version 1.0
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759 1354 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 181 35.02 +1 186287..186583 + 98 71082890 - SAR11_0185 - hypothetical protein 182 28.80 0 186570..187142 - 190 71082891 tag SAR11_0186 - DNA-3-methyladenine glycosylase I 183 30.96 0 187198..188082 - 294 71082892 - SAR11_0187 - DMT family permease 184 29.50 0 188118..188561 + 147 71082893 msrB SAR11_0188 - peptide methionine sulfoxide reductase 185 28.04 0 188563..189375 + 270 71082894 sseA SAR11_0189 - thiosulfate sulfurtransferase 186 27.13 0 189379..190248 + 289 71082895 yhil SAR11_0190 - HlyD family-like protein 187 31.25 0 190248..193370 + 1040 71082896 - SAR11_0191 - AcrB/AcrD/AcrF family protein (acriflavin resistance) 188 28.33 0 193367..193966 - 199 71082897 - SAR11_0192 - soluble lytic murein transglycosylase 189 23.33 -1 193953..194342 - 129 71082898 - SAR11_1720 - unknown membrane protein 190 29.85 0 194401..195117 + 238 71082899 gpmA SAR11_0193 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 191 21.88 -1 195106..195795 - 229 71082900 - SAR11_0194 - nucleotidyltransferase family protein 192 23.50 -1 195792..196757 - 321 71082901 - SAR11_0195 - phosphotransferase enzyme family protein 193 27.67 0 196761..197219 - 152 71082902 - SAR11_0196 - cell division control protein 6 194 34.50 +1 197203..198489 - 428 71082903 ahcY SAR11_0197 - S-adenosyl-L-homocysteine hydrolase 195 24.63 -1 198533..200071 - 512 71082904 chvG SAR11_0198 - two-component sensor histidine kinase 196 29.66 0 200071..200778 - 235 71082905 chvI SAR11_0199 - two-component system response regulator 197 29.48 0 200829..203603 - 924 71082906 polA SAR11_0200 - DNA polymerase I 198 29.57 0 203654..204583 + 309 71082907 - SAR11_0201 - YadG-like ABC transporter protein 199 27.36 0 204616..205167 + 183 71082908 - SAR11_0202 - biotin synthase 200 35.28 +1 205160..205723 - 187 71082909 - SAR11_0203 - response regulator 201 30.03 0 205872..207050 + 392 71082910 speC SAR11_0204 - lysine/ornithine decarboxylase 202 30.94 0 207050..208093 + 347 71082911 dys2 SAR11_0205 - deoxyhypusine synthase-like protein 203 28.65 0 208096..208971 + 291 71082912 speB1 SAR11_0206 - arginase 204 29.37 0 208968..209522 - 184 71082913 yhhQ SAR11_0207 - hypothetical protein 205 26.23 0 209522..209845 - 107 71082914 rpmB SAR11_0208 - 50S ribosomal protein L28 206 30.20 0 209899..210951 - 350 71082915 pyrD SAR11_0209 - dihydroorotate dehydrogenase 207 29.78 0 210951..212528 - 525 71082916 lysK SAR11_0210 - lysyl-tRNA synthetase 208 27.87 0 212604..214049 + 481 71082917 trkH SAR11_0211 - potassium uptake protein 209 33.41 0 214052..215428 + 458 71082918 ampG SAR11_0213 - muropeptide permease 210 21.15 -1 215418..216164 + 248 71082919 - SAR11_0214 - hypothetical protein 211 23.75 -1 216161..217057 - 298 71082920 tyrA SAR11_0215 - prephenate dehydrogenase 212 26.96 0 217060..218142 - 360 71082921 hisC SAR11_0216 - histidinol-phosphate aminotransferase 213 31.19 0 218334..219452 + 372 71082922 metX SAR11_0217 - homoserine O-acetyltransferase 214 26.13 0 219455..220051 + 198 71082923 metW SAR11_0218 - methionine biosynthesis