IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1086	 33.33	0	1065908..1066276	-	122	71083794	rplN	SAR11_1107	-	50S ribosomal protein L14
1087	 27.00	0	1066273..1066509	-	78	71083795	rpsQ	SAR11_1108	-	ribosomal protein S17
1088	 20.31	-2	1066502..1066693	-	63	71083796	rpmC	SAR11_1109	-	ribosomal L29 protein
1089	 35.52	+1	1066695..1067105	-	136	71083797	rplP	SAR11_1110	-	50S ribosomal protein L16
1090	 30.25	0	1067108..1067788	-	226	71083798	rpsC	SAR11_1111	-	30S ribosomal protein S3
1091	 28.57	0	1067772..1068170	-	132	71083799	rplV	SAR11_1112	-	50S ribosomal protein L22
1092	 30.27	0	1068173..1068466	-	97	71083800	rpsS	SAR11_1113	-	30S ribosomal protein S19
1093	 35.58	+1	1068466..1069311	-	281	71083801	rplB	SAR11_1114	-	50S ribosomal protein L2
1094	 25.85	0	1069314..1069607	-	97	71083802	rplW	SAR11_1115	-	ribosomal protein L23
1095	 25.32	0	1069609..1070232	-	207	71083803	rplD	SAR11_1116	-	ribosomal protein L4
1096	 30.10	0	1070232..1070942	-	236	71083804	rplC	SAR11_1117	-	50S ribosomal protein L3
1097	 30.42	0	1070945..1071253	-	102	71083805	rpsJ	SAR11_1118	-	30S ribosomal protein S10
1098	 34.58	+1	1071259..1073337	-	692	71083806	fusA	SAR11_1119	-	translation elongation factor EF-G
1099	 30.36	0	1073344..1073814	-	156	71083807	rpsG	SAR11_1120	-	30S ribosomal protein S7
1100	 34.68	+1	1073817..1074188	-	123	71083808	rpsL	SAR11_1121	-	30S ribosomal protein S12
1101	 32.66	0	1074360..1078529	-	1389	71083809	rpoC	SAR11_1122	-	DNA-directed RNA polymerase beta prime chain
1102	 31.38	0	1078532..1082623	-	1363	71083810	rpoB	SAR11_1123	-	DNA-directed RNA polymerase
1103	 37.98	+2	1082679..1083044	-	121	71083811	rplL	SAR11_1124	-	50S ribosomal protein L31
1104	 33.13	0	1083072..1083572	-	166	71083812	rplJ	SAR11_1125	-	50S ribosomal protein L10P
1105	 30.00	0	1083578..1084267	-	229	71083813	rplA	SAR11_1126	-	ribosomal protein L1
1106	 35.21	+1	1084267..1084692	-	141	71083814	rplK	SAR11_1127	-	ribosomal protein L11
1107	 32.02	0	1084692..1085222	-	176	71083815	nusG	SAR11_1128	-	transcription antitermination protein NusG
1108	 31.25	0	1085222..1085413	-	63	71083816	secE	SAR11_1129	-	protein secE/sec61-gamma protein
1109	 36.36	+1	1085516..1086706	-	396	71083817	tufB	SAR11_1130	-	elongation factor Tu
1110	 29.30	0	1087091..1087834	+	247	71083818	-	SAR11_1131	-	SpoU rRNA methylase family
1111	 25.38	0	1087948..1088727	-	259	71083819	ppnK	SAR11_1132	-	inorganic polyphosphate/ATP-NAD kinase
1112	 23.88	-1	1088896..1089297	-	133	71083820	-	SAR11_1133	-	hypothetical protein
1113	 30.53	0	1089302..1090051	-	249	71083821	-	SAR11_1134	-	hypothetical protein
1114	 27.47	0	1090073..1090771	+	232	71083822	sfsA	SAR11_1135	-	sugar fermentation stimulation protein
1115	 33.07	0	1090764..1091534	+	256	71083823	map	SAR11_1136	-	methionine aminopeptidase
1116	 30.24	0	1091538..1092830	+	430	71083824	purB	SAR11_1137	-	adenylosuccinate lyase
1117	 27.59	0	1092830..1093612	+	260	71083825	purC	SAR11_1138	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1118	 28.40	0	1093614..1093856	+	80	71083826	-	SAR11_1139	-	phosphoribosylformylglycinamidine (FGAM) synthase
