IslandPathversion 1.0

IslandPath Analysis: Candidatus Pelagibacter ubique HTCC1062



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 29.30 STD DEV: 4.13
Candidatus Pelagibacter ubique HTCC1062, complete genome - 1..1308759
1354 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
52	 28.18	0	65036..65326	-	96	71082761	-	SAR11_0052	-	hypothetical protein
53	 32.88	0	65399..65836	-	145	71082762	pulG	SAR11_0053	-	putative pseudo-pilin PulG
54	 37.65	+2	65846..66331	-	161	71082763	pilA	SAR11_0054	-	pilin
55	 30.53	0	66490..66774	+	94	71082764	-	SAR11_0055	-	Sulfate transporter/antisigma-factor antagonist STAS
56	 30.67	0	66771..67070	+	99	71082765	spoIIA	SAR11_0056	-	Sulfate transporter/antisigma-factor antagonist STAS
57	 28.51	0	67078..67512	+	144	71082766	rsbW	SAR11_0057	-	anti-sigma regulatory factor (Ser/Thr protein kinase)
58	 31.06	0	67509..68741	-	410	71082767	pilC	SAR11_0058	-	Type II secretion system PilC
59	 31.28	0	68744..70495	-	583	71082768	pilB	SAR11_0059	-	Type II secretion system PilB
60	 31.21	0	70495..72051	-	518	71082769	pilQ	SAR11_0060	-	Type II secretion PilQ
61	 27.81	0	72054..72560	-	168	71082770	pilP	SAR11_0061	-	type 4 fimbrial biogenesis protein PilP
62	 28.32	0	72547..73224	-	225	71082771	pilO	SAR11_0062	-	type 4 fimbrial biogenesis protein PilO
63	 27.16	0	73227..75770	-	847	71082772	pilMN	SAR11_0063	-	Type II secretion
64	 28.21	0	77115..78461	-	448	71082773	rsbU	SAR11_0064	-	sigma factor sigB regulation protein
65	 26.27	0	78561..79325	+	254	71082774	pild	SAR11_0065	-	Type II secretion PilD
66	 22.78	-1	79386..80105	+	239	71082775	fimc	SAR11_0067	-	membrane-bound pili assembly protein Fimc
67	 37.25	+1	80345..84916	-	1523	71082776	pilY1	SAR11_0068	-	Type II secretion PilY1
68	 30.86	0	85064..85588	-	174	71082777	-	SAR11_0069	-	pilX-type protein
69	 33.33	0	85664..86368	-	234	71082778	-	SAR11_0070	-	type IV pilus assembly protein PilW
70	 31.35	0	86437..87291	-	284	71082779	-	SAR11_0071	-	type IV pilin secretion protein
71	 29.95	0	87366..88016	-	216	71082780	-	SAR11_0072	-	putative pilV-like pilin protein
72	 35.67	+1	88021..88746	-	241	71082781	-	SAR11_0073	-	pilin protein PilU
73	 33.63	+1	88721..89734	-	337	71082782	pilT	SAR11_0074	-	Type II secretion PilT
74	 32.58	0	89886..90548	-	220	71082783	-	SAR11_0075	-	hypothetical protein
75	 26.46	0	90548..91492	-	314	71082784	-	SAR11_0076	-	nucleoside-diphosphate-sugar epimerase
76	 35.03	+1	91514..92458	+	314	71082785	trxB	SAR11_0077	-	thioredoxin reductase
77	 32.16	0	92500..93519	+	339	71082786	-	SAR11_0078	-	NAD dependent epimerase/dehydratase protein
78	 32.44	0	93511..93960	-	149	71082787	ytoQ	SAR11_0079	-	hypothetical protein
79	 33.00	0	93960..95159	-	399	71082788	aatA	SAR11_0080	-	aspartate transaminase
80	 33.33	0	95195..97366	+	723	71082789	uvrB	SAR11_0081	-	excinuclease ABC subunit B
81	 28.69	0	97348..98100	+	250	71082790	-	SAR11_0082	-	short-chain dehydrogenase
82	 22.30	-1	98097..98522	+	141	71082791	folB	SAR11_0083	-	dihydroneopterin aldolase
83	 30.01	0	98509..100344	+	611	71082792	uvrC	SAR11_0084	-	excinuclease ABC subunit C
