IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1123	 28.21	0	1097307..1098497	-	396	71083831	cfa	SAR11_1144	-	cyclopropane-fatty-acyl-phospholipid synthase
1124	 30.58	0	1098633..1099250	-	205	71083832	rpsD	SAR11_1145	-	30S ribosomal protein S4
1125	 27.31	0	1099291..1100004	-	237	71083833	-	SAR11_1146	-	SpoU rRNA methylase family
1126	 32.77	0	1100004..1101605	-	533	71083834	-	SAR11_1147	-	alpha-isopropylmalate/homocitrate synthase family transferase
1127	 27.90	0	1101602..1102963	-	453	71083835	cysS	SAR11_1148	-	cysteinyl-tRNA synthetase
1128	 33.19	0	1103009..1103695	-	228	71083836	nadE	SAR11_1149	-	NH(3)-dependent NAD+ synthetase NadE
1129	 32.10	0	1103786..1105165	-	459	71083837	dhs	SAR11_1150	-	2-dehydro-3-deoxy-phosphoheptonate aldolase
1130	 31.08	0	1105201..1107021	-	606	71083838	glmS	SAR11_1151	-	glutamine-fructose-6-phosphate transaminase (isomerizing)
1131	 27.40	0	1107023..1107646	-	207	71083839	glmU	SAR11_1152	-	UDP-N-acetylglucosamine diphosphorylase
1132	 30.00	0	1107717..1108406	+	229	71083840	gph	SAR11_1153	-	phosphoglycolate phosphatase
1133	 32.20	0	1108457..1109959	+	500	71083841	prpD	SAR11_1154	-	2-methylcitrate dehydratase 2
1134	 30.99	0	1109959..1110855	+	298	71083842	prpB	SAR11_1155	-	hypothetical protein
1135	 31.02	0	1110855..1111979	+	374	71083843	prpC	SAR11_1156	-	methylcitrate synthase
1136	 29.51	0	1111980..1112606	-	208	71083844	-	SAR11_1157	-	methyltransferase
1137	 33.93	+1	1112611..1113624	-	337	71083845	nrdF	SAR11_1158	-	ribonucleotide-diphosphate reductase subunit beta
1138	 33.64	+1	1113630..1115567	-	645	71083846	nrdA	SAR11_1159	-	ribonucleotide-diphosphate reductase subunit alpha
1139	 30.52	0	1115724..1117178	+	484	71083847	manB	SAR11_1160	-	phosphomannomutase
1140	 32.62	0	1117162..1117443	+	93	71083848	-	SAR11_1728	-	hypothetical protein
1141	 31.04	0	1117612..1118571	-	319	71083849	sbcC	SAR11_1161	-	sbcC
1142	 29.03	0	1118568..1119218	-	216	71083850	-	SAR11_1162	-	hypothetical protein
1143	 29.89	0	1119467..1119844	-	125	71083851	-	SAR11_1163	-	hypothetical protein
1144	 31.56	0	1119848..1120411	-	187	71083852	-	SAR11_1164	-	lipoprotein
1145	 28.06	0	1120857..1121216	+	119	71083853	-	SAR11_1165	-	exonuclease
1146	 22.92	-1	1121220..1121555	-	111	71083854	-	SAR11_1166	-	hypothetical protein
1147	 30.86	0	1121545..1122273	-	242	71083855	-	SAR11_1167	-	hypothetical protein
1148	 40.68	+2	1122281..1122634	-	117	71083856	-	SAR11_1168	-	hypothetical protein
1149	 31.67	0	1122717..1123616	-	299	71083857	-	SAR11_1169	-	hypothetical protein
1150	 24.19	-1	1123935..1124120	-	61	71083858	-	SAR11_1170	-	hypothetical protein
1151	 30.36	0	1124146..1125489	-	447	71083859	ordL	SAR11_1171	-	oxidoreductase
1152	 34.06	+1	1125607..1126158	-	183	71083860	osmC	SAR11_1172	-	OsmC-like protein
1153	 34.84	+1	1126231..1127292	-	353	71083861	bhmT	SAR11_1173	-	betaine-homocysteine methyltransferase
1154	 26.67	0	1127554..1127718	-	54	71083862	-	SAR11_1730	-	hypothetical protein
1155	 34.78	+1	1127719..1127925	-	68	71083863	-	SAR11_1729	-	hypothetical protein
