version 1.0
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759 1354 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1175 28.24 0 1143439..1144203 - 254 71083883 - SAR11_1192 - hypothetical protein 1176 32.73 0 1144265..1145257 - 330 71083884 - SAR11_1193 - tRNA-dihydrouridine synthase A 1177 34.25 +1 1145280..1145822 - 180 71083885 rpoZ SAR11_1194 - DNA-directed RNA polymerase omega chain (RNAP omega subunit) 1178 29.20 0 1145866..1147074 - 402 71083886 - SAR11_1195 - membrane permease of unknown function 1179 34.72 +1 1147089..1147955 + 288 71083887 mmsB SAR11_1196 - 3-hydroxyisobutyrate dehydrogenase 1180 32.00 0 1147962..1148561 + 199 71083888 - SAR11_1197 - flavin mononucleotide binding protein 1181 33.33 0 1148558..1149070 - 170 71083889 - SAR11_1198 - transferase family protein 1182 30.45 0 1149091..1149645 + 184 71083890 - SAR11_1199 - hypothetical protein 1183 29.14 0 1149702..1150727 + 341 71083891 amsK SAR11_1200 - glycosyl transferase 1184 33.07 0 1150724..1152226 - 500 71083892 tctA SAR11_1201 - putative tricarboxylic transport TctA 1185 28.66 0 1152223..1152693 - 156 71083893 tctB SAR11_1202 - putative tricarboxylic transport tctB 1186 35.47 +1 1152723..1153703 - 326 71083894 tctC SAR11_1203 - putative tricarboxylic transport TctC 1187 28.78 0 1153904..1155001 + 365 71083895 abrB SAR11_1204 - AbrB family transcriptional regulator 1188 27.55 0 1154993..1155925 - 310 71083896 rfaF SAR11_1206 - heptosyltransferase family protein 1189 23.59 -1 1155958..1156347 + 129 71083897 - SAR11_1207 - hypothetical protein 1190 28.44 0 1156341..1157015 - 224 71083898 oocM SAR11_1208 - octopine-like transport system permease protein oocM 1191 31.60 0 1157015..1157707 - 230 71083899 occQ SAR11_1209 - ABC transporter 1192 36.62 +1 1157753..1158604 - 283 71083900 occT SAR11_1210 - ABC transporter 1193 32.66 0 1158666..1159706 - 346 71083901 speE SAR11_1211 - spermine/spermidine synthase 1194 28.57 0 1159819..1160343 - 174 71083902 pfs SAR11_1212 - 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteinenucleosidase 1195 28.41 0 1160381..1160908 + 175 71083903 apt SAR11_1213 - adenine phosphoribosyltransferase 1196 22.17 -1 1160941..1162149 + 402 71083904 - SAR11_1214 - TPR repeat-containing protein 1197 23.25 -1 1162229..1163071 - 280 71083905 - SAR11_1215 - sulfotransferase domain-containing protein 1198 35.09 +1 1163669..1164238 + 189 71083906 ecpD SAR11_1216 - fimbrial protein pilin precursor 1199 29.35 0 1164385..1164786 + 133 71083907 glbN SAR11_1217 - globin family protein 1200 27.49 0 1164991..1165692 + 233 71083908 sigB SAR11_1218 - sigma factor SigB regulation protein 1201 34.65 +1 1165696..1166454 + 252 71083909 - SAR11_1219 - fimbrial protein pilin 1202 23.68 -1 1166737..1166964 - 75 71083910 - SAR11_1220 - hypothetical protein 1203 32.23 0 1167006..1169450 - 814 71083911 - SAR11_1221 - sarcosine dehydrogenase 1204 28.60 0 1169497..1169940 - 147 71083912 cycA SAR11_1222 - cytochrome c' 1205 23.94 -1 1169944..1170486 + 180 71083913 - SAR11_1223 - cytochrome b561 family protein 1206 31.91 0 1170490..1171194 - 234 71083914 - SAR11_1225 - hypothetical