84	 29.74	0	100347..100931	+	194	71082793	pgsA	SAR11_0085	-	CDP-diacylglycerol
85	 32.99	0	100928..101809	-	293	71082794	ilvE	SAR11_0086	-	branched-chain amino acid aminotransferase
86	 25.34	0	101880..102317	+	145	71082795	petP	SAR11_0087	-	transcriptional regulator
87	 25.52	0	102310..102987	+	225	71082796	petR	SAR11_0088	-	two-component system
88	 27.95	0	102968..104287	+	439	71082797	envZ	SAR11_0089	-	osmolarity sensor protein envZ
89	 19.61	-2	104265..104519	-	84	71082798	-	SAR11_0090	-	hypothetical protein
90	 28.79	0	104566..105336	+	256	71082799	lgt	SAR11_0091	-	prolipoprotein diacylglyceryl transferase
91	 25.67	0	105326..106369	+	347	71082800	cdfA	SAR11_0092	-	cyclopropane-fatty-acyl-phospholipid synthase
92	 21.43	-1	106800..107135	+	111	71082801	-	SAR11_0093	-	hypothetical protein
93	 30.44	0	107142..108074	+	310	71082802	prsA	SAR11_0094	-	ribose-phosphate pyrophosphokinase
94	 33.77	+1	108119..108805	+	228	71082803	rplY	SAR11_0095	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
95	 28.16	0	108851..109411	+	186	71082804	pth	SAR11_0096	-	peptidyl-tRNA hydrolase
96	 30.54	0	109411..110484	+	357	71082805	-	SAR11_0097	-	translation-associated GTPase
97	 34.10	+1	110461..111240	-	259	71082806	fbcH	SAR11_0098	-	ubiquinol-cytochrome-c reductase
98	 34.68	+1	111245..112504	-	419	71082807	petB	SAR11_0099	-	ubiquinol-cytochrome-c reductase
99	 37.25	+1	112514..113023	-	169	71082808	petA	SAR11_0100	-	cytochrome b6-f complex iron-sulfur subunit
100	 28.35	0	113110..113571	+	153	71082809	spoU	SAR11_0101	-	rRNA methylase
101	 29.35	0	113571..114398	+	275	71082810	hemF	SAR11_0102	-	coproporphyrinogen III oxidase
102	 30.61	0	114400..114876	+	158	71082811	greA	SAR11_0103	-	transcription elongation factor
103	 25.33	0	114873..116147	-	424	71082812	pcnB	SAR11_0104	-	Poly(A) polymerase (PAP)
104	 25.53	0	116257..117102	-	281	71082813	ispE	SAR11_0105	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
105	 24.67	-1	117106..118791	-	561	71082814	-	SAR11_0106	-	TPR repeat-containing protein
106	 26.78	0	118803..119534	+	243	71082815	-	SAR11_0107	-	DNA-directed DNA polymerase
107	 28.16	0	119534..120094	+	186	71082816	rnhB	SAR11_0108	-	ribonuclease HII (RNase HII)
108	 30.44	0	120216..121286	+	356	71082817	babIM	SAR11_0109	-	site-specific DNA methyltransferase
109	 26.56	0	121283..122434	-	383	71082818	nah	SAR11_0110	-	salicylate 1-monooxygenase
110	 25.18	0	122434..123414	-	326	71082819	mutY	SAR11_0111	-	A/G-specific adenine glycosylase
111	 25.97	0	123415..123903	+	162	71082820	-	SAR11_0112	-	hypothetical protein
112	 27.71	0	123975..124490	+	171	71082821	-	SAR11_0113	-	DsbA-like protein
113	 30.19	0	124499..127072	+	857	71082822	smc	SAR11_0114	-	SMC family chromosome segregation protein
114	 32.97	0	127081..127356	+	91	71082823	-	SAR11_0115	-	transmembrane protein
115	 33.06	0	127369..128103	+	244	71082824	atpB	SAR11_0116	-	F0F1 ATP synthase subunit A
116	 39.47	+2	128123..128350	+	75	71082825	atpE	SAR11_0117	-	F0F1 ATP synthase subunit C
117	 30.93	0	128407..128946	+	179	71082826	-	SAR11_0118	-	H+-transporting two-sector ATPase (subunit b')
