IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
879	 60.09	0	1029874..1031775	+	633	158520896	-	Dole_0879	-	methyl-accepting chemotaxis sensory transducer
880	 58.06	0	1031861..1032232	+	123	158520897	-	Dole_0880	-	response regulator receiver protein
881	 58.61	0	1032236..1033849	+	537	158520898	-	Dole_0881	-	putative PAS/PAC sensor protein
882	 56.58	0	1033904..1034458	+	184	158520899	-	Dole_0882	-	hypothetical protein
883	 59.33	0	1034482..1034985	+	167	158520900	-	Dole_0883	-	type IV pilus assembly PilZ
884	 60.09	0	1035339..1036616	-	425	158520901	-	Dole_0884	-	response regulator receiver protein
885	 57.44	0	1036631..1037248	-	205	158520902	-	Dole_0885	-	response regulator receiver protein
886	 59.13	0	1037266..1037889	-	207	158520903	-	Dole_0886	-	response regulator receiver protein
887	 57.18	0	1037861..1038250	-	129	158520904	-	Dole_0887	-	response regulator receiver protein
888	 60.60	0	1038247..1040190	-	647	158520905	-	Dole_0888	-	histidine kinase
889	 50.67	0	1040444..1040893	-	149	158520906	-	Dole_0889	-	hypothetical protein
890	 59.17	0	1040978..1042591	-	537	158520907	-	Dole_0890	-	radical SAM domain-containing protein
891	 60.52	0	1043210..1044331	+	373	158520908	-	Dole_0891	-	2-hydroxyglutaryl-CoA dehydratase D-component
892	 57.61	0	1044328..1045773	+	481	158520909	-	Dole_0892	-	2-hydroxyglutaryl-CoA dehydratase D-component
893	 59.12	0	1045770..1046591	+	273	158520910	-	Dole_0893	-	putative CoA-substrate-specific enzyme activase
894	 60.57	0	1046588..1047358	+	256	158520911	-	Dole_0894	-	putative CoA-substrate-specific enzyme activase
895	 51.75	0	1047425..1047739	+	104	158520912	-	Dole_0895	-	XRE family transcriptional regulator
896	 58.05	0	1047736..1048965	+	409	158520913	-	Dole_0896	-	HipA domain-containing protein
897	 54.64	0	1049047..1049844	+	265	158520914	-	Dole_0897	-	enoyl-CoA hydratase/isomerase
898	 47.77	-1	1049841..1050221	-	126	158520915	-	Dole_0898	-	hypothetical protein
899	 49.19	-1	1050289..1051089	+	266	158520916	-	Dole_0899	-	hypothetical protein
900	 37.55	-2	1051153..1051983	+	276	158520917	-	Dole_0900	-	hypothetical protein
901	 35.66	-2	1052085..1054103	+	672	158520918	-	Dole_0901	-	ATP-dependent OLD family endonuclease
902	 43.59	-2	1054221..1055351	+	376	158520919	-	Dole_0902	-	hypothetical protein
903	 51.85	0	1055437..1056084	+	215	158520920	-	Dole_0903	-	type III restriction system methylase
904	 53.92	0	1056071..1057615	+	514	158520921	-	Dole_0904	-	site-specific DNA-methyltransferase (adenine-specific)
905	 56.25	0	1057608..1060169	+	853	158520922	-	Dole_0905	-	putative restriction enzyme
906	 60.11	0	1060198..1062546	-	782	158520923	-	Dole_0906	-	formate C-acetyltransferase
907	 60.94	0	1062590..1063078	-	162	158520924	-	Dole_0907	-	TPR repeat-containing protein
908	 58.97	0	1063053..1065353	-	766	158520925	-	Dole_0908	-	1A family penicillin-binding protein
909	 58.33	0	1065504..1066415	+	303	158520926	-	Dole_0909	-	TPR repeat-containing protein
910	 60.80	0	1066379..1067554	+	391	158520927	-	Dole_0910	-	hypothetical protein
911	 56.16	0	1067569..1068120	+	183	158520928	-	Dole_0911	-	tellurite resistance protein TehB
