IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
995	 23.84	-1	990598..992703	+	701	71083703	-	SAR11_1012	-	glycosyl transferase group 1
996	 22.36	-1	992704..993414	+	236	71083704	yxkH	SAR11_1013	-	polysaccharide deacetylase-like protein
997	 25.77	0	993416..994618	+	400	71083705	-	SAR11_1014	-	putative pyridoxamine 5-phosphate-dependent dehydrase
998	 22.63	-1	994615..995427	+	270	71083706	-	SAR11_1015	-	NAD dependent epimerase/dehydratase f
999	 21.78	-1	995434..996108	+	224	71083707	-	SAR11_1016	-	hypothetical protein
1000	 21.91	-1	996113..997066	+	317	71083708	-	SAR11_1017	-	hypothetical protein
1001	 20.16	-2	997089..997862	-	257	71083709	-	SAR11_1018	-	methyltransferase FkbM
1002	 29.68	0	997872..998828	-	318	71083710	xerD	SAR11_1019	-	integrase/recombinase xerD-like protein
1003	 33.78	+1	999127..999570	+	147	71083711	-	SAR11_1020	-	acetyltransferase
1004	 36.81	+1	999542..999829	+	95	71083712	ada	SAR11_1021	-	6-O-methylguanine DNA methyltransferase
1005	 34.44	+1	1000426..1001238	-	270	71083713	-	SAR11_1022	-	DMT family permease
1006	 28.90	0	1001292..1002194	-	300	71083714	-	SAR11_1023	-	hypothetical protein
1007	 27.76	0	1002194..1003486	-	430	71083715	hom	SAR11_1025	-	homoserine dehydrogenase
1008	 25.78	0	1003487..1003711	-	74	71083716	-	SAR11_1026	-	hypothetical protein
1009	 26.00	0	1003708..1004730	-	340	71083717	argC	SAR11_1027	-	N-acetyl-gamma-glutamyl-phosphate reductase
1010	 34.22	+1	1004766..1005215	-	149	71083718	rpsI	SAR11_1028	-	ribosomal protein S9
1011	 29.87	0	1005217..1005678	-	153	71083719	rplM	SAR11_1029	-	50S ribosomal protein L13
1012	 35.29	+1	1005891..1007219	+	442	71083720	metY	SAR11_1030	-	O-acetylhomoserine (thiol)-lyase
1013	 25.82	0	1007212..1008222	-	336	71083721	coxW	SAR11_1031	-	cytochrome c oxidase assembly protein (isoform 1)
1014	 20.27	-2	1008265..1008555	+	96	71083722	-	SAR11_1032	-	chorismate mutase II
1015	 32.29	0	1008558..1008749	-	63	71083723	rpmG	SAR11_1033	-	ribosomal protein L33
1016	 22.22	-1	1008751..1009128	-	125	71083724	merR	SAR11_1034	-	transcription regulator
1017	 22.01	-1	1009118..1009426	-	102	71083725	himA	SAR11_1035	-	DNA-binding protein
1018	 28.64	0	1009420..1010421	-	333	71083726	plsX	SAR11_1036	-	fatty acid/phospholipid synthesis protein PlsX
1019	 36.07	+1	1010436..1010618	-	60	71083727	rpmF	SAR11_1037	-	50S ribosomal protein L32
1020	 21.79	-1	1010626..1011093	-	155	71083728	-	SAR11_1038	-	hypothetical protein
1021	 25.38	0	1011092..1011556	+	154	71083729	-	SAR11_1039	-	hypothetical protein
1022	 35.38	+1	1011564..1013669	-	701	71083730	hppA	SAR11_1040	-	membrane-bound proton-translocating pyrophosphatase
1023	 23.33	-1	1013756..1014715	-	319	71083731	thiL	SAR11_1041	-	thiamine-phosphate kinase
1024	 25.68	0	1014708..1015112	-	134	71083732	nusB	SAR11_1042	-	antitermination protein NusB
1025	 29.46	0	1015115..1015501	-	128	71083733	ribH	SAR11_1043	-	riboflavin synthase
1026	 26.07	0	1015501..1016601	-	366	71083734	ribA	SAR11_1044	-	GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase
1027	 24.07	-1	1016588..1017181	-	197	71083735	ribB	SAR11_1045	-	riboflavin synthase subunit alpha
