IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
156	 23.64	-1	162399..163316	-	305	71082865	ribF	SAR11_0159	-	riboflavin biosynthesis protein
157	 27.11	0	163320..164138	-	272	71082866	-	SAR11_0160	-	haloacid dehalogenase-like hydrolase
158	 35.40	+1	164262..164552	+	96	71082867	groES	SAR11_0161	-	10 kDa chaperonin
159	 37.42	+1	164576..166240	+	554	71082868	groEL	SAR11_0162	-	60 kDa chaperonin
160	 23.68	-1	166322..166435	+	37	71082869	-	SAR11_0163	-	hypothetical protein
161	 33.10	0	166432..168180	-	582	71082870	rlhE	SAR11_0164	-	ATP-dependent RNA helicase
162	 33.61	+1	168376..170202	+	608	71082871	typA	SAR11_0165	-	GTP-binding protein
163	 32.25	0	170199..170846	-	215	71082872	-	SAR11_0166	-	membrane protein
164	 24.67	-1	170900..171580	+	226	71082873	-	SAR11_0167	-	hypothetical protein
165	 25.93	0	171583..172554	-	323	71082874	-	SAR11_0168	-	amine oxidase
166	 28.94	0	172551..173870	-	439	71082875	pmbA	SAR11_0169	-	protein for maturation of antibiotic MccB17
167	 32.77	0	173876..175288	-	470	71082876	tldD	SAR11_0170	-	protein that suppresses inhibitory activity of CsrA
168	 30.03	0	175399..175761	+	120	71082877	-	SAR11_0171	-	rhodanese-related sulfurtransferase
169	 23.28	-1	175765..176112	+	115	71082878	-	SAR11_0172	-	hypothetical protein
170	 28.18	0	176158..176700	+	180	71082879	-	SAR11_0173	-	2-hydroxy-6-oxo-2,4-heptadienoate hydrolase
171	 26.11	0	176702..177877	-	391	71082880	-	SAR11_0174	-	hypothetical protein
172	 29.94	0	177954..178838	-	294	71082881	-	SAR11_0175	-	dapA-like protein
173	 22.33	-1	178883..179818	+	311	71082882	gmdA	SAR11_0176	-	GDP-mannose 4,6-dehydratase
174	 26.09	0	179815..180753	+	312	71082883	-	SAR11_0177	-	heptosyltransferase
175	 24.26	-1	180750..181256	-	168	71082884	-	SAR11_0178	-	heat shock protein
176	 29.72	0	181274..183349	+	691	71082885	ptrB	SAR11_0180	-	oligopeptidase B
177	 31.10	0	183448..183894	+	148	71082886	ibpA	SAR11_0181	-	heat shock protein a
178	 27.78	0	183941..184246	-	101	71082887	-	SAR11_0182	-	hypothetical protein
179	 35.32	+1	184378..185688	+	436	71082888	-	SAR11_0183	-	xanthine/uracil/vitamin C permease family protein
180	 28.68	0	185722..186258	-	178	71082889	-	SAR11_0184	-	phosphoribosyltransferase
181	 35.02	+1	186287..186583	+	98	71082890	-	SAR11_0185	-	hypothetical protein
182	 28.80	0	186570..187142	-	190	71082891	tag	SAR11_0186	-	DNA-3-methyladenine glycosylase I
183	 30.96	0	187198..188082	-	294	71082892	-	SAR11_0187	-	DMT family permease
184	 29.50	0	188118..188561	+	147	71082893	msrB	SAR11_0188	-	peptide methionine sulfoxide reductase
185	 28.04	0	188563..189375	+	270	71082894	sseA	SAR11_0189	-	thiosulfate sulfurtransferase
186	 27.13	0	189379..190248	+	289	71082895	yhil	SAR11_0190	-	HlyD family-like protein
187	 31.25	0	190248..193370	+	1040	71082896	-	SAR11_0191	-	AcrB/AcrD/AcrF family protein (acriflavin resistance)
188	 28.33	0	193367..193966	-	199	71082897	-	SAR11_0192	-	soluble lytic murein transglycosylase
189	 23.33	-1	193953..194342	-	129	71082898	-	SAR11_1720	-	unknown membrane protein
190	 29.85	0	194401..195117	+	238	71082899	gpmA	SAR11_0193	-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
