version 1.0
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759 1354 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 60 31.21 0 70495..72051 - 518 71082769 pilQ SAR11_0060 - Type II secretion PilQ 61 27.81 0 72054..72560 - 168 71082770 pilP SAR11_0061 - type 4 fimbrial biogenesis protein PilP 62 28.32 0 72547..73224 - 225 71082771 pilO SAR11_0062 - type 4 fimbrial biogenesis protein PilO 63 27.16 0 73227..75770 - 847 71082772 pilMN SAR11_0063 - Type II secretion 64 28.21 0 77115..78461 - 448 71082773 rsbU SAR11_0064 - sigma factor sigB regulation protein 65 26.27 0 78561..79325 + 254 71082774 pild SAR11_0065 - Type II secretion PilD 66 22.78 -1 79386..80105 + 239 71082775 fimc SAR11_0067 - membrane-bound pili assembly protein Fimc 67 37.25 +1 80345..84916 - 1523 71082776 pilY1 SAR11_0068 - Type II secretion PilY1 68 30.86 0 85064..85588 - 174 71082777 - SAR11_0069 - pilX-type protein 69 33.33 0 85664..86368 - 234 71082778 - SAR11_0070 - type IV pilus assembly protein PilW 70 31.35 0 86437..87291 - 284 71082779 - SAR11_0071 - type IV pilin secretion protein 71 29.95 0 87366..88016 - 216 71082780 - SAR11_0072 - putative pilV-like pilin protein 72 35.67 +1 88021..88746 - 241 71082781 - SAR11_0073 - pilin protein PilU 73 33.63 +1 88721..89734 - 337 71082782 pilT SAR11_0074 - Type II secretion PilT 74 32.58 0 89886..90548 - 220 71082783 - SAR11_0075 - hypothetical protein 75 26.46 0 90548..91492 - 314 71082784 - SAR11_0076 - nucleoside-diphosphate-sugar epimerase 76 35.03 +1 91514..92458 + 314 71082785 trxB SAR11_0077 - thioredoxin reductase 77 32.16 0 92500..93519 + 339 71082786 - SAR11_0078 - NAD dependent epimerase/dehydratase protein 78 32.44 0 93511..93960 - 149 71082787 ytoQ SAR11_0079 - hypothetical protein 79 33.00 0 93960..95159 - 399 71082788 aatA SAR11_0080 - aspartate transaminase 80 33.33 0 95195..97366 + 723 71082789 uvrB SAR11_0081 - excinuclease ABC subunit B 81 28.69 0 97348..98100 + 250 71082790 - SAR11_0082 - short-chain dehydrogenase 82 22.30 -1 98097..98522 + 141 71082791 folB SAR11_0083 - dihydroneopterin aldolase 83 30.01 0 98509..100344 + 611 71082792 uvrC SAR11_0084 - excinuclease ABC subunit C 84 29.74 0 100347..100931 + 194 71082793 pgsA SAR11_0085 - CDP-diacylglycerol 85 32.99 0 100928..101809 - 293 71082794 ilvE SAR11_0086 - branched-chain amino acid aminotransferase 86 25.34 0 101880..102317 + 145 71082795 petP SAR11_0087 - transcriptional regulator 87 25.52 0 102310..102987 + 225 71082796 petR SAR11_0088 - two-component system 88 27.95 0 102968..104287 + 439 71082797 envZ SAR11_0089 - osmolarity sensor protein envZ 89 19.61 -2 104265..104519 - 84 71082798 - SAR11_0090 - hypothetical protein 90 28.79 0 104566..105336 + 256 71082799 lgt SAR11_0091 - prolipoprotein diacylglyceryl transferase 91 25.67 0 105326..106369 + 347 71082800 cdfA SAR11_0092 - cyclopropane-fatty-acyl-phospholipid synthase 92 21.43 -1 106800..107135 + 111 71082801 - SAR11_0093 - hypothetical protein 93 30.44 0 107142..108074 + 310 71082802 prsA SAR11_0094 - ribose-phosphate pyrophosphokinase 94 33.77 +1 108119..108805 + 228 71082803 rplY SAR11_0095 - ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 95 28.16 0 108851..109411 + 186 71082804 pth SAR11_0096 - peptidyl-tRNA hydrolase 96 30.54 0 109411..110484 + 357 71082805 - SAR11_0097 - translation-associated GTPase 97 34.10 +1 110461..111240 - 259 71082806 fbcH SAR11_0098 - ubiquinol-cytochrome-c reductase 98 34.68 +1 111245..112504 - 419 71082807 petB SAR11_0099 - ubiquinol-cytochrome-c reductase 99 37.25 +1 112514..113023 - 169 71082808 petA SAR11_0100 - cytochrome b6-f complex iron-sulfur subunit 100 28.35 0 113110..113571 + 153 71082809 spoU SAR11_0101 - rRNA methylase 101 29.35 0 113571..114398 + 275 71082810 hemF SAR11_0102 - coproporphyrinogen III oxidase 102 30.61 0 114400..114876 + 158 71082811 greA SAR11_0103 - transcription elongation factor 103 25.33 0 114873..116147 - 424 71082812 pcnB SAR11_0104 - Poly(A) polymerase (PAP) 104 25.53 0 116257..117102 - 281 71082813 ispE SAR11_0105 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 105 24.67 -1 117106..118791 - 561 71082814 - SAR11_0106 - TPR repeat-containing protein 106 26.78 0 118803..119534 + 243 71082815 - SAR11_0107 - DNA-directed DNA polymerase 107 28.16 0 119534..120094 + 186 71082816 rnhB SAR11_0108 - ribonuclease HII (RNase HII) 108 30.44 0 120216..121286 + 356 71082817 babIM SAR11_0109 - site-specific DNA methyltransferase 109 26.56 0 121283..122434 - 383 71082818 nah SAR11_0110 - salicylate 1-monooxygenase 110 25.18 0 122434..123414 - 326 71082819 mutY SAR11_0111 - A/G-specific adenine glycosylase 111 25.97 0 123415..123903 + 162 71082820 - SAR11_0112 - hypothetical protein 112 27.71 0 123975..124490 + 171 71082821 - SAR11_0113 - DsbA-like protein 113 30.19 0 124499..127072 + 857 71082822 smc SAR11_0114 - SMC family chromosome segregation protein 114 32.97 0 127081..127356 + 91 71082823 - SAR11_0115 - transmembrane protein 115 33.06 0 127369..128103 + 244 71082824 atpB SAR11_0116 - F0F1 ATP synthase subunit A 116 39.47 +2 128123..128350 + 75 71082825 atpE SAR11_0117 - F0F1 ATP synthase subunit C 117 30.93 0 128407..128946 + 179 71082826 - SAR11_0118 - H+-transporting two-sector ATPase (subunit b') 118 25.10 -1 128936..129433 + 165 71082827 atpF SAR11_0119 - H+-transporting two-sector ATPase (subunit b) 119 30.18 0 129473..130930 + 485 71082828 crtI SAR11_0120 - phytoene dehydrogenase 120 24.06 -1 130930..131781 + 283 71082829 crtB SAR11_0121 - phytoene synthase 121 25.58 0 131813..132844 + 343 71082830 crtY SAR11_0122 - lycopene cyclase 122 21.94 -1 132834..133772 + 312 71082831 - SAR11_0123 - transmembrane protein 123 31.64 0 133762..134706 + 314 71082832 lytB SAR11_0124 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 124 22.39 -1 134707..135675 + 322 71082833 thrB SAR11_0125 - homoserine kinase 125 31.22 0 135675..136100 + 141 71082834 rnhA SAR11_0126 - ribonuclease H (RNase H) 126 30.25 0 136092..136577 - 161 71082835 pmpA SAR11_0127 - peroxisomal membrane protein