912	 61.63	0	1068136..1068552	+	138	158520929	-	Dole_0912	-	thioesterase superfamily protein
913	 55.52	0	1068718..1069623	+	301	158520930	-	Dole_0913	-	response regulator receiver protein
914	 60.86	0	1070458..1070853	+	131	158520931	-	Dole_0914	-	hypothetical protein
915	 59.03	0	1071045..1071620	+	191	158520932	-	Dole_0915	-	membrane protein-like protein
916	 59.67	0	1071623..1072780	+	385	158520933	-	Dole_0916	-	hypothetical protein
917	 58.67	0	1072807..1073544	+	245	158520934	-	Dole_0917	-	ABC transporter-related protein
918	 41.24	-2	1073924..1074214	+	96	158520935	-	Dole_0918	-	hypothetical protein
919	 41.67	-2	1074430..1075341	+	303	158520936	-	Dole_0919	-	HNH endonuclease
920	 39.24	-2	1075506..1076369	+	287	158520937	-	Dole_0920	-	hypothetical protein
921	 53.90	0	1076842..1077687	+	281	158520938	-	Dole_0921	-	abortive infection protein
922	 56.83	0	1077709..1078572	+	287	158520939	-	Dole_0922	-	hypothetical protein
923	 47.92	-1	1078759..1079046	+	95	158520940	-	Dole_0923	-	prevent-host-death family protein
924	 50.34	-1	1079043..1079483	+	146	158520941	-	Dole_0924	-	nucleic acid binding protein
925	 51.36	0	1079568..1079972	+	134	158520942	-	Dole_0925	-	methyl-accepting chemotaxis sensory transducer
926	 51.18	0	1080041..1081060	+	339	158520943	-	Dole_0926	-	O-methyltransferase family protein
927	 55.19	0	1081454..1081915	-	153	158520944	-	Dole_0927	-	hypothetical protein
928	 59.09	0	1082281..1083666	-	461	158520945	-	Dole_0928	-	TetR family transcriptional regulator
929	 58.92	0	1083873..1085498	+	541	158520946	-	Dole_0929	-	acyl-CoA dehydrogenase domain-containing protein
930	 59.44	0	1085645..1086778	+	377	158520947	-	Dole_0930	-	2-hydroxyglutaryl-CoA dehydratase D-component
931	 59.44	0	1086765..1088024	+	419	158520948	-	Dole_0931	-	2-hydroxyglutaryl-CoA dehydratase D-component
932	 59.22	0	1088264..1089445	+	393	158520949	-	Dole_0932	-	lipid-transfer protein
933	 64.13	+1	1089779..1090921	+	380	158520950	-	Dole_0933	-	2-nitropropane dioxygenase NPD
934	 58.92	0	1090956..1092155	+	399	158520951	-	Dole_0934	-	acyl-CoA dehydrogenase domain-containing protein
935	 60.69	0	1092320..1093039	-	239	158520952	-	Dole_0935	-	putative lipoprotein
936	 38.82	-2	1093415..1093669	+	84	158520953	-	Dole_0936	-	XRE family transcriptional regulator
937	 43.14	-2	1093882..1094289	+	135	158520954	-	Dole_0937	-	restriction endonuclease BamHI
938	 41.85	-2	1094286..1095671	-	461	158520955	-	Dole_0938	-	putative RNA methylase
939	 43.71	-2	1095668..1096573	-	301	158520956	-	Dole_0939	-	DNA methylase N-4/N-6 domain-containing protein
940	 62.41	+1	1096596..1097606	-	336	158520957	-	Dole_0940	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
941	 64.24	+1	1097682..1098671	-	329	158520958	-	Dole_0941	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
942	 58.47	0	1098694..1100559	-	621	158520959	-	Dole_0942	-	extracellular solute-binding protein
943	 59.22	0	1100743..1101789	-	348	158520960	-	Dole_0943	-	binding-protein-dependent transport systems inner membrane component
944	 57.82	0	1102025..1103041	-	338	158520961	-	Dole_0944	-	binding-protein-dependent transport systems inner membrane component