protein 1207 20.70 -2 1171170..1171739 - 189 71083915 - SAR11_1226 - methyltransferase 1208 29.25 0 1171935..1172888 + 317 71083916 - SAR11_1227 - ADP-ribosylglycohydrolase 1209 26.21 0 1172889..1174208 + 439 71083917 dinF SAR11_1228 - DNA-damage inducible protein F 1210 30.97 0 1174245..1175258 + 337 71083918 - SAR11_1229 - hydroxyacylglutathione hydrolase 1211 20.66 -2 1175268..1175693 - 141 71083919 - SAR11_1230 - hypothetical protein 1212 28.18 0 1175833..1176201 - 122 71083920 - SAR11_1231 - thioredoxin 1213 25.39 0 1176246..1177139 - 297 71083921 - SAR11_1232 - hypothetical protein 1214 28.26 0 1177163..1177438 - 91 71083922 - SAR11_1233 - domain of unknown function (DUF931) 1215 30.76 0 1177480..1178178 - 232 71083923 azlC SAR11_1235 - AzlC protein 1216 29.18 0 1178198..1179256 - 352 71083924 sfuA SAR11_1236 - iron(III) ABC transporter 1217 27.03 0 1179261..1180877 - 538 71083925 sfuB SAR11_1237 - iron(III) ABC transporter 1218 31.86 0 1180952..1181971 - 339 71083926 sfuC SAR11_1238 - iron-uptake ABC transport system periplasmic iron-binding protein 1219 32.65 0 1182072..1182365 - 97 71083927 - SAR11_1239 - hypothetical protein 1220 33.80 +1 1182407..1183681 - 424 71083928 aceA SAR11_1240 - isocitrate lyase 1221 31.48 0 1183727..1183888 - 53 71083929 - SAR11_1241 - hypothetical protein 1222 29.85 0 1184000..1185433 + 477 71083930 - SAR11_1242 - transcription regulator 1223 30.86 0 1185434..1186324 - 296 71083931 - SAR11_1243 - transcriptional regulator 1224 31.64 0 1186325..1187326 - 333 71083932 yhdH SAR11_1244 - zinc-binding alcohol dehydrogenase 1225 31.86 0 1187347..1187955 - 202 71083933 folE SAR11_1245 - GTP cyclohydrolase I 1226 30.88 0 1188012..1188500 + 162 71083934 hisI SAR11_1246 - phosphoribosyl-AMP cyclohydrolase 1227 36.00 +1 1188501..1188875 + 124 71083935 - SAR11_1247 - hypothetical protein 1228 26.75 0 1188881..1189852 - 323 71083936 - SAR11_1248 - hypothetical protein 1229 31.96 0 1189957..1190175 + 72 71083937 - SAR11_1249 - hypothetical protein 1230 32.77 0 1190176..1191780 - 534 71083938 - SAR11_1250 - electron transfer flavoprotein-ubiquinone oxidoreductase 1231 33.33 0 1191819..1192772 - 317 71083939 etfA SAR11_1251 - electron transfer flavoprotein alpha-subunit 1232 33.60 +1 1192772..1193521 - 249 71083940 etfB SAR11_1252 - electron transfer flavoprotein beta-chain 1233 35.31 +1 1193521..1195953 - 810 71083941 - SAR11_1253 - dimethylglycine dehydrogenase 1234 32.92 0 1196013..1196492 - 159 71083942 - SAR11_1254 - hypothetical protein 1235 30.53 0 1196458..1197027 - 189 71083943 - SAR11_1255 - putative NADPH-quinone reductase 1236 23.74 -1 1197066..1197263 + 65 71083944 - SAR11_1256 - hypothetical protein 1237 28.61 0 1197221..1197643 - 140 71083945 - SAR11_1257 - hypothetical protein 1238 27.86 0 1197640..1198059 - 139 71083946 yeeE SAR11_1258 - hypothetical protein 1239 29.68 0 1198060..1198497 - 145 71083947 met17 SAR11_1259 - unknown CoA binding protein 1240 29.90 0 1198497..1199282 - 261 71083948 ydbS SAR11_1260 - enoyl-CoA hydratase 1241 30.93 0 1199266..1199640 - 124 71083949 - SAR11_1261 - cytidylyltransferase 1242 