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Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759 1354 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1256 32.62 0 1210949..1211227 + 92 71083964 - SAR11_1276 - hypothetical protein 1257 27.18 0 1211265..1212011 + 248 71083965 racX SAR11_1277 - aspartate racemase 1258 28.57 0 1212015..1212455 + 146 71083966 - SAR11_1278 - hypothetical protein 1259 28.53 0 1212445..1212756 - 103 71083967 - SAR11_1279 - unknown membrane protein 1260 30.05 0 1212866..1213717 + 283 71083968 - SAR11_1280 - hypothetical protein 1261 25.17 -1 1213722..1214309 - 195 71083969 soxG2 SAR11_1281 - sarcosine oxidase 1262 32.47 0 1214306..1217302 - 998 71083970 soxA2 SAR11_1282 - sarcosine oxidase alpha chain 1263 32.96 0 1217304..1217570 - 88 71083971 soxD2 SAR11_1283 - sarcosine oxidase delta chain 1264 36.20 +1 1217571..1218827 - 418 71083972 soxB2 SAR11_1284 - sarcosine oxidase beta subunit 1265 33.33 0 1218954..1220639 + 561 71083973 fhs SAR11_1285 - formate-tetrahydrofolate ligase 1266 29.92 0 1220643..1221434 - 263 71083974 - SAR11_1286 - glutamine amidotransferase 1267 33.08 0 1221431..1222597 - 388 71083975 - SAR11_1287 - iron-containing alcohol dehydrogenase 1268 30.43 0 1222669..1224045 + 458 71083976 ssdH SAR11_1288 - aldehyde dehydrogenase 1269 27.91 0 1224047..1224802 + 251 71083977 - SAR11_1289 - short chain dehydrogenase 1270 38.16 +2 1224850..1225926 - 358 71083978 - SAR11_1290 - TRAP-type extracellular solute-binding protein 1271 34.46 +1 1226064..1227395 - 443 71083979 dctM SAR11_1292 - TrapT family protein 1272 28.63 0 1227395..1227904 - 169 71083980 dctQ SAR11_1293 - tripartite ATP-independent periplasmic 1273 25.13 -1 1227911..1228105 - 64 71083981 - SAR11_1294 - hypothetical protein 1274 30.42 0 1228099..1229127 - 342 71083982 gpsA SAR11_1295 - glycerol-3-phosphate dehydrogenase (NAD) 1275 31.91 0 1229207..1230538 + 443 71083983 - SAR11_1296 - putative flavin-containing monooxygenase 1276 32.96 0 1230571..1232724 - 717 71083984 opuAB SAR11_1297 - glycine betaine/L-proline transport system permease 1277 32.07 0 1232734..1233759 - 341 71083985 opuAA SAR11_1298 - glycine betaine/l-proline transport ATP-binding protein 1278 26.96 0 1233832..1234380 - 182 71083986 - SAR11_1299 - unknown membrane protein 1279 36.51 +1 1234392..1234769 - 125 71083987 - SAR11_1300 - MORN repeat-containing protein 1280 22.29 -1 1234804..1235283 - 159 71083988 - SAR11_1301 - unknown membrane protein 1281 39.15 +2 1235374..1236318 - 314 71083989 opuAC SAR11_1302 - substrate-binding region of ABC-type glycine betaine transport system 1282 32.52 0 1236434..1238761 + 775 71083990 - SAR11_1303 - putative aminomethyltransferase protein 1283 30.48 0 1238765..1239115 + 116 71083991 rpl6e SAR11_1732 - ribosomal protein L6e 1284 35.21 +1 1239215..1240543 + 442 71083992 - SAR11_1304 - putative monomeric sarcosine oxidase 1285 35.58 +1 1240616..1242085 + 489 71083993 - SAR11_1305 - GlnT-like protein 1286 34.18 +1 1242110..1243054 + 314 71083994 - SAR11_1306 - glutamine amidotransferase-like protein 1287 34.27 +1 1243042..1243896 + 284 71083995 - SAR11_1307 - GXGXG motif-containing protein 1288 36.70 +1 