IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1230	 32.77	0	1190176..1191780	-	534	71083938	-	SAR11_1250	-	electron transfer flavoprotein-ubiquinone oxidoreductase
1231	 33.33	0	1191819..1192772	-	317	71083939	etfA	SAR11_1251	-	electron transfer flavoprotein alpha-subunit
1232	 33.60	+1	1192772..1193521	-	249	71083940	etfB	SAR11_1252	-	electron transfer flavoprotein beta-chain
1233	 35.31	+1	1193521..1195953	-	810	71083941	-	SAR11_1253	-	dimethylglycine dehydrogenase
1234	 32.92	0	1196013..1196492	-	159	71083942	-	SAR11_1254	-	hypothetical protein
1235	 30.53	0	1196458..1197027	-	189	71083943	-	SAR11_1255	-	putative NADPH-quinone reductase
1236	 23.74	-1	1197066..1197263	+	65	71083944	-	SAR11_1256	-	hypothetical protein
1237	 28.61	0	1197221..1197643	-	140	71083945	-	SAR11_1257	-	hypothetical protein
1238	 27.86	0	1197640..1198059	-	139	71083946	yeeE	SAR11_1258	-	hypothetical protein
1239	 29.68	0	1198060..1198497	-	145	71083947	met17	SAR11_1259	-	unknown CoA binding protein
1240	 29.90	0	1198497..1199282	-	261	71083948	ydbS	SAR11_1260	-	enoyl-CoA hydratase
1241	 30.93	0	1199266..1199640	-	124	71083949	-	SAR11_1261	-	cytidylyltransferase
1242	 32.84	0	1199640..1200047	-	135	71083950	cysC	SAR11_1262	-	adenylylsulfate kinase
1243	 33.58	+1	1200049..1201242	-	397	71083951	-	SAR11_1263	-	dioxygenase alpha chain
1244	 35.53	+1	1201343..1202071	+	242	71083952	metF	SAR11_1264	-	methylenetetrahydrofolate reductase
1245	 37.23	+1	1202064..1203422	+	452	71083953	-	SAR11_1265	-	putative aminomethyltransferase protein
1246	 30.22	0	1203572..1204117	+	181	71083954	-	SAR11_1266	-	membrane protein
1247	 25.15	-1	1204114..1204284	-	56	71083955	-	SAR11_1267	-	hypothetical protein
1248	 29.58	0	1204277..1204888	-	203	71083956	-	SAR11_1268	-	hypothetical protein
1249	 28.49	0	1204894..1206546	-	550	71083957	-	SAR11_1269	-	hypothetical protein
1250	 31.07	0	1206543..1207514	-	323	71083958	-	SAR11_1270	-	dipeptidase
1251	 31.50	0	1207629..1208120	+	163	71083959	-	SAR11_1271	-	phosphoribosylaminoimidazole carboxylase catalytic chain
1252	 26.65	0	1208130..1209176	+	348	71083960	purE	SAR11_1272	-	phosphoribosylaminoimidazole carboxylase ATPase chain (air carboxylase)
1253	 32.48	0	1209188..1209655	+	155	71083961	-	SAR11_1273	-	acetyltransferase
1254	 34.78	+1	1209774..1209980	+	68	71083962	cspL	SAR11_1274	-	cold shock DNA-binding domain-containing protein
1255	 31.56	0	1210062..1210796	-	244	71083963	-	SAR11_1275	-	alpha/beta hydrolase fold
1256	 32.62	0	1210949..1211227	+	92	71083964	-	SAR11_1276	-	hypothetical protein
1257	 27.18	0	1211265..1212011	+	248	71083965	racX	SAR11_1277	-	aspartate racemase
1258	 28.57	0	1212015..1212455	+	146	71083966	-	SAR11_1278	-	hypothetical protein
1259	 28.53	0	1212445..1212756	-	103	71083967	-	SAR11_1279	-	unknown membrane protein
1260	 30.05	0	1212866..1213717	+	283	71083968	-	SAR11_1280	-	hypothetical protein
1261	 25.17	-1	1213722..1214309	-	195	71083969	soxG2	SAR11_1281	-	sarcosine oxidase
1262	 32.47	0	1214306..1217302	-	998	71083970	soxA2	SAR11_1282	-	sarcosine oxidase alpha chain
1263	 32.96	0	1217304..1217570	-	88	71083971	soxD2	SAR11_1283	-	sarcosine oxidase delta chain
