IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
100	 28.35	0	113110..113571	+	153	71082809	spoU	SAR11_0101	-	rRNA methylase
101	 29.35	0	113571..114398	+	275	71082810	hemF	SAR11_0102	-	coproporphyrinogen III oxidase
102	 30.61	0	114400..114876	+	158	71082811	greA	SAR11_0103	-	transcription elongation factor
103	 25.33	0	114873..116147	-	424	71082812	pcnB	SAR11_0104	-	Poly(A) polymerase (PAP)
104	 25.53	0	116257..117102	-	281	71082813	ispE	SAR11_0105	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
105	 24.67	-1	117106..118791	-	561	71082814	-	SAR11_0106	-	TPR repeat-containing protein
106	 26.78	0	118803..119534	+	243	71082815	-	SAR11_0107	-	DNA-directed DNA polymerase
107	 28.16	0	119534..120094	+	186	71082816	rnhB	SAR11_0108	-	ribonuclease HII (RNase HII)
108	 30.44	0	120216..121286	+	356	71082817	babIM	SAR11_0109	-	site-specific DNA methyltransferase
109	 26.56	0	121283..122434	-	383	71082818	nah	SAR11_0110	-	salicylate 1-monooxygenase
110	 25.18	0	122434..123414	-	326	71082819	mutY	SAR11_0111	-	A/G-specific adenine glycosylase
111	 25.97	0	123415..123903	+	162	71082820	-	SAR11_0112	-	hypothetical protein
112	 27.71	0	123975..124490	+	171	71082821	-	SAR11_0113	-	DsbA-like protein
113	 30.19	0	124499..127072	+	857	71082822	smc	SAR11_0114	-	SMC family chromosome segregation protein
114	 32.97	0	127081..127356	+	91	71082823	-	SAR11_0115	-	transmembrane protein
115	 33.06	0	127369..128103	+	244	71082824	atpB	SAR11_0116	-	F0F1 ATP synthase subunit A
116	 39.47	+2	128123..128350	+	75	71082825	atpE	SAR11_0117	-	F0F1 ATP synthase subunit C
117	 30.93	0	128407..128946	+	179	71082826	-	SAR11_0118	-	H+-transporting two-sector ATPase (subunit b')
118	 25.10	-1	128936..129433	+	165	71082827	atpF	SAR11_0119	-	H+-transporting two-sector ATPase (subunit b)
119	 30.18	0	129473..130930	+	485	71082828	crtI	SAR11_0120	-	phytoene dehydrogenase
120	 24.06	-1	130930..131781	+	283	71082829	crtB	SAR11_0121	-	phytoene synthase
121	 25.58	0	131813..132844	+	343	71082830	crtY	SAR11_0122	-	lycopene cyclase
122	 21.94	-1	132834..133772	+	312	71082831	-	SAR11_0123	-	transmembrane protein
123	 31.64	0	133762..134706	+	314	71082832	lytB	SAR11_0124	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
124	 22.39	-1	134707..135675	+	322	71082833	thrB	SAR11_0125	-	homoserine kinase
125	 31.22	0	135675..136100	+	141	71082834	rnhA	SAR11_0126	-	ribonuclease H (RNase H)
126	 30.25	0	136092..136577	-	161	71082835	pmpA	SAR11_0127	-	peroxisomal membrane protein a (pmp20)
127	 27.10	0	136574..137953	-	459	71082836	thrC	SAR11_0128	-	threonine synthase
128	 23.85	-1	137954..138607	-	217	71082837	surf1	SAR11_0129	-	surfeit locus protein 1
129	 35.23	+1	138618..139406	-	262	71082838	coxC	SAR11_0130	-	cytochrome-c oxidase
130	 30.35	0	139409..139945	-	178	71082839	ctaG	SAR11_0131	-	cytochrome C oxidase assembly protein
131	 25.40	0	139945..140070	-	41	71082840	-	SAR11_0132	-	serine protease inhibitor sgti
132	 30.80	0	140067..140933	-	288	71082841	ctaB	SAR11_0133	-	cytochrome c oxidase assembly factor