191	 21.88	-1	195106..195795	-	229	71082900	-	SAR11_0194	-	nucleotidyltransferase family protein
192	 23.50	-1	195792..196757	-	321	71082901	-	SAR11_0195	-	phosphotransferase enzyme family protein
193	 27.67	0	196761..197219	-	152	71082902	-	SAR11_0196	-	cell division control protein 6
194	 34.50	+1	197203..198489	-	428	71082903	ahcY	SAR11_0197	-	S-adenosyl-L-homocysteine hydrolase
195	 24.63	-1	198533..200071	-	512	71082904	chvG	SAR11_0198	-	two-component sensor histidine kinase
196	 29.66	0	200071..200778	-	235	71082905	chvI	SAR11_0199	-	two-component system response regulator
197	 29.48	0	200829..203603	-	924	71082906	polA	SAR11_0200	-	DNA polymerase I
198	 29.57	0	203654..204583	+	309	71082907	-	SAR11_0201	-	YadG-like ABC transporter protein
199	 27.36	0	204616..205167	+	183	71082908	-	SAR11_0202	-	biotin synthase
200	 35.28	+1	205160..205723	-	187	71082909	-	SAR11_0203	-	response regulator
201	 30.03	0	205872..207050	+	392	71082910	speC	SAR11_0204	-	lysine/ornithine decarboxylase
202	 30.94	0	207050..208093	+	347	71082911	dys2	SAR11_0205	-	deoxyhypusine synthase-like protein
203	 28.65	0	208096..208971	+	291	71082912	speB1	SAR11_0206	-	arginase
204	 29.37	0	208968..209522	-	184	71082913	yhhQ	SAR11_0207	-	hypothetical protein
205	 26.23	0	209522..209845	-	107	71082914	rpmB	SAR11_0208	-	50S ribosomal protein L28
206	 30.20	0	209899..210951	-	350	71082915	pyrD	SAR11_0209	-	dihydroorotate dehydrogenase
207	 29.78	0	210951..212528	-	525	71082916	lysK	SAR11_0210	-	lysyl-tRNA synthetase
208	 27.87	0	212604..214049	+	481	71082917	trkH	SAR11_0211	-	potassium uptake protein
209	 33.41	0	214052..215428	+	458	71082918	ampG	SAR11_0213	-	muropeptide permease
210	 21.15	-1	215418..216164	+	248	71082919	-	SAR11_0214	-	hypothetical protein
211	 23.75	-1	216161..217057	-	298	71082920	tyrA	SAR11_0215	-	prephenate dehydrogenase
212	 26.96	0	217060..218142	-	360	71082921	hisC	SAR11_0216	-	histidinol-phosphate aminotransferase
213	 31.19	0	218334..219452	+	372	71082922	metX	SAR11_0217	-	homoserine O-acetyltransferase
214	 26.13	0	219455..220051	+	198	71082923	metW	SAR11_0218	-	methionine biosynthesis protein
215	 29.17	0	220052..220771	+	239	71082924	gloB	SAR11_0219	-	hydroxyacylglutathione hydrolase cytoplasmic
216	 29.14	0	220837..221241	+	134	71082925	rplU	SAR11_0220	-	50S ribosomal protein L21
217	 38.04	+2	221254..221508	+	84	71082926	rpmA	SAR11_0221	-	50S ribosomal protein L27
218	 33.03	0	221539..222522	+	327	71082927	obgE	SAR11_0222	-	GTPase ObgE
219	 29.54	0	222512..223618	+	368	71082928	proB	SAR11_0223	-	glutamate 5-kinase
220	 29.74	0	223620..224870	+	416	71082929	proA	SAR11_0224	-	gamma-glutamyl phosphate reductase
221	 23.57	-1	224851..225393	+	180	71082930	ybeN	SAR11_0225	-	nicotinate-nucleotide adenylyltransferase
222	 27.35	0	225411..225761	+	116	71082931	ybeB	SAR11_0226	-	iojap-related protein
223	 30.61	0	225758..226897	+	379	71082932	ctpA	SAR11_0227	-	tail-specific proteinase
224	 29.77	0	226898..227374	+	158	71082933	nudH	SAR11_0228	-	(di)nucleoside polyphosphate hydrolase
