IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
958	 30.06	0	956384..957085	+	233	71083666	scpB	SAR11_0974	-	segregation and condensation protein b
959	 33.33	0	957128..957328	+	66	71083667	tatA	SAR11_0975	-	twin-arginine translocation protein TatA/E
960	 31.98	0	957334..957555	+	73	71083668	tatB	SAR11_0976	-	twin-arginine translocation protein TatB
961	 28.89	0	957542..958306	+	254	71083669	tatC	SAR11_0977	-	sec-independent protein translocase protein tatC
962	 30.08	0	958299..959558	+	419	71083670	serS	SAR11_0978	-	serine-tRNA ligase
963	 29.12	0	959612..959896	+	94	71083671	yajC	SAR11_0979	-	hypothetical protein
964	 29.60	0	959909..961462	+	517	71083672	secD	SAR11_0980	-	protein-export membrane protein SECD
965	 26.80	0	961462..962349	+	295	71083673	secF	SAR11_0981	-	preprotein translocase chain secF
966	 33.50	+1	962352..962945	-	197	71083674	-	SAR11_0982	-	hypothetical protein
967	 32.08	0	962973..965852	-	959	71083675	uvrA	SAR11_0983	-	excinuclease ABC chain A
968	 34.20	+1	965942..966400	+	152	71083676	ssb	SAR11_0984	-	single-strand binding protein (ssb)
969	 31.22	0	966406..968955	+	849	71083677	gyrA	SAR11_0985	-	DNA gyrase subunit A
970	 23.23	-1	968955..969449	+	164	71083678	kdtB	SAR11_0986	-	pantetheine-phosphate adenylyltransferase
971	 33.33	0	969517..969996	+	159	71083679	ppiB	SAR11_0987	-	peptidylprolyl isomerase
972	 30.73	0	970015..971127	+	370	71083680	tgt	SAR11_0988	-	queuine tRNA-ribosyltransferase
973	 16.30	-2	971129..971263	-	44	71083681	-	SAR11_0989	-	hypothetical protein
974	 34.36	+1	971424..972200	-	258	71083682	-	SAR11_0991	-	M48 family peptidase
975	 28.29	0	972375..972989	+	204	71083683	-	SAR11_0992	-	hypothetical protein
976	 26.32	0	972986..975037	-	683	71083684	recG	SAR11_0993	-	ATP-dependent DNA helicase recG
977	 25.47	0	975062..975328	+	88	71083685	-	SAR11_0994	-	hypothetical protein
978	 27.55	0	975511..976392	+	293	71083686	rarD	SAR11_0995	-	rarD protein
979	 26.65	0	976379..977380	+	333	71083687	mltB	SAR11_0996	-	membrane-bound lytic transglycolase-related protein
980	 22.13	-1	977370..978128	+	252	71083688	-	SAR11_0997	-	hypothetical protein
981	 30.82	0	978121..979272	+	383	71083689	dacC	SAR11_0998	-	serine-type D-Ala-D-Ala carboxypeptidase
982	 21.08	-1	979265..979876	+	203	71083690	tmk	SAR11_0999	-	thymidylate kinase (dTMP kinase)
983	 20.90	-2	979881..980813	+	310	71083691	holB	SAR11_1000	-	DNA polymerase III
984	 28.02	0	980814..982355	+	513	71083692	metS	SAR11_1001	-	methionyl-tRNA synthetase
985	 26.01	0	982348..983112	+	254	71083693	-	SAR11_1002	-	TatD related DNase
986	 25.26	0	983112..983891	+	259	71083694	-	SAR11_1003	-	metallo-beta-lactamase family protein
987	 26.51	0	983880..984392	-	170	71083695	bsaA	SAR11_1004	-	glutathione peroxidase
988	 31.07	0	984438..985544	-	368	71083696	nhaA	SAR11_1005	-	Na+/H+ antiporter 1
989	 25.93	0	985615..986127	-	170	71083697	-	SAR11_1006	-	hypothetical protein
990	 25.18	0	986302..986583	+	93	71083698	ndufs4	SAR11_1007	-	ETC complex I subunit region
991	 32.83	0	986586..987578	+	330	71083699	sbmA	SAR11_1008	-	putative transporter
992	 31.54	0	987578..988525	+	315	71083700	glpX	SAR11_1009	-	fructose 1,6-bisphosphatase II