133	 35.66	+1	141011..142645	-	544	71082842	cox1	SAR11_0134	-	cytochrome-c oxidase
134	 32.97	0	142648..143463	-	271	71082843	coxB	SAR11_0135	-	cytochrome c oxidase polypeptide II (cytochrome aa3 subunit 2)
135	 26.35	0	143525..144226	-	233	71082844	-	SAR11_0136	-	hypothetical protein
136	 27.75	0	144244..144906	+	220	71082845	dhlB	SAR11_0137	-	(S)-2-haloacid dehalogenase
137	 30.00	0	144899..145258	-	119	71082846	-	SAR11_0138	-	transcriptional regulator
138	 37.55	+1	145353..145589	+	78	71082847	-	SAR11_0139	-	putative glutamate synthetas
139	 29.13	0	145619..145999	+	126	71082848	-	SAR11_0140	-	DoxD-like family protein
140	 34.83	+1	146096..147634	+	512	71082849	-	SAR11_0141	-	ferredoxin-dependent glutamate synthase peptide
141	 33.93	+1	147644..148483	+	279	71082850	-	SAR11_0142	-	pirin
142	 33.23	0	148483..149457	+	324	71082851	qor	SAR11_0143	-	quinone oxidoreductase
143	 29.88	0	149454..149858	-	134	71082852	-	SAR11_0144	-	hypothetical protein
144	 26.97	0	149911..150774	+	287	71082853	ubiA	SAR11_0145	-	4-hydroxybenzoate octaprenyltransferase
145	 28.05	0	150774..152513	+	579	71082854	-	SAR11_0147	-	ABC transporter ATP-binding protein
146	 23.91	-1	152513..153775	+	420	71082855	kdtA	SAR11_0148	-	3-deoxy-D-manno-octulosonic-acid transferase
147	 24.55	-1	153756..154700	+	314	71082856	lpxK	SAR11_0149	-	tetraacyldisaccharide 4'-kinase
148	 24.39	-1	154687..155547	+	286	71082857	htrB	SAR11_0151	-	lipid A biosynthesis lauroyl acyltransferase
149	 24.87	-1	155552..155740	-	62	71082858	-	SAR11_0152	-	hypothetical protein
150	 29.15	0	155762..157027	+	421	71082859	purD	SAR11_0153	-	phosphoribosylamine--glycine ligase
151	 23.81	-1	157024..157590	+	188	71082860	-	SAR11_0154	-	N6-adenine-specific methylase
152	 22.48	-1	157582..158724	-	380	71082861	pgi	SAR11_0155	-	glucose-6-phosphate isomerase
153	 26.25	0	158728..159066	-	112	71082862	-	SAR11_0156	-	hypothetical protein
154	 24.35	-1	159167..159667	-	166	71082863	lspA	SAR11_0157	-	lipoprotein signal peptidase
155	 30.65	0	159680..162397	-	905	71082864	ileS	SAR11_0158	-	isoleucyl-tRNA synthetase
156	 23.64	-1	162399..163316	-	305	71082865	ribF	SAR11_0159	-	riboflavin biosynthesis protein
157	 27.11	0	163320..164138	-	272	71082866	-	SAR11_0160	-	haloacid dehalogenase-like hydrolase
158	 35.40	+1	164262..164552	+	96	71082867	groES	SAR11_0161	-	10 kDa chaperonin
159	 37.42	+1	164576..166240	+	554	71082868	groEL	SAR11_0162	-	60 kDa chaperonin
160	 23.68	-1	166322..166435	+	37	71082869	-	SAR11_0163	-	hypothetical protein
161	 33.10	0	166432..168180	-	582	71082870	rlhE	SAR11_0164	-	ATP-dependent RNA helicase
162	 33.61	+1	168376..170202	+	608	71082871	typA	SAR11_0165	-	GTP-binding protein
163	 32.25	0	170199..170846	-	215	71082872	-	SAR11_0166	-	membrane protein
164	 24.67	-1	170900..171580	+	226	71082873	-	SAR11_0167	-	hypothetical protein
165	 25.93	0	171583..172554	-	323	71082874	-	SAR11_0168	-	amine oxidase
166	 28.94	0	172551..173870	-	439	71082875	pmbA	SAR11_0169	-	protein for maturation of antibiotic MccB17