1028	 24.24	-1	1017186..1018241	-	351	71083736	ribD	SAR11_1046	-	5-amino-6-(5-phosphoribosylamino)uracil reductase
1029	 31.37	0	1018267..1018725	-	152	71083737	ybaD	SAR11_1047	-	transcriptional regulator NrdR
1030	 33.18	0	1018725..1020035	-	436	71083738	glyA	SAR11_1048	-	glycine hydroxymethyltransferase
1031	 29.11	0	1020038..1020463	-	141	71083739	rpiB	SAR11_1049	-	ribose-5-phosphate isomerase
1032	 32.71	0	1020465..1021106	-	213	71083740	-	SAR11_1050	-	hypothetical protein
1033	 30.71	0	1021179..1022168	+	329	71083741	hemB	SAR11_1051	-	delta-aminolevulinic acid dehydratase
1034	 25.70	0	1022169..1022849	-	226	71083742	recO	SAR11_1052	-	recombination protein O
1035	 26.16	0	1022846..1023514	-	222	71083743	rnc	SAR11_1053	-	ribonuclease III
1036	 25.99	0	1023514..1024248	-	244	71083744	sipF	SAR11_1054	-	signal peptidase I
1037	 23.51	-1	1024245..1024631	-	128	71083745	acpS	SAR11_1055	-	Holo-[acyl-carrier protein] synthase (Holo-ACP synthase)
1038	 25.69	0	1024634..1025353	-	239	71083746	pdxJ	SAR11_1056	-	pyridoxal phosphate biosynthetic protein PdxJ
1039	 25.51	0	1025350..1025937	-	195	71083747	pyrE	SAR11_1057	-	orotate phosphoribosyltransferase
1040	 29.10	0	1025894..1027639	-	581	71083748	-	SAR11_1058	-	GTP pyrophosphokinase
1041	 23.95	-1	1027659..1028180	-	173	71083749	folK	SAR11_1059	-	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
1042	 28.66	0	1028146..1028616	-	156	71083750	smpB	SAR11_1061	-	SsrA-binding protein
1043	 33.33	0	1028616..1029497	-	293	71083751	dapA	SAR11_1062	-	dihydrodipicolinate synthase
1044	 29.67	0	1029539..1031752	+	737	71083752	slt	SAR11_1063	-	putative soluble lytic murein transglycosylase precursor (slt)
1045	 35.49	+1	1031913..1033166	+	417	71083753	soxB	SAR11_1064	-	sarcosine oxidase
1046	 33.33	0	1033166..1033441	+	91	71083754	soxD	SAR11_1065	-	sarcosine oxidase delta chain
1047	 31.70	0	1033446..1036454	+	1002	71083755	soxA	SAR11_1066	-	sarcosine oxidase alpha chain
1048	 29.86	0	1036522..1037010	+	162	71083756	soxG	SAR11_1067	-	sarcosine oxidase gamma subunit
1049	 33.20	0	1037047..1037814	+	255	71083757	pheC	SAR11_1068	-	cyclohexadienyl dehydratase
1050	 27.31	0	1037915..1038595	+	226	71083758	glnP	SAR11_1069	-	ABC transporter permease component
1051	 31.82	0	1038595..1038858	+	87	71083759	-	SAR11_1071	-	GCN5-related N-acetyltransferase
1052	 28.40	0	1038898..1039383	-	161	71083760	-	SAR11_1072	-	nuclease-like protein
1053	 31.00	0	1039346..1040716	-	456	71083761	norM	SAR11_1073	-	matE efflux family protein
1054	 26.38	0	1040726..1041631	-	301	71083762	yceA	SAR11_1074	-	rhodanese domain-containing protein
1055	 28.11	0	1041631..1042281	-	216	71083763	-	SAR11_1075	-	O-methyltransferase
1056	 30.36	0	1042318..1043796	-	492	71083764	gatB	SAR11_1076	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1057	 31.41	0	1043797..1045254	-	485	71083765	gatA	SAR11_1077	-	glutamyl-tRNA(Gln) amidotransferase subunit A
1058	 28.12	0	1045254..1045541	-	95	71083766	gatC	SAR11_1078	-	Glu-tRNAGln amidotransferase C subunit
1059	 30.92	0	1045593..1046048	+	151	71083767	-	SAR11_1079	-	putative Holliday junction resolvase
1060	 30.68	0	1046091..1047032	+	313	71083768	pyrB	SAR11_1080	-	aspartate carbamoyltransferase
