IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1179	 34.72	+1	1147089..1147955	+	288	71083887	mmsB	SAR11_1196	-	3-hydroxyisobutyrate dehydrogenase
1180	 32.00	0	1147962..1148561	+	199	71083888	-	SAR11_1197	-	flavin mononucleotide binding protein
1181	 33.33	0	1148558..1149070	-	170	71083889	-	SAR11_1198	-	transferase family protein
1182	 30.45	0	1149091..1149645	+	184	71083890	-	SAR11_1199	-	hypothetical protein
1183	 29.14	0	1149702..1150727	+	341	71083891	amsK	SAR11_1200	-	glycosyl transferase
1184	 33.07	0	1150724..1152226	-	500	71083892	tctA	SAR11_1201	-	putative tricarboxylic transport TctA
1185	 28.66	0	1152223..1152693	-	156	71083893	tctB	SAR11_1202	-	putative tricarboxylic transport tctB
1186	 35.47	+1	1152723..1153703	-	326	71083894	tctC	SAR11_1203	-	putative tricarboxylic transport TctC
1187	 28.78	0	1153904..1155001	+	365	71083895	abrB	SAR11_1204	-	AbrB family transcriptional regulator
1188	 27.55	0	1154993..1155925	-	310	71083896	rfaF	SAR11_1206	-	heptosyltransferase family protein
1189	 23.59	-1	1155958..1156347	+	129	71083897	-	SAR11_1207	-	hypothetical protein
1190	 28.44	0	1156341..1157015	-	224	71083898	oocM	SAR11_1208	-	octopine-like transport system permease protein oocM
1191	 31.60	0	1157015..1157707	-	230	71083899	occQ	SAR11_1209	-	ABC transporter
1192	 36.62	+1	1157753..1158604	-	283	71083900	occT	SAR11_1210	-	ABC transporter
1193	 32.66	0	1158666..1159706	-	346	71083901	speE	SAR11_1211	-	spermine/spermidine synthase
1194	 28.57	0	1159819..1160343	-	174	71083902	pfs	SAR11_1212	-	5'-methylthioadenosine nucleosidase/S-adenosylhomocysteinenucleosidase
1195	 28.41	0	1160381..1160908	+	175	71083903	apt	SAR11_1213	-	adenine phosphoribosyltransferase
1196	 22.17	-1	1160941..1162149	+	402	71083904	-	SAR11_1214	-	TPR repeat-containing protein
1197	 23.25	-1	1162229..1163071	-	280	71083905	-	SAR11_1215	-	sulfotransferase domain-containing protein
1198	 35.09	+1	1163669..1164238	+	189	71083906	ecpD	SAR11_1216	-	fimbrial protein pilin precursor
1199	 29.35	0	1164385..1164786	+	133	71083907	glbN	SAR11_1217	-	globin family protein
1200	 27.49	0	1164991..1165692	+	233	71083908	sigB	SAR11_1218	-	sigma factor SigB regulation protein
1201	 34.65	+1	1165696..1166454	+	252	71083909	-	SAR11_1219	-	fimbrial protein pilin
1202	 23.68	-1	1166737..1166964	-	75	71083910	-	SAR11_1220	-	hypothetical protein
1203	 32.23	0	1167006..1169450	-	814	71083911	-	SAR11_1221	-	sarcosine dehydrogenase
1204	 28.60	0	1169497..1169940	-	147	71083912	cycA	SAR11_1222	-	cytochrome c'
1205	 23.94	-1	1169944..1170486	+	180	71083913	-	SAR11_1223	-	cytochrome b561 family protein
1206	 31.91	0	1170490..1171194	-	234	71083914	-	SAR11_1225	-	hypothetical protein
1207	 20.70	-2	1171170..1171739	-	189	71083915	-	SAR11_1226	-	methyltransferase
1208	 29.25	0	1171935..1172888	+	317	71083916	-	SAR11_1227	-	ADP-ribosylglycohydrolase
1209	 26.21	0	1172889..1174208	+	439	71083917	dinF	SAR11_1228	-	DNA-damage inducible protein F
1210	 30.97	0	1174245..1175258	+	337	71083918	-	SAR11_1229	-	hydroxyacylglutathione hydrolase
1211	 20.66	-2	1175268..1175693	-	141	71083919	-	SAR11_1230	-	hypothetical protein