1264	 36.20	+1	1217571..1218827	-	418	71083972	soxB2	SAR11_1284	-	sarcosine oxidase beta subunit
1265	 33.33	0	1218954..1220639	+	561	71083973	fhs	SAR11_1285	-	formate-tetrahydrofolate ligase
1266	 29.92	0	1220643..1221434	-	263	71083974	-	SAR11_1286	-	glutamine amidotransferase
1267	 33.08	0	1221431..1222597	-	388	71083975	-	SAR11_1287	-	iron-containing alcohol dehydrogenase
1268	 30.43	0	1222669..1224045	+	458	71083976	ssdH	SAR11_1288	-	aldehyde dehydrogenase
1269	 27.91	0	1224047..1224802	+	251	71083977	-	SAR11_1289	-	short chain dehydrogenase
1270	 38.16	+2	1224850..1225926	-	358	71083978	-	SAR11_1290	-	TRAP-type extracellular solute-binding protein
1271	 34.46	+1	1226064..1227395	-	443	71083979	dctM	SAR11_1292	-	TrapT family protein
1272	 28.63	0	1227395..1227904	-	169	71083980	dctQ	SAR11_1293	-	tripartite ATP-independent periplasmic
1273	 25.13	-1	1227911..1228105	-	64	71083981	-	SAR11_1294	-	hypothetical protein
1274	 30.42	0	1228099..1229127	-	342	71083982	gpsA	SAR11_1295	-	glycerol-3-phosphate dehydrogenase (NAD)
1275	 31.91	0	1229207..1230538	+	443	71083983	-	SAR11_1296	-	putative flavin-containing monooxygenase
1276	 32.96	0	1230571..1232724	-	717	71083984	opuAB	SAR11_1297	-	glycine betaine/L-proline transport system permease
1277	 32.07	0	1232734..1233759	-	341	71083985	opuAA	SAR11_1298	-	glycine betaine/l-proline transport ATP-binding protein
1278	 26.96	0	1233832..1234380	-	182	71083986	-	SAR11_1299	-	unknown membrane protein
1279	 36.51	+1	1234392..1234769	-	125	71083987	-	SAR11_1300	-	MORN repeat-containing protein
1280	 22.29	-1	1234804..1235283	-	159	71083988	-	SAR11_1301	-	unknown membrane protein
1281	 39.15	+2	1235374..1236318	-	314	71083989	opuAC	SAR11_1302	-	substrate-binding region of ABC-type glycine betaine transport system
1282	 32.52	0	1236434..1238761	+	775	71083990	-	SAR11_1303	-	putative aminomethyltransferase protein
1283	 30.48	0	1238765..1239115	+	116	71083991	rpl6e	SAR11_1732	-	ribosomal protein L6e
1284	 35.21	+1	1239215..1240543	+	442	71083992	-	SAR11_1304	-	putative monomeric sarcosine oxidase
1285	 35.58	+1	1240616..1242085	+	489	71083993	-	SAR11_1305	-	GlnT-like protein
1286	 34.18	+1	1242110..1243054	+	314	71083994	-	SAR11_1306	-	glutamine amidotransferase-like protein
1287	 34.27	+1	1243042..1243896	+	284	71083995	-	SAR11_1307	-	GXGXG motif-containing protein
1288	 36.70	+1	1243896..1245320	+	474	71083996	-	SAR11_1308	-	glutamate synthase large subunit-like protein
1289	 31.34	0	1245330..1245731	+	133	71083997	-	SAR11_1309	-	hypothetical protein
1290	 39.40	+2	1245857..1247257	+	466	71083998	amt	SAR11_1310	-	ammonium transporter
1291	 39.56	+2	1247269..1247493	+	74	71083999	-	SAR11_1311	-	unknown membrane protein
1292	 29.41	0	1247554..1247706	+	50	71084000	-	SAR11_1312	-	unknown membrane protein
1293	 31.63	0	1247719..1248597	+	292	71084001	glxB	SAR11_1313	-	glutamine amidotransferase-like protein glxB
1294	 31.28	0	1248601..1249281	+	226	71084002	glxC	SAR11_1314	-	GlxC protein
1295	 36.45	+1	1249284..1250600	+	438	71084003	glxD	SAR11_1315	-	glutamate synthase large subunit
1296	 31.67	0	1250644..1251969	+	441	71084004	glnT	SAR11_1316	-	glutamine synthetase III