225	 27.23	0	227367..227759	-	130	71082934	atpC	SAR11_0229	-	ATP synthase epsilon chain (ATP synthase F1 sector epsilon subunit)
226	 37.35	+1	227759..229177	-	472	71082935	atpD	SAR11_0230	-	F0F1 ATP synthase subunit beta
227	 30.82	0	229180..230055	-	291	71082936	atpG	SAR11_0231	-	F0F1 ATP synthase subunit gamma
228	 34.77	+1	230059..231594	-	511	71082937	atpA	SAR11_0232	-	F0F1 ATP synthase subunit alpha
229	 28.14	0	231595..232152	-	185	71082938	atpH	SAR11_0233	-	H+-transporting two-sector ATPase (F0F1-type ATP synthase) delta chain
230	 28.17	0	232263..234218	-	651	71082939	priA	SAR11_0234	-	primosomal protein N
231	 32.41	0	234241..235641	-	466	71082940	pdhD	SAR11_0235	-	dihydrolipoyl dehydrogenase
232	 31.38	0	235642..236919	-	425	71082941	sucB	SAR11_0236	-	2-oxoglutarate dehydrogenase complex E2 component
233	 31.03	0	236922..239825	-	967	71082942	kgd	SAR11_0237	-	alpha-ketoglutarate decarboxylase
234	 34.82	+1	239860..240735	-	291	71082943	sucD	SAR11_0238	-	succinyl-CoA synthetase alpha chain (SCS-alpha)
235	 31.96	0	240737..241897	-	386	71082944	sucC	SAR11_0239	-	succinyl-CoA synthetase beta chain (SCS-beta)
236	 33.23	0	241897..242859	-	320	71082945	mdh	SAR11_0240	-	malate dehydrogenase
237	 34.94	+1	242868..244361	-	497	71082946	mmsA	SAR11_0241	-	methylmalonate-semialdehyde dehydrogenase [acylating] (MMSDH)
238	 31.65	0	244386..245159	-	257	71082947	sdhB	SAR11_0242	-	succinate dehydrogenase iron-sulfur subunit
239	 36.10	+1	245159..246931	-	590	71082948	sdhA	SAR11_0243	-	succinate dehydrogenase flavoprotein subunit
240	 23.85	-1	246931..247257	-	108	71082949	-	SAR11_0244	-	membrane portion of succinate dehydrogenase
241	 26.04	0	247259..247642	-	127	71082950	sdhC	SAR11_1721	-	succinate dehydrogenase cytochrome b
242	 30.04	0	247635..248636	-	333	71082951	asd	SAR11_0245	-	aspartate-semialdehyde dehydrogenase
243	 31.53	0	248657..249766	-	369	71082952	dmdA	SAR11_0246	-	putative dimethyl sulfoniopropionate demethylase
244	 28.44	0	249763..250539	-	258	71082953	mhpC	SAR11_0247	-	hydrolase
245	 32.04	0	250536..252164	-	542	71082954	fadD	SAR11_0248	-	Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
246	 31.69	0	252166..253929	-	587	71082955	mmgC	SAR11_0249	-	acyl-CoA dehydrogenase
247	 32.88	0	253956..255062	-	368	71082956	leuB	SAR11_0250	-	3-isopropylmalate dehydrogenase
248	 26.31	0	255049..255660	-	203	71082957	leuD	SAR11_0251	-	3-isopropylmalate dehydratase
249	 35.75	+1	255662..257065	-	467	71082958	leuC	SAR11_0252	-	isopropylmalate isomerase large subunit
250	 29.49	0	257077..257571	-	164	71082959	rplS	SAR11_0253	-	50S ribosomal protein L19
251	 34.21	+1	257588..258274	-	228	71082960	trmD	SAR11_0254	-	tRNA (guanine-N(1)-)-methyltransferase
252	 41.39	+2	258283..258816	-	177	71082961	rpsP	SAR11_0255	-	30S ribosomal protein S16
253	 33.77	+1	258831..260189	-	452	71082962	ffh	SAR11_0256	-	signal recognition particle protein
254	 30.30	0	260349..261173	+	274	71082963	dapF	SAR11_0257	-	diaminopimelate epimerase (DAP epimerase)
255	 30.83	0	261173..262090	+	305	71082964	ftsY	SAR11_0258	-	cell division particle
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.