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Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759 1354 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 964 29.60 0 959909..961462 + 517 71083672 secD SAR11_0980 - protein-export membrane protein SECD 965 26.80 0 961462..962349 + 295 71083673 secF SAR11_0981 - preprotein translocase chain secF 966 33.50 +1 962352..962945 - 197 71083674 - SAR11_0982 - hypothetical protein 967 32.08 0 962973..965852 - 959 71083675 uvrA SAR11_0983 - excinuclease ABC chain A 968 34.20 +1 965942..966400 + 152 71083676 ssb SAR11_0984 - single-strand binding protein (ssb) 969 31.22 0 966406..968955 + 849 71083677 gyrA SAR11_0985 - DNA gyrase subunit A 970 23.23 -1 968955..969449 + 164 71083678 kdtB SAR11_0986 - pantetheine-phosphate adenylyltransferase 971 33.33 0 969517..969996 + 159 71083679 ppiB SAR11_0987 - peptidylprolyl isomerase 972 30.73 0 970015..971127 + 370 71083680 tgt SAR11_0988 - queuine tRNA-ribosyltransferase 973 16.30 -2 971129..971263 - 44 71083681 - SAR11_0989 - hypothetical protein 974 34.36 +1 971424..972200 - 258 71083682 - SAR11_0991 - M48 family peptidase 975 28.29 0 972375..972989 + 204 71083683 - SAR11_0992 - hypothetical protein 976 26.32 0 972986..975037 - 683 71083684 recG SAR11_0993 - ATP-dependent DNA helicase recG 977 25.47 0 975062..975328 + 88 71083685 - SAR11_0994 - hypothetical protein 978 27.55 0 975511..976392 + 293 71083686 rarD SAR11_0995 - rarD protein 979 26.65 0 976379..977380 + 333 71083687 mltB SAR11_0996 - membrane-bound lytic transglycolase-related protein 980 22.13 -1 977370..978128 + 252 71083688 - SAR11_0997 - hypothetical protein 981 30.82 0 978121..979272 + 383 71083689 dacC SAR11_0998 - serine-type D-Ala-D-Ala carboxypeptidase 982 21.08 -1 979265..979876 + 203 71083690 tmk SAR11_0999 - thymidylate kinase (dTMP kinase) 983 20.90 -2 979881..980813 + 310 71083691 holB SAR11_1000 - DNA polymerase III 984 28.02 0 980814..982355 + 513 71083692 metS SAR11_1001 - methionyl-tRNA synthetase 985 26.01 0 982348..983112 + 254 71083693 - SAR11_1002 - TatD related DNase 986 25.26 0 983112..983891 + 259 71083694 - SAR11_1003 - metallo-beta-lactamase family protein 987 26.51 0 983880..984392 - 170 71083695 bsaA SAR11_1004 - glutathione peroxidase 988 31.07 0 984438..985544 - 368 71083696 nhaA SAR11_1005 - Na+/H+ antiporter 1 989 25.93 0 985615..986127 - 170 71083697 - SAR11_1006 - hypothetical protein 990 25.18 0 986302..986583 + 93 71083698 ndufs4 SAR11_1007 - ETC complex I subunit region 991 32.83 0 986586..987578 + 330 71083699 sbmA SAR11_1008 - putative transporter 992 31.54 0 987578..988525 + 315 71083700 glpX SAR11_1009 - fructose 1,6-bisphosphatase II 993 23.66 -1 988522..990216 + 564 71083701 recJ SAR11_1010 - single-stranded-DNA-specific exonuclease RecJ 994 23.02 -1 990347..990598 + 83 71083702 - SAR11_1011 - excinuclease ABC subunit C 995 23.84 -1 990598..992703 + 701 71083703 - SAR11_1012 - glycosyl transferase group 1 996 22.36 -1 992704..993414 + 236 71083704 yxkH SAR11_1013 - polysaccharide deacetylase-like protein 997 25.77 0 993416..994618 + 400 71083705 - SAR11_1014 - putative pyridoxamine 