1243896..1245320 + 474 71083996 - SAR11_1308 - glutamate synthase large subunit-like protein 1289 31.34 0 1245330..1245731 + 133 71083997 - SAR11_1309 - hypothetical protein 1290 39.40 +2 1245857..1247257 + 466 71083998 amt SAR11_1310 - ammonium transporter 1291 39.56 +2 1247269..1247493 + 74 71083999 - SAR11_1311 - unknown membrane protein 1292 29.41 0 1247554..1247706 + 50 71084000 - SAR11_1312 - unknown membrane protein 1293 31.63 0 1247719..1248597 + 292 71084001 glxB SAR11_1313 - glutamine amidotransferase-like protein glxB 1294 31.28 0 1248601..1249281 + 226 71084002 glxC SAR11_1314 - GlxC protein 1295 36.45 +1 1249284..1250600 + 438 71084003 glxD SAR11_1315 - glutamate synthase large subunit 1296 31.67 0 1250644..1251969 + 441 71084004 glnT SAR11_1316 - glutamine synthetase III 1297 30.53 0 1251973..1253115 + 380 71084005 ygeX SAR11_1317 - diaminopropionate ammonia-lyase 1298 29.47 0 1253122..1254543 + 473 71084006 phrB SAR11_1318 - deoxyribodipyrimidine photo-lyase 1299 31.19 0 1254540..1254959 - 139 71084007 - SAR11_1319 - hypothetical protein 1300 21.02 -2 1254956..1255816 - 286 71084008 - SAR11_1320 - AFG1-like ATPase 1301 32.19 0 1256001..1256438 - 145 71084009 - SAR11_1321 - hypothetical protein 1302 24.50 -1 1256441..1257742 - 433 71084010 - SAR11_1322 - PQQ repeat-containing protein 1303 22.48 -1 1257732..1258376 - 214 71084011 - SAR11_1323 - unknown membrane protein 1304 32.73 0 1258379..1261048 - 889 71084012 acnA SAR11_1324 - aconitate hydratase 1305 27.21 0 1261054..1261641 - 195 71084013 yfiK SAR11_1325 - transporter 1306 30.12 0 1261647..1261988 - 113 71084014 csaA SAR11_1326 - CsaA protein 1307 31.65 0 1262016..1263206 + 396 71084015 argE SAR11_1327 - acetylornithine deacetylase 1308 34.66 +1 1263228..1264664 - 478 71084016 - SAR11_1328 - aldehyde dehydrogenase 1309 35.92 +1 1264679..1265644 - 321 71084017 speB SAR11_1329 - agmatinase 1310 23.04 -1 1265702..1266439 + 245 71084018 - SAR11_1330 - putative lipoprotein 1311 26.67 0 1266439..1267083 + 214 71084019 ppiA SAR11_1331 - peptidylprolyl cis-trans isomerase precursor 1312 22.33 -1 1267165..1268373 + 402 71084020 - SAR11_1332 - hypothetical protein 1313 29.91 0 1268370..1270592 - 740 71084021 fadB SAR11_1333 - 3-hydroxyacyl-CoA dehydrogenase 1314 34.50 +1 1270649..1271503 - 284 71084022 potC SAR11_1334 - spermidine/putrescine transport system permease protein potc 1315 31.97 0 1271507..1272754 - 415 71084023 potB SAR11_1335 - spermidine/putrescine transport system permease protein potb 1316 38.95 +2 1272839..1273960 - 373 71084024 potD SAR11_1336 - spermidine/putrescine-binding periplasmic protein 1317 32.78 0 1274095..1275183 - 362 71084025 potA SAR11_1337 - spermidine/putrescine transport ATP-binding protein pota 1318 33.76 +1 1275242..1276408 - 388 71084026 y4tM SAR11_1338 - X-Pro dipeptidase 1319 29.18 0 1276409..1277155 - 248 71084027 - SAR11_1339 - racemase 1320 33.03 0 1277497..1278489 + 330 71084028 - SAR11_1340 - luciferase-like monooxygenase 1321 35.71 +1 1278489..1279076 + 195 71084029 - SAR11_1341 - hypothetical protein 1322 26.18 0 1279081..1279863 + 260 71084030 - SAR11_1342 - alpha/beta hydrolase fold 1323 34.08 +1 1279864..1281345 + 493 