IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
852	 48.09	-1	1000806..1001876	-	356	158520869	-	Dole_0852	-	type IV pilus assembly PilZ
853	 58.02	0	1002106..1002591	-	161	158520870	-	Dole_0853	-	hypothetical protein
854	 60.42	0	1002588..1003547	-	319	158520871	-	Dole_0854	-	alpha/beta hydrolase domain-containing protein
855	 61.28	0	1003544..1005568	-	674	158520872	-	Dole_0855	-	sodium/hydrogen exchanger
856	 60.57	0	1005609..1006478	-	289	158520873	-	Dole_0856	-	zinc transporter ZupT
857	 57.96	0	1006928..1007260	-	110	158520874	-	Dole_0857	-	hypothetical protein
858	 55.74	0	1007416..1007772	-	118	158520875	-	Dole_0858	-	hypothetical protein
859	 58.31	0	1007945..1009129	-	394	158520876	-	Dole_0859	-	CBS domain-containing protein
860	 61.84	0	1009312..1010409	+	365	158520877	-	Dole_0860	-	6-phosphofructokinase
861	 61.80	0	1010419..1012104	+	561	158520878	-	Dole_0861	-	cobalamin B12-binding domain-containing protein
862	 57.17	0	1012068..1012520	-	150	158520879	-	Dole_0862	-	hypothetical protein
863	 57.87	0	1012517..1012948	-	143	158520880	-	Dole_0863	-	hypothetical protein
864	 52.15	0	1013300..1014043	+	247	158520881	-	Dole_0864	-	hypothetical protein
865	 53.55	0	1014063..1014344	+	93	158520882	-	Dole_0865	-	hypothetical protein
866	 50.11	-1	1014399..1014845	+	148	158520883	-	Dole_0866	-	pseudouridylate synthase-like protein
867	 59.57	0	1014980..1017697	+	905	158520884	-	Dole_0867	-	PAS/PAC sensor hybrid histidine kinase
868	 57.91	0	1017713..1019140	+	475	158520885	-	Dole_0868	-	two component, sigma54 specific, Fis family transcriptional regulator
869	 52.31	0	1019441..1019830	+	129	158520886	-	Dole_0869	-	hypothetical protein
870	 58.93	0	1019847..1020182	+	111	158520887	-	Dole_0870	-	hypothetical protein
871	 61.10	0	1020246..1022330	+	694	158520888	-	Dole_0871	-	CheA signal transduction histidine kinase
872	 60.54	0	1022327..1024384	+	685	158520889	-	Dole_0872	-	methyl-accepting chemotaxis sensory transducer
873	 57.21	0	1024430..1026205	+	591	158520890	-	Dole_0873	-	methyl-accepting chemotaxis sensory transducer
874	 58.93	0	1026258..1026761	+	167	158520891	-	Dole_0874	-	CheW protein
875	 58.46	0	1026923..1027738	+	271	158520892	-	Dole_0875	-	MCP methyltransferase, CheR-type
876	 55.70	0	1027755..1028210	+	151	158520893	-	Dole_0876	-	response regulator receiver protein
877	 60.61	0	1028207..1028767	+	186	158520894	-	Dole_0877	-	hypothetical protein
878	 63.41	+1	1028760..1029896	+	378	158520895	-	Dole_0878	-	response regulator receiver modulated CheB methylesterase
879	 60.09	0	1029874..1031775	+	633	158520896	-	Dole_0879	-	methyl-accepting chemotaxis sensory transducer
880	 58.06	0	1031861..1032232	+	123	158520897	-	Dole_0880	-	response regulator receiver protein
881	 58.61	0	1032236..1033849	+	537	158520898	-	Dole_0881	-	putative PAS/PAC sensor protein
882	 56.58	0	1033904..1034458	+	184	158520899	-	Dole_0882	-	hypothetical protein
883	 59.33	0	1034482..1034985	+	167	158520900	-	Dole_0883	-	type IV pilus assembly PilZ
884	 60.09	0	1035339..1036616	-	425	158520901	-	Dole_0884	-	response regulator receiver protein