5-phosphate-dependent dehydrase 998 22.63 -1 994615..995427 + 270 71083706 - SAR11_1015 - NAD dependent epimerase/dehydratase f 999 21.78 -1 995434..996108 + 224 71083707 - SAR11_1016 - hypothetical protein 1000 21.91 -1 996113..997066 + 317 71083708 - SAR11_1017 - hypothetical protein 1001 20.16 -2 997089..997862 - 257 71083709 - SAR11_1018 - methyltransferase FkbM 1002 29.68 0 997872..998828 - 318 71083710 xerD SAR11_1019 - integrase/recombinase xerD-like protein 1003 33.78 +1 999127..999570 + 147 71083711 - SAR11_1020 - acetyltransferase 1004 36.81 +1 999542..999829 + 95 71083712 ada SAR11_1021 - 6-O-methylguanine DNA methyltransferase 1005 34.44 +1 1000426..1001238 - 270 71083713 - SAR11_1022 - DMT family permease 1006 28.90 0 1001292..1002194 - 300 71083714 - SAR11_1023 - hypothetical protein 1007 27.76 0 1002194..1003486 - 430 71083715 hom SAR11_1025 - homoserine dehydrogenase 1008 25.78 0 1003487..1003711 - 74 71083716 - SAR11_1026 - hypothetical protein 1009 26.00 0 1003708..1004730 - 340 71083717 argC SAR11_1027 - N-acetyl-gamma-glutamyl-phosphate reductase 1010 34.22 +1 1004766..1005215 - 149 71083718 rpsI SAR11_1028 - ribosomal protein S9 1011 29.87 0 1005217..1005678 - 153 71083719 rplM SAR11_1029 - 50S ribosomal protein L13 1012 35.29 +1 1005891..1007219 + 442 71083720 metY SAR11_1030 - O-acetylhomoserine (thiol)-lyase 1013 25.82 0 1007212..1008222 - 336 71083721 coxW SAR11_1031 - cytochrome c oxidase assembly protein (isoform 1) 1014 20.27 -2 1008265..1008555 + 96 71083722 - SAR11_1032 - chorismate mutase II 1015 32.29 0 1008558..1008749 - 63 71083723 rpmG SAR11_1033 - ribosomal protein L33 1016 22.22 -1 1008751..1009128 - 125 71083724 merR SAR11_1034 - transcription regulator 1017 22.01 -1 1009118..1009426 - 102 71083725 himA SAR11_1035 - DNA-binding protein 1018 28.64 0 1009420..1010421 - 333 71083726 plsX SAR11_1036 - fatty acid/phospholipid synthesis protein PlsX 1019 36.07 +1 1010436..1010618 - 60 71083727 rpmF SAR11_1037 - 50S ribosomal protein L32 1020 21.79 -1 1010626..1011093 - 155 71083728 - SAR11_1038 - hypothetical protein 1021 25.38 0 1011092..1011556 + 154 71083729 - SAR11_1039 - hypothetical protein 1022 35.38 +1 1011564..1013669 - 701 71083730 hppA SAR11_1040 - membrane-bound proton-translocating pyrophosphatase 1023 23.33 -1 1013756..1014715 - 319 71083731 thiL SAR11_1041 - thiamine-phosphate kinase 1024 25.68 0 1014708..1015112 - 134 71083732 nusB SAR11_1042 - antitermination protein NusB 1025 29.46 0 1015115..1015501 - 128 71083733 ribH SAR11_1043 - riboflavin synthase 1026 26.07 0 1015501..1016601 - 366 71083734 ribA SAR11_1044 - GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase 1027 24.07 -1 1016588..1017181 - 197 71083735 ribB SAR11_1045 - riboflavin synthase subunit alpha 1028 24.24 -1 1017186..1018241 - 351 71083736 ribD SAR11_1046 - 5-amino-6-(5-phosphoribosylamino)uracil reductase 1029 31.37 0 1018267..1018725 - 152 71083737 ybaD SAR11_1047 - transcriptional regulator NrdR 1030 33.18 0 1018725..1020035 - 436 71083738 glyA SAR11_1048 - glycine hydroxymethyltransferase 1031 29.11 0 1020038..1020463 - 141 71083739 rpiB SAR11_1049 - ribose-5-phosphate