993	 23.66	-1	988522..990216	+	564	71083701	recJ	SAR11_1010	-	single-stranded-DNA-specific exonuclease RecJ
994	 23.02	-1	990347..990598	+	83	71083702	-	SAR11_1011	-	excinuclease ABC subunit C
995	 23.84	-1	990598..992703	+	701	71083703	-	SAR11_1012	-	glycosyl transferase group 1
996	 22.36	-1	992704..993414	+	236	71083704	yxkH	SAR11_1013	-	polysaccharide deacetylase-like protein
997	 25.77	0	993416..994618	+	400	71083705	-	SAR11_1014	-	putative pyridoxamine 5-phosphate-dependent dehydrase
998	 22.63	-1	994615..995427	+	270	71083706	-	SAR11_1015	-	NAD dependent epimerase/dehydratase f
999	 21.78	-1	995434..996108	+	224	71083707	-	SAR11_1016	-	hypothetical protein
1000	 21.91	-1	996113..997066	+	317	71083708	-	SAR11_1017	-	hypothetical protein
1001	 20.16	-2	997089..997862	-	257	71083709	-	SAR11_1018	-	methyltransferase FkbM
1002	 29.68	0	997872..998828	-	318	71083710	xerD	SAR11_1019	-	integrase/recombinase xerD-like protein
1003	 33.78	+1	999127..999570	+	147	71083711	-	SAR11_1020	-	acetyltransferase
1004	 36.81	+1	999542..999829	+	95	71083712	ada	SAR11_1021	-	6-O-methylguanine DNA methyltransferase
1005	 34.44	+1	1000426..1001238	-	270	71083713	-	SAR11_1022	-	DMT family permease
1006	 28.90	0	1001292..1002194	-	300	71083714	-	SAR11_1023	-	hypothetical protein
1007	 27.76	0	1002194..1003486	-	430	71083715	hom	SAR11_1025	-	homoserine dehydrogenase
1008	 25.78	0	1003487..1003711	-	74	71083716	-	SAR11_1026	-	hypothetical protein
1009	 26.00	0	1003708..1004730	-	340	71083717	argC	SAR11_1027	-	N-acetyl-gamma-glutamyl-phosphate reductase
1010	 34.22	+1	1004766..1005215	-	149	71083718	rpsI	SAR11_1028	-	ribosomal protein S9
1011	 29.87	0	1005217..1005678	-	153	71083719	rplM	SAR11_1029	-	50S ribosomal protein L13
1012	 35.29	+1	1005891..1007219	+	442	71083720	metY	SAR11_1030	-	O-acetylhomoserine (thiol)-lyase
1013	 25.82	0	1007212..1008222	-	336	71083721	coxW	SAR11_1031	-	cytochrome c oxidase assembly protein (isoform 1)
1014	 20.27	-2	1008265..1008555	+	96	71083722	-	SAR11_1032	-	chorismate mutase II
1015	 32.29	0	1008558..1008749	-	63	71083723	rpmG	SAR11_1033	-	ribosomal protein L33
1016	 22.22	-1	1008751..1009128	-	125	71083724	merR	SAR11_1034	-	transcription regulator
1017	 22.01	-1	1009118..1009426	-	102	71083725	himA	SAR11_1035	-	DNA-binding protein
1018	 28.64	0	1009420..1010421	-	333	71083726	plsX	SAR11_1036	-	fatty acid/phospholipid synthesis protein PlsX
1019	 36.07	+1	1010436..1010618	-	60	71083727	rpmF	SAR11_1037	-	50S ribosomal protein L32
1020	 21.79	-1	1010626..1011093	-	155	71083728	-	SAR11_1038	-	hypothetical protein
1021	 25.38	0	1011092..1011556	+	154	71083729	-	SAR11_1039	-	hypothetical protein
1022	 35.38	+1	1011564..1013669	-	701	71083730	hppA	SAR11_1040	-	membrane-bound proton-translocating pyrophosphatase
1023	 23.33	-1	1013756..1014715	-	319	71083731	thiL	SAR11_1041	-	thiamine-phosphate kinase
1024	 25.68	0	1014708..1015112	-	134	71083732	nusB	SAR11_1042	-	antitermination protein NusB
1025	 29.46	0	1015115..1015501	-	128	71083733	ribH	SAR11_1043	-	riboflavin synthase
