IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1042	 28.66	0	1028146..1028616	-	156	71083750	smpB	SAR11_1061	-	SsrA-binding protein
1043	 33.33	0	1028616..1029497	-	293	71083751	dapA	SAR11_1062	-	dihydrodipicolinate synthase
1044	 29.67	0	1029539..1031752	+	737	71083752	slt	SAR11_1063	-	putative soluble lytic murein transglycosylase precursor (slt)
1045	 35.49	+1	1031913..1033166	+	417	71083753	soxB	SAR11_1064	-	sarcosine oxidase
1046	 33.33	0	1033166..1033441	+	91	71083754	soxD	SAR11_1065	-	sarcosine oxidase delta chain
1047	 31.70	0	1033446..1036454	+	1002	71083755	soxA	SAR11_1066	-	sarcosine oxidase alpha chain
1048	 29.86	0	1036522..1037010	+	162	71083756	soxG	SAR11_1067	-	sarcosine oxidase gamma subunit
1049	 33.20	0	1037047..1037814	+	255	71083757	pheC	SAR11_1068	-	cyclohexadienyl dehydratase
1050	 27.31	0	1037915..1038595	+	226	71083758	glnP	SAR11_1069	-	ABC transporter permease component
1051	 31.82	0	1038595..1038858	+	87	71083759	-	SAR11_1071	-	GCN5-related N-acetyltransferase
1052	 28.40	0	1038898..1039383	-	161	71083760	-	SAR11_1072	-	nuclease-like protein
1053	 31.00	0	1039346..1040716	-	456	71083761	norM	SAR11_1073	-	matE efflux family protein
1054	 26.38	0	1040726..1041631	-	301	71083762	yceA	SAR11_1074	-	rhodanese domain-containing protein
1055	 28.11	0	1041631..1042281	-	216	71083763	-	SAR11_1075	-	O-methyltransferase
1056	 30.36	0	1042318..1043796	-	492	71083764	gatB	SAR11_1076	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1057	 31.41	0	1043797..1045254	-	485	71083765	gatA	SAR11_1077	-	glutamyl-tRNA(Gln) amidotransferase subunit A
1058	 28.12	0	1045254..1045541	-	95	71083766	gatC	SAR11_1078	-	Glu-tRNAGln amidotransferase C subunit
1059	 30.92	0	1045593..1046048	+	151	71083767	-	SAR11_1079	-	putative Holliday junction resolvase
1060	 30.68	0	1046091..1047032	+	313	71083768	pyrB	SAR11_1080	-	aspartate carbamoyltransferase
1061	 30.77	0	1047033..1048319	+	428	71083769	pyrC	SAR11_1081	-	dihydroorotase
1062	 28.30	0	1048322..1048897	+	191	71083770	ygiH	SAR11_1082	-	hypothetical protein
1063	 31.06	0	1048935..1051526	+	863	71083771	topA	SAR11_1083	-	DNA topoisomerase I
1064	 24.09	-1	1051523..1051825	+	100	71083772	-	SAR11_1084	-	hypothetical protein
1065	 32.03	0	1051828..1052289	+	153	71083773	-	SAR11_1085	-	endoribonuclease L-PSP
1066	 26.25	0	1052286..1053584	-	432	71083774	ugd	SAR11_1086	-	udpglucose 6-dehydrogenase
1067	 25.25	0	1053581..1054396	-	271	71083775	galU	SAR11_1087	-	UTP-glucose-1-phosphate uridylyltransferase pXO1-94
1068	 22.18	-1	1054401..1055243	+	280	71083776	panC	SAR11_1088	-	pantoate-beta-alanine ligase
1069	 29.99	0	1055240..1056613	-	457	71083777	mgtE	SAR11_1089	-	magnesium transport protein mgtE
1070	 25.60	0	1056675..1057295	+	206	71083778	rfaL	SAR11_1090	-	lipoate-protein ligase B
1071	 27.65	0	1057276..1058190	-	304	71083779	rluC	SAR11_1091	-	ribosomal large subunit pseudouridine synthase C
1072	 30.14	0	1058215..1058652	-	145	71083780	rplQ	SAR11_1092	-	ribosomal protein L17
1073	 31.10	0	1058652..1059680	-	342	71083781	rpoA	SAR11_1093	-	DNA-directed RNA polymerase subunit alpha
1074	 31.79	0	1059684..1060136	-	150	71083782	rpsK	SAR11_1094	-	30S ribosomal protein S11