1156	 30.40	0	1128011..1128691	-	226	71083864	phoB	SAR11_1174	-	phosphate regulatory protein
1157	 31.90	0	1128691..1129389	-	232	71083865	phoU	SAR11_1175	-	phosphate transport regulon regulator PhoU
1158	 31.51	0	1129392..1130159	-	255	71083866	pstB	SAR11_1176	-	phosphate ABC transporter
1159	 31.67	0	1130159..1131418	-	419	71083867	pstA	SAR11_1177	-	ABC transporter
1160	 30.76	0	1131411..1132811	-	466	71083868	pstC	SAR11_1178	-	ABC transporter
1161	 35.40	+1	1132929..1133945	-	338	71083869	pstS	SAR11_1179	-	phosphate ABC transporter
1162	 27.30	0	1134061..1135104	-	347	71083870	phoR	SAR11_1180	-	phosphate regulon
1163	 34.78	+1	1135181..1136146	+	321	71083871	-	SAR11_1181	-	hypothetical protein
1164	 37.58	+2	1136254..1136418	-	54	71083872	-	SAR11_1731	-	hypothetical protein
1165	 26.78	0	1136415..1136597	-	60	71083873	-	SAR11_1182	-	hypothetical protein
1166	 32.80	0	1136605..1136979	-	124	71083874	-	SAR11_1183	-	hypothetical protein
1167	 30.77	0	1137048..1137476	-	142	71083875	cytC	SAR11_1184	-	cytochrome c
1168	 29.49	0	1137555..1138439	+	294	71083876	-	SAR11_1185	-	hypothetical protein
1169	 30.73	0	1138454..1138990	-	178	71083877	-	SAR11_1186	-	hypothetical protein
1170	 29.69	0	1139061..1140461	-	466	71083878	gdhA	SAR11_1187	-	glutamate dehydrogenase [NAD(P)] precursor
1171	 33.95	+1	1140479..1140967	-	162	71083879	-	SAR11_1188	-	hypothetical protein
1172	 33.33	0	1140964..1141257	-	97	71083880	-	SAR11_1189	-	hypothetical protein
1173	 33.89	+1	1141259..1142869	-	536	71083881	-	SAR11_1190	-	sulfate permease family protein
1174	 24.69	-1	1143032..1143436	-	134	71083882	-	SAR11_1191	-	HIT domain-containing protein
1175	 28.24	0	1143439..1144203	-	254	71083883	-	SAR11_1192	-	hypothetical protein
1176	 32.73	0	1144265..1145257	-	330	71083884	-	SAR11_1193	-	tRNA-dihydrouridine synthase A
1177	 34.25	+1	1145280..1145822	-	180	71083885	rpoZ	SAR11_1194	-	DNA-directed RNA polymerase omega chain (RNAP omega subunit)
1178	 29.20	0	1145866..1147074	-	402	71083886	-	SAR11_1195	-	membrane permease of unknown function
1179	 34.72	+1	1147089..1147955	+	288	71083887	mmsB	SAR11_1196	-	3-hydroxyisobutyrate dehydrogenase
1180	 32.00	0	1147962..1148561	+	199	71083888	-	SAR11_1197	-	flavin mononucleotide binding protein
1181	 33.33	0	1148558..1149070	-	170	71083889	-	SAR11_1198	-	transferase family protein
1182	 30.45	0	1149091..1149645	+	184	71083890	-	SAR11_1199	-	hypothetical protein
1183	 29.14	0	1149702..1150727	+	341	71083891	amsK	SAR11_1200	-	glycosyl transferase
1184	 33.07	0	1150724..1152226	-	500	71083892	tctA	SAR11_1201	-	putative tricarboxylic transport TctA
1185	 28.66	0	1152223..1152693	-	156	71083893	tctB	SAR11_1202	-	putative tricarboxylic transport tctB
1186	 35.47	+1	1152723..1153703	-	326	71083894	tctC	SAR11_1203	-	putative tricarboxylic transport TctC
1187	 28.78	0	1153904..1155001	+	365	71083895	abrB	SAR11_1204	-	AbrB family transcriptional regulator
1188	 27.55	0	1154993..1155925	-	310	71083896	rfaF	SAR11_1206	-	heptosyltransferase family protein
1189	 23.59	-1	1155958..1156347	+	129	71083897	-	SAR11_1207	-	hypothetical protein
