254 - tRNA (guanine-N(1)-)-methyltransferase 252 41.39 +2 258283..258816 - 177 71082961 rpsP SAR11_0255 - 30S ribosomal protein S16 253 33.77 +1 258831..260189 - 452 71082962 ffh SAR11_0256 - signal recognition particle protein 254 30.30 0 260349..261173 + 274 71082963 dapF SAR11_0257 - diaminopimelate epimerase (DAP epimerase) 255 30.83 0 261173..262090 + 305 71082964 ftsY SAR11_0258 - cell division particle 256 23.58 -1 262083..262646 - 187 71082965 - SAR11_0259 - hypothetical protein 257 29.53 0 262705..263598 - 297 71082966 - SAR11_0260 - transporter 258 32.78 0 263611..263790 - 59 71082967 - SAR11_0262 - transmembrane protein 259 32.81 0 263780..265117 - 445 71082968 - SAR11_0263 - amidase 260 33.99 +1 265128..266489 - 453 71082969 - SAR11_0264 - mannitol transporter 261 34.36 +1 266479..267063 - 194 71082970 - SAR11_0265 - mannitol transporter 262 39.46 +2 267155..268312 - 385 71082971 - SAR11_0266 - TRAP dicarboxylate transporter - DctP subunit (mannitol/chloroaromatic compounds) 263 29.98 0 268433..269506 - 357 71082972 msmX SAR11_0267 - ABC sugar transporter 264 29.81 0 269499..270578 - 359 71082973 msmX2 SAR11_0268 - ABC sugar transporter 265 31.45 0 270578..271426 - 282 71082974 ycjP SAR11_0269 - putative ABC transport protein 266 32.06 0 271429..272289 - 286 71082975 - SAR11_0270 - binding-protein dependent transport system inner membrane protein 267 36.78 +1 272358..273893 - 511 71082976 - SAR11_0271 - putative ABC transporter solute-binding protein 268 37.76 +2 273915..274772 - 285 71082977 adhP SAR11_0272 - alcohol dehydrogenase (Zn containing) (adh-5) 269 30.84 0 275137..276219 + 360 71082978 stc SAR11_0273 - transcriptional regulator 270 30.13 0 276222..277439 - 405 71082979 - SAR11_0274 - major facilitator superfamily transporter 271 32.60 0 277460..278413 - 317 71082980 - SAR11_0275 - dehydrogenase 272 29.55 0 278416..279711 - 431 71082981 glcF SAR11_0276 - (S)-2-hydroxy-acid oxidase 273 29.39 0 279711..280979 - 422 71082982 glcE SAR11_0277 - (S)-2-hydroxy-acid oxidase 274 33.73 +1 280945..282441 - 498 71082983 glcD SAR11_0278 - (S)-2-hydroxy-acid oxidase 275 34.11 +1 282447..283610 - 387 71082984 aspC SAR11_0279 - aspartate transaminase 276 33.77 +1 283684..284835 - 383 71082985 ildD SAR11_0280 - l-lactate dehydrogenase 277 28.43 0 284844..285353 - 169 71082986 - SAR11_0281 - hypothetical protein 278 22.83 -1 285354..285734 - 126 71082987 - SAR11_0282 - hypothetical protein 279 25.10 -1 285731..286252 - 173 71082988 ccmG SAR11_0283 - cytochrome C biogenesis protein ccmG 280 26.46 0 286249..288126 - 625 71082989 ccmF SAR11_0284 - cytochrome c-type biogenesis protein 281 26.67 0 288128..288547 - 139 71082990 ccmE SAR11_0285 - cytochrome c-type biogenesis protein 282 27.63 0 288558..288785 - 75 71082991 ccmD SAR11_0286 - Heme exporter protein D 283 30.52 0 288782..289492 - 236 71082992 ccmC SAR11_0287 - heme exporter protein 284 29.60 0 289675..289995 - 106 71082993 ccmB SAR11_0288 - hypothetical protein 285 30.43 0 290074..290625 + 183 71082994 yciB SAR11_0289 - intracellular septation protein A 286 25.22 0 290618..290962 + 114 71082995 - SAR11_0290 - hypothetical protein 287 31.62 0 290968..291666 - 232 71082996 ybhL SAR11_0291 - integral membrane protein 288 31.02 0 291790..292827 + 345 71082997 tas SAR11_0292 - aldo/keto reductase-family protein 289 31.16 0 292818..293324 + 168 71082998 - SAR11_0293 - hypothetical protein 290 30.13 0 293329..294516 + 395 71082999 argG SAR11_0294 - argininosuccinate synthase (citrulline--aspartate ligase) 291 27.67 0 294521..295138 + 205 71083000 frnE SAR11_0295 - polyketide biosynthesis dithiol-disulfide isomerase 292 30.72 0 295195..295653 + 152 71083001 - SAR11_0296 - transmembrane protein 293 29.66 0 295653..296033 + 126 71083002 - SAR11_0297 - phosphate-starvation-inducible E 294 25.90 0 296040..297182 + 380 71083003 - SAR11_0298 - DNA photolyase-like protein 295 33.78 +1 297179..297400 - 73 71083004 - SAR11_0299 - transmembrane protein 296 29.44 0 297397..298116 - 239 71083005 - SAR11_0300 - glutamine amidotransferase class-I 297 27.91 0 298160..298768 - 202 71083006 marC SAR11_0301 - marC family protein 298 28.74 0 298810..299223 - 137 71083007 yqaA SAR11_0302 - putative transmembrane protein 299 27.57 0 299342..300832 - 496 71083008 - SAR11_0303 - deoxyribodipyrimidine photolyase-related