885	 57.44	0	1036631..1037248	-	205	158520902	-	Dole_0885	-	response regulator receiver protein
886	 59.13	0	1037266..1037889	-	207	158520903	-	Dole_0886	-	response regulator receiver protein
887	 57.18	0	1037861..1038250	-	129	158520904	-	Dole_0887	-	response regulator receiver protein
888	 60.60	0	1038247..1040190	-	647	158520905	-	Dole_0888	-	histidine kinase
889	 50.67	0	1040444..1040893	-	149	158520906	-	Dole_0889	-	hypothetical protein
890	 59.17	0	1040978..1042591	-	537	158520907	-	Dole_0890	-	radical SAM domain-containing protein
891	 60.52	0	1043210..1044331	+	373	158520908	-	Dole_0891	-	2-hydroxyglutaryl-CoA dehydratase D-component
892	 57.61	0	1044328..1045773	+	481	158520909	-	Dole_0892	-	2-hydroxyglutaryl-CoA dehydratase D-component
893	 59.12	0	1045770..1046591	+	273	158520910	-	Dole_0893	-	putative CoA-substrate-specific enzyme activase
894	 60.57	0	1046588..1047358	+	256	158520911	-	Dole_0894	-	putative CoA-substrate-specific enzyme activase
895	 51.75	0	1047425..1047739	+	104	158520912	-	Dole_0895	-	XRE family transcriptional regulator
896	 58.05	0	1047736..1048965	+	409	158520913	-	Dole_0896	-	HipA domain-containing protein
897	 54.64	0	1049047..1049844	+	265	158520914	-	Dole_0897	-	enoyl-CoA hydratase/isomerase
898	 47.77	-1	1049841..1050221	-	126	158520915	-	Dole_0898	-	hypothetical protein
899	 49.19	-1	1050289..1051089	+	266	158520916	-	Dole_0899	-	hypothetical protein
900	 37.55	-2	1051153..1051983	+	276	158520917	-	Dole_0900	-	hypothetical protein
901	 35.66	-2	1052085..1054103	+	672	158520918	-	Dole_0901	-	ATP-dependent OLD family endonuclease
902	 43.59	-2	1054221..1055351	+	376	158520919	-	Dole_0902	-	hypothetical protein
903	 51.85	0	1055437..1056084	+	215	158520920	-	Dole_0903	-	type III restriction system methylase
904	 53.92	0	1056071..1057615	+	514	158520921	-	Dole_0904	-	site-specific DNA-methyltransferase (adenine-specific)
905	 56.25	0	1057608..1060169	+	853	158520922	-	Dole_0905	-	putative restriction enzyme
906	 60.11	0	1060198..1062546	-	782	158520923	-	Dole_0906	-	formate C-acetyltransferase
907	 60.94	0	1062590..1063078	-	162	158520924	-	Dole_0907	-	TPR repeat-containing protein
908	 58.97	0	1063053..1065353	-	766	158520925	-	Dole_0908	-	1A family penicillin-binding protein
909	 58.33	0	1065504..1066415	+	303	158520926	-	Dole_0909	-	TPR repeat-containing protein
910	 60.80	0	1066379..1067554	+	391	158520927	-	Dole_0910	-	hypothetical protein
911	 56.16	0	1067569..1068120	+	183	158520928	-	Dole_0911	-	tellurite resistance protein TehB
912	 61.63	0	1068136..1068552	+	138	158520929	-	Dole_0912	-	thioesterase superfamily protein
913	 55.52	0	1068718..1069623	+	301	158520930	-	Dole_0913	-	response regulator receiver protein
914	 60.86	0	1070458..1070853	+	131	158520931	-	Dole_0914	-	hypothetical protein
915	 59.03	0	1071045..1071620	+	191	158520932	-	Dole_0915	-	membrane protein-like protein
916	 59.67	0	1071623..1072780	+	385	158520933	-	Dole_0916	-	hypothetical protein
917	 58.67	0	1072807..1073544	+	245	158520934	-	Dole_0917	-	ABC transporter-related protein
918	 41.24	-2	1073924..1074214	+	96	158520935	-	Dole_0918	-	hypothetical protein
919	 41.67	-2	1074430..1075341	+	303	158520936	-	Dole_0919	-	HNH endonuclease