isomerase 1032 32.71 0 1020465..1021106 - 213 71083740 - SAR11_1050 - hypothetical protein 1033 30.71 0 1021179..1022168 + 329 71083741 hemB SAR11_1051 - delta-aminolevulinic acid dehydratase 1034 25.70 0 1022169..1022849 - 226 71083742 recO SAR11_1052 - recombination protein O 1035 26.16 0 1022846..1023514 - 222 71083743 rnc SAR11_1053 - ribonuclease III 1036 25.99 0 1023514..1024248 - 244 71083744 sipF SAR11_1054 - signal peptidase I 1037 23.51 -1 1024245..1024631 - 128 71083745 acpS SAR11_1055 - Holo-[acyl-carrier protein] synthase (Holo-ACP synthase) 1038 25.69 0 1024634..1025353 - 239 71083746 pdxJ SAR11_1056 - pyridoxal phosphate biosynthetic protein PdxJ 1039 25.51 0 1025350..1025937 - 195 71083747 pyrE SAR11_1057 - orotate phosphoribosyltransferase 1040 29.10 0 1025894..1027639 - 581 71083748 - SAR11_1058 - GTP pyrophosphokinase 1041 23.95 -1 1027659..1028180 - 173 71083749 folK SAR11_1059 - 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 1042 28.66 0 1028146..1028616 - 156 71083750 smpB SAR11_1061 - SsrA-binding protein 1043 33.33 0 1028616..1029497 - 293 71083751 dapA SAR11_1062 - dihydrodipicolinate synthase 1044 29.67 0 1029539..1031752 + 737 71083752 slt SAR11_1063 - putative soluble lytic murein transglycosylase precursor (slt) 1045 35.49 +1 1031913..1033166 + 417 71083753 soxB SAR11_1064 - sarcosine oxidase 1046 33.33 0 1033166..1033441 + 91 71083754 soxD SAR11_1065 - sarcosine oxidase delta chain 1047 31.70 0 1033446..1036454 + 1002 71083755 soxA SAR11_1066 - sarcosine oxidase alpha chain 1048 29.86 0 1036522..1037010 + 162 71083756 soxG SAR11_1067 - sarcosine oxidase gamma subunit 1049 33.20 0 1037047..1037814 + 255 71083757 pheC SAR11_1068 - cyclohexadienyl dehydratase 1050 27.31 0 1037915..1038595 + 226 71083758 glnP SAR11_1069 - ABC transporter permease component 1051 31.82 0 1038595..1038858 + 87 71083759 - SAR11_1071 - GCN5-related N-acetyltransferase 1052 28.40 0 1038898..1039383 - 161 71083760 - SAR11_1072 - nuclease-like protein 1053 31.00 0 1039346..1040716 - 456 71083761 norM SAR11_1073 - matE efflux family protein 1054 26.38 0 1040726..1041631 - 301 71083762 yceA SAR11_1074 - rhodanese domain-containing protein 1055 28.11 0 1041631..1042281 - 216 71083763 - SAR11_1075 - O-methyltransferase 1056 30.36 0 1042318..1043796 - 492 71083764 gatB SAR11_1076 - aspartyl/glutamyl-tRNA amidotransferase subunit B 1057 31.41 0 1043797..1045254 - 485 71083765 gatA SAR11_1077 - glutamyl-tRNA(Gln) amidotransferase subunit A 1058 28.12 0 1045254..1045541 - 95 71083766 gatC SAR11_1078 - Glu-tRNAGln amidotransferase C subunit 1059 30.92 0 1045593..1046048 + 151 71083767 - SAR11_1079 - putative Holliday junction resolvase 1060 30.68 0 1046091..1047032 + 313 71083768 pyrB SAR11_1080 - aspartate carbamoyltransferase 1061 30.77 0 1047033..1048319 + 428 71083769 pyrC SAR11_1081 - dihydroorotase 1062 28.30 0 1048322..1048897 + 191 71083770 ygiH SAR11_1082 - hypothetical protein 1063 31.06 0 1048935..1051526 + 863 71083771 topA SAR11_1083 - DNA topoisomerase I 29.30 MEAN 4.13 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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