945	 61.07	0	1103218..1103610	-	130	158520962	-	Dole_0945	-	ribosomal protein S9
946	 55.71	0	1103629..1104066	-	145	158520963	-	Dole_0946	-	50S ribosomal protein L13
947	 49.83	-1	1104138..1104428	-	96	158520964	-	Dole_0947	-	hypothetical protein
948	 58.80	0	1104550..1105617	-	355	158520965	-	Dole_0948	-	hypothetical protein
949	 57.43	0	1105709..1106953	-	414	158520966	-	Dole_0949	-	PGAP1 family protein
950	 45.98	-1	1107103..1107363	+	86	158520967	-	Dole_0950	-	hypothetical protein
951	 53.26	0	1107407..1109122	+	571	158520968	-	Dole_0951	-	AraC family transcriptional regulator
952	 46.91	-1	1109151..1109312	-	53	158520969	-	Dole_0952	-	hypothetical protein
953	 58.84	0	1109447..1110673	-	408	158520970	-	Dole_0953	-	hypothetical protein
954	 45.30	-1	1110827..1111879	-	350	158520971	-	Dole_0954	-	TPR repeat-containing protein
955	 58.37	0	1112252..1115374	+	1040	158520972	-	Dole_0955	-	hypothetical protein
956	 55.80	0	1115502..1117286	+	594	158520973	-	Dole_0956	-	hypothetical protein
957	 63.30	+1	1117401..1119272	-	623	158520974	-	Dole_0957	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
958	 56.89	0	1119440..1120360	+	306	158520975	-	Dole_0958	-	hypothetical protein
959	 59.31	0	1120366..1121778	-	470	158520976	-	Dole_0959	-	aspartate kinase
960	 60.51	0	1121788..1122177	-	129	158520977	-	Dole_0960	-	L-ectoine synthase
961	 57.10	0	1122177..1123451	-	424	158520978	-	Dole_0961	-	diaminobutyrate--2-oxoglutarate aminotransferase
962	 59.37	0	1123656..1124162	-	168	158520979	-	Dole_0962	-	L-2,4-diaminobutyric acid acetyltransferase
963	 56.48	0	1124163..1125095	-	310	158520980	-	Dole_0963	-	porphobilinogen deaminase
964	 62.07	0	1125894..1126829	+	311	158520981	-	Dole_0964	-	putative radical SAM protein
965	 53.99	0	1126875..1127087	-	70	158520982	-	Dole_0965	-	hypothetical protein
966	 57.58	0	1127492..1129021	+	509	158520983	-	Dole_0966	-	bifunctional GMP synthase/glutamine amidotransferase protein
967	 58.21	0	1129028..1129819	+	263	158520984	-	Dole_0967	-	hypothetical protein
968	 58.63	0	1129879..1130625	-	248	158520985	-	Dole_0968	-	3-deoxy-D-manno-octulosonate cytidylyltransferase
969	 63.33	+1	1130749..1131498	+	249	158520986	-	Dole_0969	-	hypothetical protein
970	 59.02	0	1131506..1133035	+	509	158520987	-	Dole_0970	-	hypothetical protein
971	 64.64	+1	1133011..1133652	+	213	158520988	-	Dole_0971	-	abortive infection protein
972	 60.32	0	1133683..1134438	-	251	158520989	-	Dole_0972	-	hypothetical protein
973	 62.18	0	1134534..1135958	-	474	158520990	-	Dole_0973	-	polynucleotide adenylyltransferase/metal dependent phosphohydrolase
974	 60.12	0	1135970..1136932	-	320	158520991	-	Dole_0974	-	cation diffusion facilitator family transporter
975	 62.18	0	1136964..1138100	-	378	158520992	-	Dole_0975	-	metallophosphoesterase
976	 61.25	0	1138244..1138612	+	122	158520993	-	Dole_0976	-	membrane protein
977	 50.67	0	1138800..1138949	+	49	158520994	-	Dole_0977	-	hypothetical protein
978	 60.20	0	1138963..1140834	+	623	158520995	-	Dole_0978	-	carbamoyltransferase
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.