71084031 dhaS SAR11_1343 - betaine-aldehyde dehydrogenase 1324 28.09 0 1281350..1282207 + 285 71084032 - SAR11_1344 - hypothetical protein 1325 37.64 +2 1282283..1283467 + 394 71084033 livJ SAR11_1346 - hypothetical protein 1326 26.38 0 1283524..1284285 - 253 71084034 - SAR11_1347 - hypothetical protein 1327 30.15 0 1284287..1285450 - 387 71084035 - SAR11_1348 - unknown membrane protein 1328 33.33 0 1285527..1286858 - 443 71084036 livM SAR11_1349 - branched chain amino acid ABC transporter permease 1329 31.85 0 1286894..1287904 - 336 71084037 livH SAR11_1350 - branched chain amino acid ABC transporter permease 1330 32.49 0 1287906..1288613 - 235 71084038 livF SAR11_1351 - ATP-binding protein of branched-chain amino acid ABC transporter 1331 32.20 0 1288613..1289407 - 264 71084039 livG SAR11_1352 - ATP-binding protein of ABC transporter 1332 27.47 0 1289413..1290180 - 255 71084040 - SAR11_1353 - pyrroline-5-carboxylate reductase 1333 28.95 0 1290213..1291124 - 303 71084041 gab SAR11_1354 - hypothetical protein 1334 29.63 0 1291124..1291447 - 107 71084042 - SAR11_1355 - hypothetical protein 1335 31.77 0 1291437..1292141 - 234 71084043 - SAR11_1356 - hypothetical protein 1336 31.99 0 1292141..1292812 - 223 71084044 livF2 SAR11_1357 - ATP-binding protein of branched-chain amino acid ABC transporter 1337 32.12 0 1292926..1293666 - 246 71084045 livG2 SAR11_1358 - ATP-binding protein of ABC transporter natA 1338 34.89 +1 1293666..1294694 - 342 71084046 livM2 SAR11_1359 - high-affinity branched-chain amino acid transport permease protein 1339 33.80 +1 1294718..1295578 - 286 71084047 livH2 SAR11_1360 - high-affinity branched-chain amino acid transport permease protein 1340 36.07 +1 1295676..1296917 - 413 71084048 livJ2 SAR11_1361 - Leu/Ile/Val-binding protein precursor 1341 25.37 0 1297008..1297622 - 204 71084049 rhtB SAR11_1362 - LysE type translocator 1342 31.31 0 1297756..1298052 + 98 71084050 - SAR11_1363 - hypothetical protein 1343 27.06 0 1298056..1298310 + 84 71084051 - SAR11_1364 - glutaredoxin 1344 34.67 +1 1298312..1298686 - 124 71084052 - SAR11_1365 - SelR domain-containing protein 1345 31.86 0 1298690..1299640 - 316 71084053 serA SAR11_1366 - phosphoglycerate dehydrogenase 1346 26.56 0 1299633..1300532 - 299 71084054 - SAR11_1367 - transport protein 1347 32.21 0 1300533..1301774 - 413 71084055 dadA SAR11_1368 - D-amino-acid dehydrogenase small chain 1348 28.88 0 1301843..1302964 - 373 71084056 rodA SAR11_1369 - rod shape-determining protein rodA 1349 29.88 0 1302965..1304932 - 655 71084057 pbpA SAR11_1370 - penicillin binding protein transpeptide 1350 19.92 -2 1304922..1305443 - 173 71084058 mreD SAR11_1371 - rod shape-determining protein MreD 1351 27.19 0 1305440..1306090 - 216 71084059 mreC SAR11_1372 - rod shape-determining protein MreC 1352 35.45 +1 1306297..1307334 - 345 71084060 mreB SAR11_1373 - rod shape-determining protein MreB 1353 32.93 0 1307340..1308584 - 414 71084061 leuA SAR11_1374 - 2-isopropylmalate synthase 1354 36.67 +1 1308630..1308719 + 29 71084062 - SAR11_1375 - hypothetical protein 29.30 MEAN 4.13 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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