1026	 26.07	0	1015501..1016601	-	366	71083734	ribA	SAR11_1044	-	GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase
1027	 24.07	-1	1016588..1017181	-	197	71083735	ribB	SAR11_1045	-	riboflavin synthase subunit alpha
1028	 24.24	-1	1017186..1018241	-	351	71083736	ribD	SAR11_1046	-	5-amino-6-(5-phosphoribosylamino)uracil reductase
1029	 31.37	0	1018267..1018725	-	152	71083737	ybaD	SAR11_1047	-	transcriptional regulator NrdR
1030	 33.18	0	1018725..1020035	-	436	71083738	glyA	SAR11_1048	-	glycine hydroxymethyltransferase
1031	 29.11	0	1020038..1020463	-	141	71083739	rpiB	SAR11_1049	-	ribose-5-phosphate isomerase
1032	 32.71	0	1020465..1021106	-	213	71083740	-	SAR11_1050	-	hypothetical protein
1033	 30.71	0	1021179..1022168	+	329	71083741	hemB	SAR11_1051	-	delta-aminolevulinic acid dehydratase
1034	 25.70	0	1022169..1022849	-	226	71083742	recO	SAR11_1052	-	recombination protein O
1035	 26.16	0	1022846..1023514	-	222	71083743	rnc	SAR11_1053	-	ribonuclease III
1036	 25.99	0	1023514..1024248	-	244	71083744	sipF	SAR11_1054	-	signal peptidase I
1037	 23.51	-1	1024245..1024631	-	128	71083745	acpS	SAR11_1055	-	Holo-[acyl-carrier protein] synthase (Holo-ACP synthase)
1038	 25.69	0	1024634..1025353	-	239	71083746	pdxJ	SAR11_1056	-	pyridoxal phosphate biosynthetic protein PdxJ
1039	 25.51	0	1025350..1025937	-	195	71083747	pyrE	SAR11_1057	-	orotate phosphoribosyltransferase
1040	 29.10	0	1025894..1027639	-	581	71083748	-	SAR11_1058	-	GTP pyrophosphokinase
1041	 23.95	-1	1027659..1028180	-	173	71083749	folK	SAR11_1059	-	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
1042	 28.66	0	1028146..1028616	-	156	71083750	smpB	SAR11_1061	-	SsrA-binding protein
1043	 33.33	0	1028616..1029497	-	293	71083751	dapA	SAR11_1062	-	dihydrodipicolinate synthase
1044	 29.67	0	1029539..1031752	+	737	71083752	slt	SAR11_1063	-	putative soluble lytic murein transglycosylase precursor (slt)
1045	 35.49	+1	1031913..1033166	+	417	71083753	soxB	SAR11_1064	-	sarcosine oxidase
1046	 33.33	0	1033166..1033441	+	91	71083754	soxD	SAR11_1065	-	sarcosine oxidase delta chain
1047	 31.70	0	1033446..1036454	+	1002	71083755	soxA	SAR11_1066	-	sarcosine oxidase alpha chain
1048	 29.86	0	1036522..1037010	+	162	71083756	soxG	SAR11_1067	-	sarcosine oxidase gamma subunit
1049	 33.20	0	1037047..1037814	+	255	71083757	pheC	SAR11_1068	-	cyclohexadienyl dehydratase
1050	 27.31	0	1037915..1038595	+	226	71083758	glnP	SAR11_1069	-	ABC transporter permease component
1051	 31.82	0	1038595..1038858	+	87	71083759	-	SAR11_1071	-	GCN5-related N-acetyltransferase
1052	 28.40	0	1038898..1039383	-	161	71083760	-	SAR11_1072	-	nuclease-like protein
1053	 31.00	0	1039346..1040716	-	456	71083761	norM	SAR11_1073	-	matE efflux family protein
1054	 26.38	0	1040726..1041631	-	301	71083762	yceA	SAR11_1074	-	rhodanese domain-containing protein
1055	 28.11	0	1041631..1042281	-	216	71083763	-	SAR11_1075	-	O-methyltransferase
1056	 30.36	0	1042318..1043796	-	492	71083764	gatB	SAR11_1076	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1057	 31.41	0	1043797..1045254	-	485	71083765	gatA	SAR11_1077	-	glutamyl-tRNA(Gln) amidotransferase subunit A
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.