1212	 28.18	0	1175833..1176201	-	122	71083920	-	SAR11_1231	-	thioredoxin
1213	 25.39	0	1176246..1177139	-	297	71083921	-	SAR11_1232	-	hypothetical protein
1214	 28.26	0	1177163..1177438	-	91	71083922	-	SAR11_1233	-	domain of unknown function (DUF931)
1215	 30.76	0	1177480..1178178	-	232	71083923	azlC	SAR11_1235	-	AzlC protein
1216	 29.18	0	1178198..1179256	-	352	71083924	sfuA	SAR11_1236	-	iron(III) ABC transporter
1217	 27.03	0	1179261..1180877	-	538	71083925	sfuB	SAR11_1237	-	iron(III) ABC transporter
1218	 31.86	0	1180952..1181971	-	339	71083926	sfuC	SAR11_1238	-	iron-uptake ABC transport system periplasmic iron-binding protein
1219	 32.65	0	1182072..1182365	-	97	71083927	-	SAR11_1239	-	hypothetical protein
1220	 33.80	+1	1182407..1183681	-	424	71083928	aceA	SAR11_1240	-	isocitrate lyase
1221	 31.48	0	1183727..1183888	-	53	71083929	-	SAR11_1241	-	hypothetical protein
1222	 29.85	0	1184000..1185433	+	477	71083930	-	SAR11_1242	-	transcription regulator
1223	 30.86	0	1185434..1186324	-	296	71083931	-	SAR11_1243	-	transcriptional regulator
1224	 31.64	0	1186325..1187326	-	333	71083932	yhdH	SAR11_1244	-	zinc-binding alcohol dehydrogenase
1225	 31.86	0	1187347..1187955	-	202	71083933	folE	SAR11_1245	-	GTP cyclohydrolase I
1226	 30.88	0	1188012..1188500	+	162	71083934	hisI	SAR11_1246	-	phosphoribosyl-AMP cyclohydrolase
1227	 36.00	+1	1188501..1188875	+	124	71083935	-	SAR11_1247	-	hypothetical protein
1228	 26.75	0	1188881..1189852	-	323	71083936	-	SAR11_1248	-	hypothetical protein
1229	 31.96	0	1189957..1190175	+	72	71083937	-	SAR11_1249	-	hypothetical protein
1230	 32.77	0	1190176..1191780	-	534	71083938	-	SAR11_1250	-	electron transfer flavoprotein-ubiquinone oxidoreductase
1231	 33.33	0	1191819..1192772	-	317	71083939	etfA	SAR11_1251	-	electron transfer flavoprotein alpha-subunit
1232	 33.60	+1	1192772..1193521	-	249	71083940	etfB	SAR11_1252	-	electron transfer flavoprotein beta-chain
1233	 35.31	+1	1193521..1195953	-	810	71083941	-	SAR11_1253	-	dimethylglycine dehydrogenase
1234	 32.92	0	1196013..1196492	-	159	71083942	-	SAR11_1254	-	hypothetical protein
1235	 30.53	0	1196458..1197027	-	189	71083943	-	SAR11_1255	-	putative NADPH-quinone reductase
1236	 23.74	-1	1197066..1197263	+	65	71083944	-	SAR11_1256	-	hypothetical protein
1237	 28.61	0	1197221..1197643	-	140	71083945	-	SAR11_1257	-	hypothetical protein
1238	 27.86	0	1197640..1198059	-	139	71083946	yeeE	SAR11_1258	-	hypothetical protein
1239	 29.68	0	1198060..1198497	-	145	71083947	met17	SAR11_1259	-	unknown CoA binding protein
1240	 29.90	0	1198497..1199282	-	261	71083948	ydbS	SAR11_1260	-	enoyl-CoA hydratase
1241	 30.93	0	1199266..1199640	-	124	71083949	-	SAR11_1261	-	cytidylyltransferase
1242	 32.84	0	1199640..1200047	-	135	71083950	cysC	SAR11_1262	-	adenylylsulfate kinase
1243	 33.58	+1	1200049..1201242	-	397	71083951	-	SAR11_1263	-	dioxygenase alpha chain
1244	 35.53	+1	1201343..1202071	+	242	71083952	metF	SAR11_1264	-	methylenetetrahydrofolate reductase
1245	 37.23	+1	1202064..1203422	+	452	71083953	-	SAR11_1265	-	putative aminomethyltransferase protein