118	 25.10	-1	128936..129433	+	165	71082827	atpF	SAR11_0119	-	H+-transporting two-sector ATPase (subunit b)
119	 30.18	0	129473..130930	+	485	71082828	crtI	SAR11_0120	-	phytoene dehydrogenase
120	 24.06	-1	130930..131781	+	283	71082829	crtB	SAR11_0121	-	phytoene synthase
121	 25.58	0	131813..132844	+	343	71082830	crtY	SAR11_0122	-	lycopene cyclase
122	 21.94	-1	132834..133772	+	312	71082831	-	SAR11_0123	-	transmembrane protein
123	 31.64	0	133762..134706	+	314	71082832	lytB	SAR11_0124	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
124	 22.39	-1	134707..135675	+	322	71082833	thrB	SAR11_0125	-	homoserine kinase
125	 31.22	0	135675..136100	+	141	71082834	rnhA	SAR11_0126	-	ribonuclease H (RNase H)
126	 30.25	0	136092..136577	-	161	71082835	pmpA	SAR11_0127	-	peroxisomal membrane protein a (pmp20)
127	 27.10	0	136574..137953	-	459	71082836	thrC	SAR11_0128	-	threonine synthase
128	 23.85	-1	137954..138607	-	217	71082837	surf1	SAR11_0129	-	surfeit locus protein 1
129	 35.23	+1	138618..139406	-	262	71082838	coxC	SAR11_0130	-	cytochrome-c oxidase
130	 30.35	0	139409..139945	-	178	71082839	ctaG	SAR11_0131	-	cytochrome C oxidase assembly protein
131	 25.40	0	139945..140070	-	41	71082840	-	SAR11_0132	-	serine protease inhibitor sgti
132	 30.80	0	140067..140933	-	288	71082841	ctaB	SAR11_0133	-	cytochrome c oxidase assembly factor
133	 35.66	+1	141011..142645	-	544	71082842	cox1	SAR11_0134	-	cytochrome-c oxidase
134	 32.97	0	142648..143463	-	271	71082843	coxB	SAR11_0135	-	cytochrome c oxidase polypeptide II (cytochrome aa3 subunit 2)
135	 26.35	0	143525..144226	-	233	71082844	-	SAR11_0136	-	hypothetical protein
136	 27.75	0	144244..144906	+	220	71082845	dhlB	SAR11_0137	-	(S)-2-haloacid dehalogenase
137	 30.00	0	144899..145258	-	119	71082846	-	SAR11_0138	-	transcriptional regulator
138	 37.55	+1	145353..145589	+	78	71082847	-	SAR11_0139	-	putative glutamate synthetas
139	 29.13	0	145619..145999	+	126	71082848	-	SAR11_0140	-	DoxD-like family protein
140	 34.83	+1	146096..147634	+	512	71082849	-	SAR11_0141	-	ferredoxin-dependent glutamate synthase peptide
141	 33.93	+1	147644..148483	+	279	71082850	-	SAR11_0142	-	pirin
142	 33.23	0	148483..149457	+	324	71082851	qor	SAR11_0143	-	quinone oxidoreductase
143	 29.88	0	149454..149858	-	134	71082852	-	SAR11_0144	-	hypothetical protein
144	 26.97	0	149911..150774	+	287	71082853	ubiA	SAR11_0145	-	4-hydroxybenzoate octaprenyltransferase
145	 28.05	0	150774..152513	+	579	71082854	-	SAR11_0147	-	ABC transporter ATP-binding protein
146	 23.91	-1	152513..153775	+	420	71082855	kdtA	SAR11_0148	-	3-deoxy-D-manno-octulosonic-acid transferase
147	 24.55	-1	153756..154700	+	314	71082856	lpxK	SAR11_0149	-	tetraacyldisaccharide 4'-kinase
148	 24.39	-1	154687..155547	+	286	71082857	htrB	SAR11_0151	-	lipid A biosynthesis lauroyl acyltransferase
149	 24.87	-1	155552..155740	-	62	71082858	-	SAR11_0152	-	hypothetical protein
150	 29.15	0	155762..157027	+	421	71082859	purD	SAR11_0153	-	phosphoribosylamine--glycine ligase
151	 23.81	-1	157024..157590	+	188	71082860	-	SAR11_0154	-	N6-adenine-specific methylase
29.30	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.