1061	 30.77	0	1047033..1048319	+	428	71083769	pyrC	SAR11_1081	-	dihydroorotase
1062	 28.30	0	1048322..1048897	+	191	71083770	ygiH	SAR11_1082	-	hypothetical protein
1063	 31.06	0	1048935..1051526	+	863	71083771	topA	SAR11_1083	-	DNA topoisomerase I
1064	 24.09	-1	1051523..1051825	+	100	71083772	-	SAR11_1084	-	hypothetical protein
1065	 32.03	0	1051828..1052289	+	153	71083773	-	SAR11_1085	-	endoribonuclease L-PSP
1066	 26.25	0	1052286..1053584	-	432	71083774	ugd	SAR11_1086	-	udpglucose 6-dehydrogenase
1067	 25.25	0	1053581..1054396	-	271	71083775	galU	SAR11_1087	-	UTP-glucose-1-phosphate uridylyltransferase pXO1-94
1068	 22.18	-1	1054401..1055243	+	280	71083776	panC	SAR11_1088	-	pantoate-beta-alanine ligase
1069	 29.99	0	1055240..1056613	-	457	71083777	mgtE	SAR11_1089	-	magnesium transport protein mgtE
1070	 25.60	0	1056675..1057295	+	206	71083778	rfaL	SAR11_1090	-	lipoate-protein ligase B
1071	 27.65	0	1057276..1058190	-	304	71083779	rluC	SAR11_1091	-	ribosomal large subunit pseudouridine synthase C
1072	 30.14	0	1058215..1058652	-	145	71083780	rplQ	SAR11_1092	-	ribosomal protein L17
1073	 31.10	0	1058652..1059680	-	342	71083781	rpoA	SAR11_1093	-	DNA-directed RNA polymerase subunit alpha
1074	 31.79	0	1059684..1060136	-	150	71083782	rpsK	SAR11_1094	-	30S ribosomal protein S11
1075	 30.73	0	1060144..1060527	-	127	71083783	rpsM	SAR11_1095	-	30S ribosomal protein S13
1076	 27.88	0	1060583..1061224	-	213	71083784	adk	SAR11_1096	-	adenylate kinase
1077	 31.62	0	1061229..1062509	-	426	71083785	secY	SAR11_1097	-	preprotein translocase SECY subunit
1078	 29.00	0	1062520..1062981	-	153	71083786	rplO	SAR11_1099	-	50S ribosomal protein L15
1079	 34.31	+1	1062981..1063493	-	170	71083787	rpsE	SAR11_1100	-	30S ribosomal protein S5
1080	 27.45	0	1063496..1063852	-	118	71083788	rplR	SAR11_1101	-	ribosomal protein L18
1081	 32.04	0	1063852..1064391	-	179	71083789	rplF	SAR11_1102	-	ribosomal protein L6
1082	 30.81	0	1064391..1064786	-	131	71083790	rpsH	SAR11_1103	-	30S ribosomal protein S8
1083	 31.37	0	1064797..1065102	-	101	71083791	rpsN	SAR11_1104	-	30S ribosomal protein S14
1084	 28.83	0	1065105..1065659	-	184	71083792	rplE	SAR11_1105	-	50S ribosomal protein L5
1085	 28.51	0	1065659..1065907	-	82	71083793	rplX	SAR11_1106	-	50S ribosomal protein L24
1086	 33.33	0	1065908..1066276	-	122	71083794	rplN	SAR11_1107	-	50S ribosomal protein L14
1087	 27.00	0	1066273..1066509	-	78	71083795	rpsQ	SAR11_1108	-	ribosomal protein S17
1088	 20.31	-2	1066502..1066693	-	63	71083796	rpmC	SAR11_1109	-	ribosomal L29 protein
1089	 35.52	+1	1066695..1067105	-	136	71083797	rplP	SAR11_1110	-	50S ribosomal protein L16
1090	 30.25	0	1067108..1067788	-	226	71083798	rpsC	SAR11_1111	-	30S ribosomal protein S3
1091	 28.57	0	1067772..1068170	-	132	71083799	rplV	SAR11_1112	-	50S ribosomal protein L22
1092	 30.27	0	1068173..1068466	-	97	71083800	rpsS	SAR11_1113	-	30S ribosomal protein S19
1093	 35.58	+1	1068466..1069311	-	281	71083801	rplB	SAR11_1114	-	50S ribosomal protein L2
1094	 25.85	0	1069314..1069607	-	97	71083802	rplW	SAR11_1115	-	ribosomal protein L23
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.