167	 32.77	0	173876..175288	-	470	71082876	tldD	SAR11_0170	-	protein that suppresses inhibitory activity of CsrA
168	 30.03	0	175399..175761	+	120	71082877	-	SAR11_0171	-	rhodanese-related sulfurtransferase
169	 23.28	-1	175765..176112	+	115	71082878	-	SAR11_0172	-	hypothetical protein
170	 28.18	0	176158..176700	+	180	71082879	-	SAR11_0173	-	2-hydroxy-6-oxo-2,4-heptadienoate hydrolase
171	 26.11	0	176702..177877	-	391	71082880	-	SAR11_0174	-	hypothetical protein
172	 29.94	0	177954..178838	-	294	71082881	-	SAR11_0175	-	dapA-like protein
173	 22.33	-1	178883..179818	+	311	71082882	gmdA	SAR11_0176	-	GDP-mannose 4,6-dehydratase
174	 26.09	0	179815..180753	+	312	71082883	-	SAR11_0177	-	heptosyltransferase
175	 24.26	-1	180750..181256	-	168	71082884	-	SAR11_0178	-	heat shock protein
176	 29.72	0	181274..183349	+	691	71082885	ptrB	SAR11_0180	-	oligopeptidase B
177	 31.10	0	183448..183894	+	148	71082886	ibpA	SAR11_0181	-	heat shock protein a
178	 27.78	0	183941..184246	-	101	71082887	-	SAR11_0182	-	hypothetical protein
179	 35.32	+1	184378..185688	+	436	71082888	-	SAR11_0183	-	xanthine/uracil/vitamin C permease family protein
180	 28.68	0	185722..186258	-	178	71082889	-	SAR11_0184	-	phosphoribosyltransferase
181	 35.02	+1	186287..186583	+	98	71082890	-	SAR11_0185	-	hypothetical protein
182	 28.80	0	186570..187142	-	190	71082891	tag	SAR11_0186	-	DNA-3-methyladenine glycosylase I
183	 30.96	0	187198..188082	-	294	71082892	-	SAR11_0187	-	DMT family permease
184	 29.50	0	188118..188561	+	147	71082893	msrB	SAR11_0188	-	peptide methionine sulfoxide reductase
185	 28.04	0	188563..189375	+	270	71082894	sseA	SAR11_0189	-	thiosulfate sulfurtransferase
186	 27.13	0	189379..190248	+	289	71082895	yhil	SAR11_0190	-	HlyD family-like protein
187	 31.25	0	190248..193370	+	1040	71082896	-	SAR11_0191	-	AcrB/AcrD/AcrF family protein (acriflavin resistance)
188	 28.33	0	193367..193966	-	199	71082897	-	SAR11_0192	-	soluble lytic murein transglycosylase
189	 23.33	-1	193953..194342	-	129	71082898	-	SAR11_1720	-	unknown membrane protein
190	 29.85	0	194401..195117	+	238	71082899	gpmA	SAR11_0193	-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
191	 21.88	-1	195106..195795	-	229	71082900	-	SAR11_0194	-	nucleotidyltransferase family protein
192	 23.50	-1	195792..196757	-	321	71082901	-	SAR11_0195	-	phosphotransferase enzyme family protein
193	 27.67	0	196761..197219	-	152	71082902	-	SAR11_0196	-	cell division control protein 6
194	 34.50	+1	197203..198489	-	428	71082903	ahcY	SAR11_0197	-	S-adenosyl-L-homocysteine hydrolase
195	 24.63	-1	198533..200071	-	512	71082904	chvG	SAR11_0198	-	two-component sensor histidine kinase
196	 29.66	0	200071..200778	-	235	71082905	chvI	SAR11_0199	-	two-component system response regulator
197	 29.48	0	200829..203603	-	924	71082906	polA	SAR11_0200	-	DNA polymerase I
198	 29.57	0	203654..204583	+	309	71082907	-	SAR11_0201	-	YadG-like ABC transporter protein
199	 27.36	0	204616..205167	+	183	71082908	-	SAR11_0202	-	biotin synthase
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.