1246	 30.22	0	1203572..1204117	+	181	71083954	-	SAR11_1266	-	membrane protein
1247	 25.15	-1	1204114..1204284	-	56	71083955	-	SAR11_1267	-	hypothetical protein
1248	 29.58	0	1204277..1204888	-	203	71083956	-	SAR11_1268	-	hypothetical protein
1249	 28.49	0	1204894..1206546	-	550	71083957	-	SAR11_1269	-	hypothetical protein
1250	 31.07	0	1206543..1207514	-	323	71083958	-	SAR11_1270	-	dipeptidase
1251	 31.50	0	1207629..1208120	+	163	71083959	-	SAR11_1271	-	phosphoribosylaminoimidazole carboxylase catalytic chain
1252	 26.65	0	1208130..1209176	+	348	71083960	purE	SAR11_1272	-	phosphoribosylaminoimidazole carboxylase ATPase chain (air carboxylase)
1253	 32.48	0	1209188..1209655	+	155	71083961	-	SAR11_1273	-	acetyltransferase
1254	 34.78	+1	1209774..1209980	+	68	71083962	cspL	SAR11_1274	-	cold shock DNA-binding domain-containing protein
1255	 31.56	0	1210062..1210796	-	244	71083963	-	SAR11_1275	-	alpha/beta hydrolase fold
1256	 32.62	0	1210949..1211227	+	92	71083964	-	SAR11_1276	-	hypothetical protein
1257	 27.18	0	1211265..1212011	+	248	71083965	racX	SAR11_1277	-	aspartate racemase
1258	 28.57	0	1212015..1212455	+	146	71083966	-	SAR11_1278	-	hypothetical protein
1259	 28.53	0	1212445..1212756	-	103	71083967	-	SAR11_1279	-	unknown membrane protein
1260	 30.05	0	1212866..1213717	+	283	71083968	-	SAR11_1280	-	hypothetical protein
1261	 25.17	-1	1213722..1214309	-	195	71083969	soxG2	SAR11_1281	-	sarcosine oxidase
1262	 32.47	0	1214306..1217302	-	998	71083970	soxA2	SAR11_1282	-	sarcosine oxidase alpha chain
1263	 32.96	0	1217304..1217570	-	88	71083971	soxD2	SAR11_1283	-	sarcosine oxidase delta chain
1264	 36.20	+1	1217571..1218827	-	418	71083972	soxB2	SAR11_1284	-	sarcosine oxidase beta subunit
1265	 33.33	0	1218954..1220639	+	561	71083973	fhs	SAR11_1285	-	formate-tetrahydrofolate ligase
1266	 29.92	0	1220643..1221434	-	263	71083974	-	SAR11_1286	-	glutamine amidotransferase
1267	 33.08	0	1221431..1222597	-	388	71083975	-	SAR11_1287	-	iron-containing alcohol dehydrogenase
1268	 30.43	0	1222669..1224045	+	458	71083976	ssdH	SAR11_1288	-	aldehyde dehydrogenase
1269	 27.91	0	1224047..1224802	+	251	71083977	-	SAR11_1289	-	short chain dehydrogenase
1270	 38.16	+2	1224850..1225926	-	358	71083978	-	SAR11_1290	-	TRAP-type extracellular solute-binding protein
1271	 34.46	+1	1226064..1227395	-	443	71083979	dctM	SAR11_1292	-	TrapT family protein
1272	 28.63	0	1227395..1227904	-	169	71083980	dctQ	SAR11_1293	-	tripartite ATP-independent periplasmic
1273	 25.13	-1	1227911..1228105	-	64	71083981	-	SAR11_1294	-	hypothetical protein
1274	 30.42	0	1228099..1229127	-	342	71083982	gpsA	SAR11_1295	-	glycerol-3-phosphate dehydrogenase (NAD)
1275	 31.91	0	1229207..1230538	+	443	71083983	-	SAR11_1296	-	putative flavin-containing monooxygenase
1276	 32.96	0	1230571..1232724	-	717	71083984	opuAB	SAR11_1297	-	glycine betaine/L-proline transport system permease
1277	 32.07	0	1232734..1233759	-	341	71083985	opuAA	SAR11_1298	-	glycine betaine/l-proline transport ATP-binding protein
1278	 26.96	0	1233832..1234380	-	182	71083986	-	SAR11_1299	-	unknown membrane protein
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.