protein 215 29.17 0 220052..220771 + 239 71082924 gloB SAR11_0219 - hydroxyacylglutathione hydrolase cytoplasmic 216 29.14 0 220837..221241 + 134 71082925 rplU SAR11_0220 - 50S ribosomal protein L21 217 38.04 +2 221254..221508 + 84 71082926 rpmA SAR11_0221 - 50S ribosomal protein L27 218 33.03 0 221539..222522 + 327 71082927 obgE SAR11_0222 - GTPase ObgE 219 29.54 0 222512..223618 + 368 71082928 proB SAR11_0223 - glutamate 5-kinase 220 29.74 0 223620..224870 + 416 71082929 proA SAR11_0224 - gamma-glutamyl phosphate reductase 221 23.57 -1 224851..225393 + 180 71082930 ybeN SAR11_0225 - nicotinate-nucleotide adenylyltransferase 222 27.35 0 225411..225761 + 116 71082931 ybeB SAR11_0226 - iojap-related protein 223 30.61 0 225758..226897 + 379 71082932 ctpA SAR11_0227 - tail-specific proteinase 224 29.77 0 226898..227374 + 158 71082933 nudH SAR11_0228 - (di)nucleoside polyphosphate hydrolase 225 27.23 0 227367..227759 - 130 71082934 atpC SAR11_0229 - ATP synthase epsilon chain (ATP synthase F1 sector epsilon subunit) 226 37.35 +1 227759..229177 - 472 71082935 atpD SAR11_0230 - F0F1 ATP synthase subunit beta 227 30.82 0 229180..230055 - 291 71082936 atpG SAR11_0231 - F0F1 ATP synthase subunit gamma 228 34.77 +1 230059..231594 - 511 71082937 atpA SAR11_0232 - F0F1 ATP synthase subunit alpha 229 28.14 0 231595..232152 - 185 71082938 atpH SAR11_0233 - H+-transporting two-sector ATPase (F0F1-type ATP synthase) delta chain 230 28.17 0 232263..234218 - 651 71082939 priA SAR11_0234 - primosomal protein N 231 32.41 0 234241..235641 - 466 71082940 pdhD SAR11_0235 - dihydrolipoyl dehydrogenase 232 31.38 0 235642..236919 - 425 71082941 sucB SAR11_0236 - 2-oxoglutarate dehydrogenase complex E2 component 233 31.03 0 236922..239825 - 967 71082942 kgd SAR11_0237 - alpha-ketoglutarate decarboxylase 234 34.82 +1 239860..240735 - 291 71082943 sucD SAR11_0238 - succinyl-CoA synthetase alpha chain (SCS-alpha) 235 31.96 0 240737..241897 - 386 71082944 sucC SAR11_0239 - succinyl-CoA synthetase beta chain (SCS-beta) 236 33.23 0 241897..242859 - 320 71082945 mdh SAR11_0240 - malate dehydrogenase 237 34.94 +1 242868..244361 - 497 71082946 mmsA SAR11_0241 - methylmalonate-semialdehyde dehydrogenase [acylating] (MMSDH) 238 31.65 0 244386..245159 - 257 71082947 sdhB SAR11_0242 - succinate dehydrogenase iron-sulfur subunit 239 36.10 +1 245159..246931 - 590 71082948 sdhA SAR11_0243 - succinate dehydrogenase flavoprotein subunit 240 23.85 -1 246931..247257 - 108 71082949 - SAR11_0244 - membrane portion of succinate dehydrogenase 241 26.04 0 247259..247642 - 127 71082950 sdhC SAR11_1721 - succinate dehydrogenase cytochrome b 242 30.04 0 247635..248636 - 333 71082951 asd SAR11_0245 - aspartate-semialdehyde dehydrogenase 243 31.53 0 248657..249766 - 369 71082952 dmdA SAR11_0246 - putative dimethyl sulfoniopropionate demethylase 244 28.44 0 249763..250539 - 258 71082953 mhpC SAR11_0247 - hydrolase 245 32.04 0 250536..252164 - 542 71082954 fadD SAR11_0248 - Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II 246 31.69 0 252166..253929 - 587 71082955 mmgC SAR11_0249 - acyl-CoA dehydrogenase 247 32.88 0 253956..255062 - 368 