920	 39.24	-2	1075506..1076369	+	287	158520937	-	Dole_0920	-	hypothetical protein
921	 53.90	0	1076842..1077687	+	281	158520938	-	Dole_0921	-	abortive infection protein
922	 56.83	0	1077709..1078572	+	287	158520939	-	Dole_0922	-	hypothetical protein
923	 47.92	-1	1078759..1079046	+	95	158520940	-	Dole_0923	-	prevent-host-death family protein
924	 50.34	-1	1079043..1079483	+	146	158520941	-	Dole_0924	-	nucleic acid binding protein
925	 51.36	0	1079568..1079972	+	134	158520942	-	Dole_0925	-	methyl-accepting chemotaxis sensory transducer
926	 51.18	0	1080041..1081060	+	339	158520943	-	Dole_0926	-	O-methyltransferase family protein
927	 55.19	0	1081454..1081915	-	153	158520944	-	Dole_0927	-	hypothetical protein
928	 59.09	0	1082281..1083666	-	461	158520945	-	Dole_0928	-	TetR family transcriptional regulator
929	 58.92	0	1083873..1085498	+	541	158520946	-	Dole_0929	-	acyl-CoA dehydrogenase domain-containing protein
930	 59.44	0	1085645..1086778	+	377	158520947	-	Dole_0930	-	2-hydroxyglutaryl-CoA dehydratase D-component
931	 59.44	0	1086765..1088024	+	419	158520948	-	Dole_0931	-	2-hydroxyglutaryl-CoA dehydratase D-component
932	 59.22	0	1088264..1089445	+	393	158520949	-	Dole_0932	-	lipid-transfer protein
933	 64.13	+1	1089779..1090921	+	380	158520950	-	Dole_0933	-	2-nitropropane dioxygenase NPD
934	 58.92	0	1090956..1092155	+	399	158520951	-	Dole_0934	-	acyl-CoA dehydrogenase domain-containing protein
935	 60.69	0	1092320..1093039	-	239	158520952	-	Dole_0935	-	putative lipoprotein
936	 38.82	-2	1093415..1093669	+	84	158520953	-	Dole_0936	-	XRE family transcriptional regulator
937	 43.14	-2	1093882..1094289	+	135	158520954	-	Dole_0937	-	restriction endonuclease BamHI
938	 41.85	-2	1094286..1095671	-	461	158520955	-	Dole_0938	-	putative RNA methylase
939	 43.71	-2	1095668..1096573	-	301	158520956	-	Dole_0939	-	DNA methylase N-4/N-6 domain-containing protein
940	 62.41	+1	1096596..1097606	-	336	158520957	-	Dole_0940	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
941	 64.24	+1	1097682..1098671	-	329	158520958	-	Dole_0941	-	oligopeptide/dipeptide ABC transporter, ATPase subunit
942	 58.47	0	1098694..1100559	-	621	158520959	-	Dole_0942	-	extracellular solute-binding protein
943	 59.22	0	1100743..1101789	-	348	158520960	-	Dole_0943	-	binding-protein-dependent transport systems inner membrane component
944	 57.82	0	1102025..1103041	-	338	158520961	-	Dole_0944	-	binding-protein-dependent transport systems inner membrane component
945	 61.07	0	1103218..1103610	-	130	158520962	-	Dole_0945	-	ribosomal protein S9
946	 55.71	0	1103629..1104066	-	145	158520963	-	Dole_0946	-	50S ribosomal protein L13
947	 49.83	-1	1104138..1104428	-	96	158520964	-	Dole_0947	-	hypothetical protein
948	 58.80	0	1104550..1105617	-	355	158520965	-	Dole_0948	-	hypothetical protein
949	 57.43	0	1105709..1106953	-	414	158520966	-	Dole_0949	-	PGAP1 family protein
950	 45.98	-1	1107103..1107363	+	86	158520967	-	Dole_0950	-	hypothetical protein
951	 53.26	0	1107407..1109122	+	571	158520968	-	Dole_0951	-	AraC family transcriptional regulator
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.