1119	 29.97	0	1093863..1094546	+	227	71083827	purQ	SAR11_1140	-	phosphoribosylformylglycinamidine synthase I
1120	 31.69	0	1094546..1096738	+	730	71083828	purL	SAR11_1141	-	phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
1121	 32.03	0	1096740..1096970	+	76	71083829	-	SAR11_1142	-	BolA-like protein
1122	 30.63	0	1096970..1097302	+	110	71083830	grlA	SAR11_1143	-	glutaredoxin
1123	 28.21	0	1097307..1098497	-	396	71083831	cfa	SAR11_1144	-	cyclopropane-fatty-acyl-phospholipid synthase
1124	 30.58	0	1098633..1099250	-	205	71083832	rpsD	SAR11_1145	-	30S ribosomal protein S4
1125	 27.31	0	1099291..1100004	-	237	71083833	-	SAR11_1146	-	SpoU rRNA methylase family
1126	 32.77	0	1100004..1101605	-	533	71083834	-	SAR11_1147	-	alpha-isopropylmalate/homocitrate synthase family transferase
1127	 27.90	0	1101602..1102963	-	453	71083835	cysS	SAR11_1148	-	cysteinyl-tRNA synthetase
1128	 33.19	0	1103009..1103695	-	228	71083836	nadE	SAR11_1149	-	NH(3)-dependent NAD+ synthetase NadE
1129	 32.10	0	1103786..1105165	-	459	71083837	dhs	SAR11_1150	-	2-dehydro-3-deoxy-phosphoheptonate aldolase
1130	 31.08	0	1105201..1107021	-	606	71083838	glmS	SAR11_1151	-	glutamine-fructose-6-phosphate transaminase (isomerizing)
1131	 27.40	0	1107023..1107646	-	207	71083839	glmU	SAR11_1152	-	UDP-N-acetylglucosamine diphosphorylase
1132	 30.00	0	1107717..1108406	+	229	71083840	gph	SAR11_1153	-	phosphoglycolate phosphatase
1133	 32.20	0	1108457..1109959	+	500	71083841	prpD	SAR11_1154	-	2-methylcitrate dehydratase 2
1134	 30.99	0	1109959..1110855	+	298	71083842	prpB	SAR11_1155	-	hypothetical protein
1135	 31.02	0	1110855..1111979	+	374	71083843	prpC	SAR11_1156	-	methylcitrate synthase
1136	 29.51	0	1111980..1112606	-	208	71083844	-	SAR11_1157	-	methyltransferase
1137	 33.93	+1	1112611..1113624	-	337	71083845	nrdF	SAR11_1158	-	ribonucleotide-diphosphate reductase subunit beta
1138	 33.64	+1	1113630..1115567	-	645	71083846	nrdA	SAR11_1159	-	ribonucleotide-diphosphate reductase subunit alpha
1139	 30.52	0	1115724..1117178	+	484	71083847	manB	SAR11_1160	-	phosphomannomutase
1140	 32.62	0	1117162..1117443	+	93	71083848	-	SAR11_1728	-	hypothetical protein
1141	 31.04	0	1117612..1118571	-	319	71083849	sbcC	SAR11_1161	-	sbcC
1142	 29.03	0	1118568..1119218	-	216	71083850	-	SAR11_1162	-	hypothetical protein
1143	 29.89	0	1119467..1119844	-	125	71083851	-	SAR11_1163	-	hypothetical protein
1144	 31.56	0	1119848..1120411	-	187	71083852	-	SAR11_1164	-	lipoprotein
1145	 28.06	0	1120857..1121216	+	119	71083853	-	SAR11_1165	-	exonuclease
1146	 22.92	-1	1121220..1121555	-	111	71083854	-	SAR11_1166	-	hypothetical protein
1147	 30.86	0	1121545..1122273	-	242	71083855	-	SAR11_1167	-	hypothetical protein
1148	 40.68	+2	1122281..1122634	-	117	71083856	-	SAR11_1168	-	hypothetical protein
1149	 31.67	0	1122717..1123616	-	299	71083857	-	SAR11_1169	-	hypothetical protein
1150	 24.19	-1	1123935..1124120	-	61	71083858	-	SAR11_1170	-	hypothetical protein
1151	 30.36	0	1124146..1125489	-	447	71083859	ordL	SAR11_1171	-	oxidoreductase