protein 300 33.63 +1 300899..301570 + 223 71083009 - SAR11_0304 - short chain dehydrogenase 301 29.67 0 301545..302636 + 363 71083010 yliI SAR11_0305 - glucose dehydrogenase (pyrroloquinoline-quinone) precursor 302 29.63 0 302639..303691 - 350 71083011 - SAR11_0306 - hypothetical protein 303 33.33 0 303706..304551 - 281 71083012 folD SAR11_0307 - methylenetetrahydrofolate dehydrogenase 304 26.46 0 304560..304850 - 96 71083013 - SAR11_1722 - hypothetical protein 305 29.28 0 304847..305932 - 361 71083014 - SAR11_0308 - mechanosensitive ion channel 306 27.32 0 305935..306633 - 232 71083015 hemD SAR11_0309 - uroporphyrinogen III synthase HEM4 307 28.79 0 306635..307558 - 307 71083016 hemC SAR11_0310 - hydroxymethylbilane synthase 308 33.15 0 307618..308691 + 357 71083017 ygjD SAR11_0311 - O-sialoglycoprotein endopeptidase 309 22.81 -1 308772..309617 + 281 71083018 - SAR11_0312 - sulfotransferase domain-containing protein 310 31.16 0 309643..310056 + 137 71083019 - SAR11_0313 - hypothetical protein 311 33.48 +1 310070..312115 + 681 71083020 acsA SAR11_0314 - acetyl-CoA synthase 312 27.56 0 312112..312735 - 207 71083021 - SAR11_0315 - potential esterase 313 37.16 +1 312873..313133 + 86 71083022 - SAR11_1723 - hypothetical protein 314 39.30 +2 313133..314941 + 602 71083023 yjcG SAR11_0316 - SSF family Na(+)/solute symporter 315 27.45 0 315020..315376 + 118 71083024 - SAR11_1724 - YGGT family protein 316 28.03 0 315405..316064 + 219 71083025 rpe SAR11_0317 - ribulose-phosphate 3-epimerase 317 24.83 -1 316069..317679 + 536 71083026 - SAR11_0318 - hypothetical protein 318 27.67 0 317679..319214 + 511 71083027 purH SAR11_0319 - bifunctional purine biosynthesis protein 319 22.90 -1 319204..319548 - 114 71083028 phhB SAR11_0321 - putative pterin-4-alpha-carbinolamine dehydratase 320 26.32 0 319743..320384 + 213 71083029 - SAR11_0322 - hypothetical protein 321 20.72 -2 320387..321520 - 377 71083030 ubiH SAR11_0323 - putative ubiquinone biosynthesis monooxgenase COQ6 322 30.37 0 321546..323636 + 696 71083031 ftsK SAR11_0324 - cell division protein 323 21.62 -1 323636..324190 + 184 71083032 - SAR11_0325 - Outer membrane lipoprotein carrier protein 324 27.98 0 324191..324694 - 167 71083033 - SAR11_0326 - putative acetyltransferase 325 29.23 0 324691..325056 - 121 71083034 - SAR11_0327 - histidine triad (HIT) protein 326 29.41 0 325056..325361 - 101 71083035 hisE SAR11_0328 - phosphoribosyl-ATP diphosphatase 327 34.26 +1 325364..326119 - 251 71083036 hisF SAR11_0329 - imidazole glycerol phosphate synthase subunit of hisF 328 28.75 0 326112..326831 - 239 71083037 hisA SAR11_0330 - phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 329 29.35 0 326834..327460 - 208 71083038 hisH SAR11_0331 - imidazole glycerol phosphate synthase subunit of hisH 330 31.30 0 327466..328056 - 196 71083039 hisB SAR11_0332 - imidazoleglycerol-phosphate dehydratase 331 34.88 +1 328148..328663 + 171 71083040 hslV SAR11_0333 - ATP-dependent protease peptidase subunit 332 30.99 0 328663..330030 + 455 71083041 hslU SAR11_0334 - ATP-dependent protease ATP-binding subunit 333 22.61 -1 330020..330541 - 173 71083042 - SAR11_0335 - Smr (small MutS related) protein 334 27.44 0 330542..331135 - 197 71083043 - SAR11_0336 - translocase 335 29.31 0 331194..331616 + 140 71083044 fxsA SAR11_0337 - cytoplasmic membrane protein 336 24.59 -1 331600..332022 + 140 71083045 secB SAR11_0338 - protein export chaperone 337 28.87 0 332015..332686 - 223 71083046 dnaQ SAR11_0339 - DNA polymerase III 338 19.12 -2 332688..333257 - 189 71083047 coaE SAR11_0340 - dephospho-CoA kinase 339 25.56 0 333254..334051 - 265 71083048 aroE SAR11_0341 - shikimate 5-dehydrogenase 340 28.74 0 334048..334635 - 195 71083049 orfE SAR11_0342 - Maf-like protein 341 29.09 0 334628..335452 - 274 71083050 - SAR11_0343 - hypothetical protein 342 26.54 0 335797..336738 + 313 71083051 hemE SAR11_0344 - uroporphyrinogen decarboxylase 343 31.40 0 336739..337773 + 344 71083052 hemH SAR11_0346 - ferrochelatase 344 24.14 -1 337766..338200 + 144 71083053 - SAR11_0347 - cytochrome functioning/assembly related protein 345 33.88 +1 338267..339535 + 422 71083054 rho SAR11_0348 - transcription termination factor Rho 29.30 MEAN 4.13 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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