1075	 30.73	0	1060144..1060527	-	127	71083783	rpsM	SAR11_1095	-	30S ribosomal protein S13
1076	 27.88	0	1060583..1061224	-	213	71083784	adk	SAR11_1096	-	adenylate kinase
1077	 31.62	0	1061229..1062509	-	426	71083785	secY	SAR11_1097	-	preprotein translocase SECY subunit
1078	 29.00	0	1062520..1062981	-	153	71083786	rplO	SAR11_1099	-	50S ribosomal protein L15
1079	 34.31	+1	1062981..1063493	-	170	71083787	rpsE	SAR11_1100	-	30S ribosomal protein S5
1080	 27.45	0	1063496..1063852	-	118	71083788	rplR	SAR11_1101	-	ribosomal protein L18
1081	 32.04	0	1063852..1064391	-	179	71083789	rplF	SAR11_1102	-	ribosomal protein L6
1082	 30.81	0	1064391..1064786	-	131	71083790	rpsH	SAR11_1103	-	30S ribosomal protein S8
1083	 31.37	0	1064797..1065102	-	101	71083791	rpsN	SAR11_1104	-	30S ribosomal protein S14
1084	 28.83	0	1065105..1065659	-	184	71083792	rplE	SAR11_1105	-	50S ribosomal protein L5
1085	 28.51	0	1065659..1065907	-	82	71083793	rplX	SAR11_1106	-	50S ribosomal protein L24
1086	 33.33	0	1065908..1066276	-	122	71083794	rplN	SAR11_1107	-	50S ribosomal protein L14
1087	 27.00	0	1066273..1066509	-	78	71083795	rpsQ	SAR11_1108	-	ribosomal protein S17
1088	 20.31	-2	1066502..1066693	-	63	71083796	rpmC	SAR11_1109	-	ribosomal L29 protein
1089	 35.52	+1	1066695..1067105	-	136	71083797	rplP	SAR11_1110	-	50S ribosomal protein L16
1090	 30.25	0	1067108..1067788	-	226	71083798	rpsC	SAR11_1111	-	30S ribosomal protein S3
1091	 28.57	0	1067772..1068170	-	132	71083799	rplV	SAR11_1112	-	50S ribosomal protein L22
1092	 30.27	0	1068173..1068466	-	97	71083800	rpsS	SAR11_1113	-	30S ribosomal protein S19
1093	 35.58	+1	1068466..1069311	-	281	71083801	rplB	SAR11_1114	-	50S ribosomal protein L2
1094	 25.85	0	1069314..1069607	-	97	71083802	rplW	SAR11_1115	-	ribosomal protein L23
1095	 25.32	0	1069609..1070232	-	207	71083803	rplD	SAR11_1116	-	ribosomal protein L4
1096	 30.10	0	1070232..1070942	-	236	71083804	rplC	SAR11_1117	-	50S ribosomal protein L3
1097	 30.42	0	1070945..1071253	-	102	71083805	rpsJ	SAR11_1118	-	30S ribosomal protein S10
1098	 34.58	+1	1071259..1073337	-	692	71083806	fusA	SAR11_1119	-	translation elongation factor EF-G
1099	 30.36	0	1073344..1073814	-	156	71083807	rpsG	SAR11_1120	-	30S ribosomal protein S7
1100	 34.68	+1	1073817..1074188	-	123	71083808	rpsL	SAR11_1121	-	30S ribosomal protein S12
1101	 32.66	0	1074360..1078529	-	1389	71083809	rpoC	SAR11_1122	-	DNA-directed RNA polymerase beta prime chain
1102	 31.38	0	1078532..1082623	-	1363	71083810	rpoB	SAR11_1123	-	DNA-directed RNA polymerase
1103	 37.98	+2	1082679..1083044	-	121	71083811	rplL	SAR11_1124	-	50S ribosomal protein L31
1104	 33.13	0	1083072..1083572	-	166	71083812	rplJ	SAR11_1125	-	50S ribosomal protein L10P
1105	 30.00	0	1083578..1084267	-	229	71083813	rplA	SAR11_1126	-	ribosomal protein L1
1106	 35.21	+1	1084267..1084692	-	141	71083814	rplK	SAR11_1127	-	ribosomal protein L11
1107	 32.02	0	1084692..1085222	-	176	71083815	nusG	SAR11_1128	-	transcription antitermination protein NusG
1108	 31.25	0	1085222..1085413	-	63	71083816	secE	SAR11_1129	-	protein secE/sec61-gamma protein
1109	 36.36	+1	1085516..1086706	-	396	71083817	tufB	SAR11_1130	-	elongation factor Tu