71082956 leuB SAR11_0250 - 3-isopropylmalate dehydrogenase 248 26.31 0 255049..255660 - 203 71082957 leuD SAR11_0251 - 3-isopropylmalate dehydratase 249 35.75 +1 255662..257065 - 467 71082958 leuC SAR11_0252 - isopropylmalate isomerase large subunit 250 29.49 0 257077..257571 - 164 71082959 rplS SAR11_0253 - 50S ribosomal protein L19 251 34.21 +1 257588..258274 - 228 71082960 trmD SAR11_0254 - tRNA (guanine-N(1)-)-methyltransferase 252 41.39 +2 258283..258816 - 177 71082961 rpsP SAR11_0255 - 30S ribosomal protein S16 253 33.77 +1 258831..260189 - 452 71082962 ffh SAR11_0256 - signal recognition particle protein 254 30.30 0 260349..261173 + 274 71082963 dapF SAR11_0257 - diaminopimelate epimerase (DAP epimerase) 255 30.83 0 261173..262090 + 305 71082964 ftsY SAR11_0258 - cell division particle 256 23.58 -1 262083..262646 - 187 71082965 - SAR11_0259 - hypothetical protein 257 29.53 0 262705..263598 - 297 71082966 - SAR11_0260 - transporter 258 32.78 0 263611..263790 - 59 71082967 - SAR11_0262 - transmembrane protein 259 32.81 0 263780..265117 - 445 71082968 - SAR11_0263 - amidase 260 33.99 +1 265128..266489 - 453 71082969 - SAR11_0264 - mannitol transporter 261 34.36 +1 266479..267063 - 194 71082970 - SAR11_0265 - mannitol transporter 262 39.46 +2 267155..268312 - 385 71082971 - SAR11_0266 - TRAP dicarboxylate transporter - DctP subunit (mannitol/chloroaromatic compounds) 263 29.98 0 268433..269506 - 357 71082972 msmX SAR11_0267 - ABC sugar transporter 264 29.81 0 269499..270578 - 359 71082973 msmX2 SAR11_0268 - ABC sugar transporter 265 31.45 0 270578..271426 - 282 71082974 ycjP SAR11_0269 - putative ABC transport protein 266 32.06 0 271429..272289 - 286 71082975 - SAR11_0270 - binding-protein dependent transport system inner membrane protein 267 36.78 +1 272358..273893 - 511 71082976 - SAR11_0271 - putative ABC transporter solute-binding protein 268 37.76 +2 273915..274772 - 285 71082977 adhP SAR11_0272 - alcohol dehydrogenase (Zn containing) (adh-5) 269 30.84 0 275137..276219 + 360 71082978 stc SAR11_0273 - transcriptional regulator 270 30.13 0 276222..277439 - 405 71082979 - SAR11_0274 - major facilitator superfamily transporter 271 32.60 0 277460..278413 - 317 71082980 - SAR11_0275 - dehydrogenase 272 29.55 0 278416..279711 - 431 71082981 glcF SAR11_0276 - (S)-2-hydroxy-acid oxidase 273 29.39 0 279711..280979 - 422 71082982 glcE SAR11_0277 - (S)-2-hydroxy-acid oxidase 274 33.73 +1 280945..282441 - 498 71082983 glcD SAR11_0278 - (S)-2-hydroxy-acid oxidase 275 34.11 +1 282447..283610 - 387 71082984 aspC SAR11_0279 - aspartate transaminase 276 33.77 +1 283684..284835 - 383 71082985 ildD SAR11_0280 - l-lactate dehydrogenase 277 28.43 0 284844..285353 - 169 71082986 - SAR11_0281 - hypothetical protein 278 22.83 -1 285354..285734 - 126 71082987 - SAR11_0282 - hypothetical protein 279 25.10 -1 285731..286252 - 173 71082988 ccmG SAR11_0283 - cytochrome C biogenesis protein ccmG 280 26.46 0 286249..288126 - 625 71082989 ccmF SAR11_0284 - cytochrome c-type biogenesis protein 29.30 MEAN 4.13 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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