a (pmp20) 127 27.10 0 136574..137953 - 459 71082836 thrC SAR11_0128 - threonine synthase 128 23.85 -1 137954..138607 - 217 71082837 surf1 SAR11_0129 - surfeit locus protein 1 129 35.23 +1 138618..139406 - 262 71082838 coxC SAR11_0130 - cytochrome-c oxidase 130 30.35 0 139409..139945 - 178 71082839 ctaG SAR11_0131 - cytochrome C oxidase assembly protein 131 25.40 0 139945..140070 - 41 71082840 - SAR11_0132 - serine protease inhibitor sgti 132 30.80 0 140067..140933 - 288 71082841 ctaB SAR11_0133 - cytochrome c oxidase assembly factor 133 35.66 +1 141011..142645 - 544 71082842 cox1 SAR11_0134 - cytochrome-c oxidase 134 32.97 0 142648..143463 - 271 71082843 coxB SAR11_0135 - cytochrome c oxidase polypeptide II (cytochrome aa3 subunit 2) 135 26.35 0 143525..144226 - 233 71082844 - SAR11_0136 - hypothetical protein 136 27.75 0 144244..144906 + 220 71082845 dhlB SAR11_0137 - (S)-2-haloacid dehalogenase 137 30.00 0 144899..145258 - 119 71082846 - SAR11_0138 - transcriptional regulator 138 37.55 +1 145353..145589 + 78 71082847 - SAR11_0139 - putative glutamate synthetas 139 29.13 0 145619..145999 + 126 71082848 - SAR11_0140 - DoxD-like family protein 140 34.83 +1 146096..147634 + 512 71082849 - SAR11_0141 - ferredoxin-dependent glutamate synthase peptide 141 33.93 +1 147644..148483 + 279 71082850 - SAR11_0142 - pirin 142 33.23 0 148483..149457 + 324 71082851 qor SAR11_0143 - quinone oxidoreductase 143 29.88 0 149454..149858 - 134 71082852 - SAR11_0144 - hypothetical protein 144 26.97 0 149911..150774 + 287 71082853 ubiA SAR11_0145 - 4-hydroxybenzoate octaprenyltransferase 145 28.05 0 150774..152513 + 579 71082854 - SAR11_0147 - ABC transporter ATP-binding protein 146 23.91 -1 152513..153775 + 420 71082855 kdtA SAR11_0148 - 3-deoxy-D-manno-octulosonic-acid transferase 147 24.55 -1 153756..154700 + 314 71082856 lpxK SAR11_0149 - tetraacyldisaccharide 4'-kinase 148 24.39 -1 154687..155547 + 286 71082857 htrB SAR11_0151 - lipid A biosynthesis lauroyl acyltransferase 149 24.87 -1 155552..155740 - 62 71082858 - SAR11_0152 - hypothetical protein 150 29.15 0 155762..157027 + 421 71082859 purD SAR11_0153 - phosphoribosylamine--glycine ligase 151 23.81 -1 157024..157590 + 188 71082860 - SAR11_0154 - N6-adenine-specific methylase 152 22.48 -1 157582..158724 - 380 71082861 pgi SAR11_0155 - glucose-6-phosphate isomerase 153 26.25 0 158728..159066 - 112 71082862 - SAR11_0156 - hypothetical protein 154 24.35 -1 159167..159667 - 166 71082863 lspA SAR11_0157 - lipoprotein signal peptidase 155 30.65 0 159680..162397 - 905 71082864 ileS SAR11_0158 - isoleucyl-tRNA synthetase 156 23.64 -1 162399..163316 - 305 71082865 ribF SAR11_0159 - riboflavin biosynthesis protein 157 27.11 0 163320..164138 - 272 71082866 - SAR11_0160 - haloacid dehalogenase-like hydrolase 158 35.40 +1 164262..164552 + 96 71082867 groES SAR11_0161 - 10 kDa chaperonin 159 37.42 +1 164576..166240 + 554 71082868 groEL SAR11_0162 - 60 kDa chaperonin 29.30 MEAN 4.13 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.