1297	 30.53	0	1251973..1253115	+	380	71084005	ygeX	SAR11_1317	-	diaminopropionate ammonia-lyase
1298	 29.47	0	1253122..1254543	+	473	71084006	phrB	SAR11_1318	-	deoxyribodipyrimidine photo-lyase
1299	 31.19	0	1254540..1254959	-	139	71084007	-	SAR11_1319	-	hypothetical protein
1300	 21.02	-2	1254956..1255816	-	286	71084008	-	SAR11_1320	-	AFG1-like ATPase
1301	 32.19	0	1256001..1256438	-	145	71084009	-	SAR11_1321	-	hypothetical protein
1302	 24.50	-1	1256441..1257742	-	433	71084010	-	SAR11_1322	-	PQQ repeat-containing protein
1303	 22.48	-1	1257732..1258376	-	214	71084011	-	SAR11_1323	-	unknown membrane protein
1304	 32.73	0	1258379..1261048	-	889	71084012	acnA	SAR11_1324	-	aconitate hydratase
1305	 27.21	0	1261054..1261641	-	195	71084013	yfiK	SAR11_1325	-	transporter
1306	 30.12	0	1261647..1261988	-	113	71084014	csaA	SAR11_1326	-	CsaA protein
1307	 31.65	0	1262016..1263206	+	396	71084015	argE	SAR11_1327	-	acetylornithine deacetylase
1308	 34.66	+1	1263228..1264664	-	478	71084016	-	SAR11_1328	-	aldehyde dehydrogenase
1309	 35.92	+1	1264679..1265644	-	321	71084017	speB	SAR11_1329	-	agmatinase
1310	 23.04	-1	1265702..1266439	+	245	71084018	-	SAR11_1330	-	putative lipoprotein
1311	 26.67	0	1266439..1267083	+	214	71084019	ppiA	SAR11_1331	-	peptidylprolyl cis-trans isomerase precursor
1312	 22.33	-1	1267165..1268373	+	402	71084020	-	SAR11_1332	-	hypothetical protein
1313	 29.91	0	1268370..1270592	-	740	71084021	fadB	SAR11_1333	-	3-hydroxyacyl-CoA dehydrogenase
1314	 34.50	+1	1270649..1271503	-	284	71084022	potC	SAR11_1334	-	spermidine/putrescine transport system permease protein potc
1315	 31.97	0	1271507..1272754	-	415	71084023	potB	SAR11_1335	-	spermidine/putrescine transport system permease protein potb
1316	 38.95	+2	1272839..1273960	-	373	71084024	potD	SAR11_1336	-	spermidine/putrescine-binding periplasmic protein
1317	 32.78	0	1274095..1275183	-	362	71084025	potA	SAR11_1337	-	spermidine/putrescine transport ATP-binding protein pota
1318	 33.76	+1	1275242..1276408	-	388	71084026	y4tM	SAR11_1338	-	X-Pro dipeptidase
1319	 29.18	0	1276409..1277155	-	248	71084027	-	SAR11_1339	-	racemase
1320	 33.03	0	1277497..1278489	+	330	71084028	-	SAR11_1340	-	luciferase-like monooxygenase
1321	 35.71	+1	1278489..1279076	+	195	71084029	-	SAR11_1341	-	hypothetical protein
1322	 26.18	0	1279081..1279863	+	260	71084030	-	SAR11_1342	-	alpha/beta hydrolase fold
1323	 34.08	+1	1279864..1281345	+	493	71084031	dhaS	SAR11_1343	-	betaine-aldehyde dehydrogenase
1324	 28.09	0	1281350..1282207	+	285	71084032	-	SAR11_1344	-	hypothetical protein
1325	 37.64	+2	1282283..1283467	+	394	71084033	livJ	SAR11_1346	-	hypothetical protein
1326	 26.38	0	1283524..1284285	-	253	71084034	-	SAR11_1347	-	hypothetical protein
1327	 30.15	0	1284287..1285450	-	387	71084035	-	SAR11_1348	-	unknown membrane protein
1328	 33.33	0	1285527..1286858	-	443	71084036	livM	SAR11_1349	-	branched chain amino acid ABC transporter permease
1329	 31.85	0	1286894..1287904	-	336	71084037	livH	SAR11_1350	-	branched chain amino acid ABC transporter permease
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.