1110	 29.30	0	1087091..1087834	+	247	71083818	-	SAR11_1131	-	SpoU rRNA methylase family
1111	 25.38	0	1087948..1088727	-	259	71083819	ppnK	SAR11_1132	-	inorganic polyphosphate/ATP-NAD kinase
1112	 23.88	-1	1088896..1089297	-	133	71083820	-	SAR11_1133	-	hypothetical protein
1113	 30.53	0	1089302..1090051	-	249	71083821	-	SAR11_1134	-	hypothetical protein
1114	 27.47	0	1090073..1090771	+	232	71083822	sfsA	SAR11_1135	-	sugar fermentation stimulation protein
1115	 33.07	0	1090764..1091534	+	256	71083823	map	SAR11_1136	-	methionine aminopeptidase
1116	 30.24	0	1091538..1092830	+	430	71083824	purB	SAR11_1137	-	adenylosuccinate lyase
1117	 27.59	0	1092830..1093612	+	260	71083825	purC	SAR11_1138	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1118	 28.40	0	1093614..1093856	+	80	71083826	-	SAR11_1139	-	phosphoribosylformylglycinamidine (FGAM) synthase
1119	 29.97	0	1093863..1094546	+	227	71083827	purQ	SAR11_1140	-	phosphoribosylformylglycinamidine synthase I
1120	 31.69	0	1094546..1096738	+	730	71083828	purL	SAR11_1141	-	phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
1121	 32.03	0	1096740..1096970	+	76	71083829	-	SAR11_1142	-	BolA-like protein
1122	 30.63	0	1096970..1097302	+	110	71083830	grlA	SAR11_1143	-	glutaredoxin
1123	 28.21	0	1097307..1098497	-	396	71083831	cfa	SAR11_1144	-	cyclopropane-fatty-acyl-phospholipid synthase
1124	 30.58	0	1098633..1099250	-	205	71083832	rpsD	SAR11_1145	-	30S ribosomal protein S4
1125	 27.31	0	1099291..1100004	-	237	71083833	-	SAR11_1146	-	SpoU rRNA methylase family
1126	 32.77	0	1100004..1101605	-	533	71083834	-	SAR11_1147	-	alpha-isopropylmalate/homocitrate synthase family transferase
1127	 27.90	0	1101602..1102963	-	453	71083835	cysS	SAR11_1148	-	cysteinyl-tRNA synthetase
1128	 33.19	0	1103009..1103695	-	228	71083836	nadE	SAR11_1149	-	NH(3)-dependent NAD+ synthetase NadE
1129	 32.10	0	1103786..1105165	-	459	71083837	dhs	SAR11_1150	-	2-dehydro-3-deoxy-phosphoheptonate aldolase
1130	 31.08	0	1105201..1107021	-	606	71083838	glmS	SAR11_1151	-	glutamine-fructose-6-phosphate transaminase (isomerizing)
1131	 27.40	0	1107023..1107646	-	207	71083839	glmU	SAR11_1152	-	UDP-N-acetylglucosamine diphosphorylase
1132	 30.00	0	1107717..1108406	+	229	71083840	gph	SAR11_1153	-	phosphoglycolate phosphatase
1133	 32.20	0	1108457..1109959	+	500	71083841	prpD	SAR11_1154	-	2-methylcitrate dehydratase 2
1134	 30.99	0	1109959..1110855	+	298	71083842	prpB	SAR11_1155	-	hypothetical protein
1135	 31.02	0	1110855..1111979	+	374	71083843	prpC	SAR11_1156	-	methylcitrate synthase
1136	 29.51	0	1111980..1112606	-	208	71083844	-	SAR11_1157	-	methyltransferase
1137	 33.93	+1	1112611..1113624	-	337	71083845	nrdF	SAR11_1158	-	ribonucleotide-diphosphate reductase subunit beta
1138	 33.64	+1	1113630..1115567	-	645	71083846	nrdA	SAR11_1159	-	ribonucleotide-diphosphate reductase subunit alpha
1139	 30.52	0	1115724..1117178	+	484	71083847	manB	SAR11_1160	-	phosphomannomutase
1140	 32.62	0	1117162..1117443	+	93	71083848	-	SAR11_1728	-	hypothetical protein
1141	 31.04	0	1117612..1118571	-	319	71083849	sbcC	SAR11_1161	-	sbcC
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.