32.84 0 1199640..1200047 - 135 71083950 cysC SAR11_1262 - adenylylsulfate kinase 1243 33.58 +1 1200049..1201242 - 397 71083951 - SAR11_1263 - dioxygenase alpha chain 1244 35.53 +1 1201343..1202071 + 242 71083952 metF SAR11_1264 - methylenetetrahydrofolate reductase 1245 37.23 +1 1202064..1203422 + 452 71083953 - SAR11_1265 - putative aminomethyltransferase protein 1246 30.22 0 1203572..1204117 + 181 71083954 - SAR11_1266 - membrane protein 1247 25.15 -1 1204114..1204284 - 56 71083955 - SAR11_1267 - hypothetical protein 1248 29.58 0 1204277..1204888 - 203 71083956 - SAR11_1268 - hypothetical protein 1249 28.49 0 1204894..1206546 - 550 71083957 - SAR11_1269 - hypothetical protein 1250 31.07 0 1206543..1207514 - 323 71083958 - SAR11_1270 - dipeptidase 1251 31.50 0 1207629..1208120 + 163 71083959 - SAR11_1271 - phosphoribosylaminoimidazole carboxylase catalytic chain 1252 26.65 0 1208130..1209176 + 348 71083960 purE SAR11_1272 - phosphoribosylaminoimidazole carboxylase ATPase chain (air carboxylase) 1253 32.48 0 1209188..1209655 + 155 71083961 - SAR11_1273 - acetyltransferase 1254 34.78 +1 1209774..1209980 + 68 71083962 cspL SAR11_1274 - cold shock DNA-binding domain-containing protein 1255 31.56 0 1210062..1210796 - 244 71083963 - SAR11_1275 - alpha/beta hydrolase fold 1256 32.62 0 1210949..1211227 + 92 71083964 - SAR11_1276 - hypothetical protein 1257 27.18 0 1211265..1212011 + 248 71083965 racX SAR11_1277 - aspartate racemase 1258 28.57 0 1212015..1212455 + 146 71083966 - SAR11_1278 - hypothetical protein 1259 28.53 0 1212445..1212756 - 103 71083967 - SAR11_1279 - unknown membrane protein 1260 30.05 0 1212866..1213717 + 283 71083968 - SAR11_1280 - hypothetical protein 1261 25.17 -1 1213722..1214309 - 195 71083969 soxG2 SAR11_1281 - sarcosine oxidase 1262 32.47 0 1214306..1217302 - 998 71083970 soxA2 SAR11_1282 - sarcosine oxidase alpha chain 1263 32.96 0 1217304..1217570 - 88 71083971 soxD2 SAR11_1283 - sarcosine oxidase delta chain 1264 36.20 +1 1217571..1218827 - 418 71083972 soxB2 SAR11_1284 - sarcosine oxidase beta subunit 1265 33.33 0 1218954..1220639 + 561 71083973 fhs SAR11_1285 - formate-tetrahydrofolate ligase 1266 29.92 0 1220643..1221434 - 263 71083974 - SAR11_1286 - glutamine amidotransferase 1267 33.08 0 1221431..1222597 - 388 71083975 - SAR11_1287 - iron-containing alcohol dehydrogenase 1268 30.43 0 1222669..1224045 + 458 71083976 ssdH SAR11_1288 - aldehyde dehydrogenase 1269 27.91 0 1224047..1224802 + 251 71083977 - SAR11_1289 - short chain dehydrogenase 1270 38.16 +2 1224850..1225926 - 358 71083978 - SAR11_1290 - TRAP-type extracellular solute-binding protein 1271 34.46 +1 1226064..1227395 - 443 71083979 dctM SAR11_1292 - TrapT family protein 1272 28.63 0 1227395..1227904 - 169 71083980 dctQ SAR11_1293 - tripartite ATP-independent periplasmic 1273 25.13 -1 1227911..1228105 - 64 71083981 - SAR11_1294 - hypothetical protein 1274 30.42 0 1228099..1229127 - 342 71083982 gpsA SAR11_1295 - glycerol-3-phosphate dehydrogenase (NAD) 29.30 MEAN 4.13 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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