1152	 34.06	+1	1125607..1126158	-	183	71083860	osmC	SAR11_1172	-	OsmC-like protein
1153	 34.84	+1	1126231..1127292	-	353	71083861	bhmT	SAR11_1173	-	betaine-homocysteine methyltransferase
1154	 26.67	0	1127554..1127718	-	54	71083862	-	SAR11_1730	-	hypothetical protein
1155	 34.78	+1	1127719..1127925	-	68	71083863	-	SAR11_1729	-	hypothetical protein
1156	 30.40	0	1128011..1128691	-	226	71083864	phoB	SAR11_1174	-	phosphate regulatory protein
1157	 31.90	0	1128691..1129389	-	232	71083865	phoU	SAR11_1175	-	phosphate transport regulon regulator PhoU
1158	 31.51	0	1129392..1130159	-	255	71083866	pstB	SAR11_1176	-	phosphate ABC transporter
1159	 31.67	0	1130159..1131418	-	419	71083867	pstA	SAR11_1177	-	ABC transporter
1160	 30.76	0	1131411..1132811	-	466	71083868	pstC	SAR11_1178	-	ABC transporter
1161	 35.40	+1	1132929..1133945	-	338	71083869	pstS	SAR11_1179	-	phosphate ABC transporter
1162	 27.30	0	1134061..1135104	-	347	71083870	phoR	SAR11_1180	-	phosphate regulon
1163	 34.78	+1	1135181..1136146	+	321	71083871	-	SAR11_1181	-	hypothetical protein
1164	 37.58	+2	1136254..1136418	-	54	71083872	-	SAR11_1731	-	hypothetical protein
1165	 26.78	0	1136415..1136597	-	60	71083873	-	SAR11_1182	-	hypothetical protein
1166	 32.80	0	1136605..1136979	-	124	71083874	-	SAR11_1183	-	hypothetical protein
1167	 30.77	0	1137048..1137476	-	142	71083875	cytC	SAR11_1184	-	cytochrome c
1168	 29.49	0	1137555..1138439	+	294	71083876	-	SAR11_1185	-	hypothetical protein
1169	 30.73	0	1138454..1138990	-	178	71083877	-	SAR11_1186	-	hypothetical protein
1170	 29.69	0	1139061..1140461	-	466	71083878	gdhA	SAR11_1187	-	glutamate dehydrogenase [NAD(P)] precursor
1171	 33.95	+1	1140479..1140967	-	162	71083879	-	SAR11_1188	-	hypothetical protein
1172	 33.33	0	1140964..1141257	-	97	71083880	-	SAR11_1189	-	hypothetical protein
1173	 33.89	+1	1141259..1142869	-	536	71083881	-	SAR11_1190	-	sulfate permease family protein
1174	 24.69	-1	1143032..1143436	-	134	71083882	-	SAR11_1191	-	HIT domain-containing protein
1175	 28.24	0	1143439..1144203	-	254	71083883	-	SAR11_1192	-	hypothetical protein
1176	 32.73	0	1144265..1145257	-	330	71083884	-	SAR11_1193	-	tRNA-dihydrouridine synthase A
1177	 34.25	+1	1145280..1145822	-	180	71083885	rpoZ	SAR11_1194	-	DNA-directed RNA polymerase omega chain (RNAP omega subunit)
1178	 29.20	0	1145866..1147074	-	402	71083886	-	SAR11_1195	-	membrane permease of unknown function
1179	 34.72	+1	1147089..1147955	+	288	71083887	mmsB	SAR11_1196	-	3-hydroxyisobutyrate dehydrogenase
1180	 32.00	0	1147962..1148561	+	199	71083888	-	SAR11_1197	-	flavin mononucleotide binding protein
1181	 33.33	0	1148558..1149070	-	170	71083889	-	SAR11_1198	-	transferase family protein
1182	 30.45	0	1149091..1149645	+	184	71083890	-	SAR11_1199	-	hypothetical protein
1183	 29.14	0	1149702..1150727	+	341	71083891	amsK	SAR11_1200	-	glycosyl transferase
1184	 33.07	0	1150724..1152226	-	500	71083892	tctA	SAR11_1201	-	putative tricarboxylic transport TctA
1185	 28.66	0	1152223..1152693	-	156	71083893	tctB	SAR11_1202	-	putative tricarboxylic transport tctB
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.