1190	 28.44	0	1156341..1157015	-	224	71083898	oocM	SAR11_1208	-	octopine-like transport system permease protein oocM
1191	 31.60	0	1157015..1157707	-	230	71083899	occQ	SAR11_1209	-	ABC transporter
1192	 36.62	+1	1157753..1158604	-	283	71083900	occT	SAR11_1210	-	ABC transporter
1193	 32.66	0	1158666..1159706	-	346	71083901	speE	SAR11_1211	-	spermine/spermidine synthase
1194	 28.57	0	1159819..1160343	-	174	71083902	pfs	SAR11_1212	-	5'-methylthioadenosine nucleosidase/S-adenosylhomocysteinenucleosidase
1195	 28.41	0	1160381..1160908	+	175	71083903	apt	SAR11_1213	-	adenine phosphoribosyltransferase
1196	 22.17	-1	1160941..1162149	+	402	71083904	-	SAR11_1214	-	TPR repeat-containing protein
1197	 23.25	-1	1162229..1163071	-	280	71083905	-	SAR11_1215	-	sulfotransferase domain-containing protein
1198	 35.09	+1	1163669..1164238	+	189	71083906	ecpD	SAR11_1216	-	fimbrial protein pilin precursor
1199	 29.35	0	1164385..1164786	+	133	71083907	glbN	SAR11_1217	-	globin family protein
1200	 27.49	0	1164991..1165692	+	233	71083908	sigB	SAR11_1218	-	sigma factor SigB regulation protein
1201	 34.65	+1	1165696..1166454	+	252	71083909	-	SAR11_1219	-	fimbrial protein pilin
1202	 23.68	-1	1166737..1166964	-	75	71083910	-	SAR11_1220	-	hypothetical protein
1203	 32.23	0	1167006..1169450	-	814	71083911	-	SAR11_1221	-	sarcosine dehydrogenase
1204	 28.60	0	1169497..1169940	-	147	71083912	cycA	SAR11_1222	-	cytochrome c'
1205	 23.94	-1	1169944..1170486	+	180	71083913	-	SAR11_1223	-	cytochrome b561 family protein
1206	 31.91	0	1170490..1171194	-	234	71083914	-	SAR11_1225	-	hypothetical protein
1207	 20.70	-2	1171170..1171739	-	189	71083915	-	SAR11_1226	-	methyltransferase
1208	 29.25	0	1171935..1172888	+	317	71083916	-	SAR11_1227	-	ADP-ribosylglycohydrolase
1209	 26.21	0	1172889..1174208	+	439	71083917	dinF	SAR11_1228	-	DNA-damage inducible protein F
1210	 30.97	0	1174245..1175258	+	337	71083918	-	SAR11_1229	-	hydroxyacylglutathione hydrolase
1211	 20.66	-2	1175268..1175693	-	141	71083919	-	SAR11_1230	-	hypothetical protein
1212	 28.18	0	1175833..1176201	-	122	71083920	-	SAR11_1231	-	thioredoxin
1213	 25.39	0	1176246..1177139	-	297	71083921	-	SAR11_1232	-	hypothetical protein
1214	 28.26	0	1177163..1177438	-	91	71083922	-	SAR11_1233	-	domain of unknown function (DUF931)
1215	 30.76	0	1177480..1178178	-	232	71083923	azlC	SAR11_1235	-	AzlC protein
1216	 29.18	0	1178198..1179256	-	352	71083924	sfuA	SAR11_1236	-	iron(III) ABC transporter
1217	 27.03	0	1179261..1180877	-	538	71083925	sfuB	SAR11_1237	-	iron(III) ABC transporter
1218	 31.86	0	1180952..1181971	-	339	71083926	sfuC	SAR11_1238	-	iron-uptake ABC transport system periplasmic iron-binding protein
1219	 32.65	0	1182072..1182365	-	97	71083927	-	SAR11_1239	-	hypothetical protein
1220	 33.80	+1	1182407..1183681	-	424	71083928	aceA	SAR11_1240	-	isocitrate lyase
1221	 31.48	0	1183727..1183888	-	53	71083929	-	SAR11_1241	-	hypothetical protein
1222	 29.85	0	1184000..1185433	+	477	71083930	-	SAR11_1242	-	transcription regulator
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.