IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
807	 62.27	0	934616..935548	+	310	158520824	-	Dole_0807	-	secretion protein HlyD family protein
808	 63.50	+1	935545..936492	+	315	158520825	-	Dole_0808	-	ABC transporter-related protein
809	 63.57	+1	936479..937252	+	257	158520826	-	Dole_0809	-	ABC transporter-related protein
810	 62.58	+1	937249..938349	+	366	158520827	-	Dole_0810	-	ABC-2 type transporter
811	 59.79	0	938544..939677	+	377	158520828	-	Dole_0811	-	ABC-2 type transporter
812	 43.14	-2	939922..940482	+	186	158520829	-	Dole_0812	-	hypothetical protein
813	 51.31	0	940543..940848	-	101	158520830	-	Dole_0813	-	hypothetical protein
814	 51.83	0	940835..942034	-	399	158520831	-	Dole_0814	-	hypothetical protein
815	 55.84	0	942027..942839	-	270	158520832	-	Dole_0815	-	ORF H1617
816	 54.35	0	943234..943899	-	221	158520833	-	Dole_0816	-	TetR family transcriptional regulator
817	 54.90	0	944217..944981	+	254	158520834	-	Dole_0817	-	acetoacetate decarboxylase
818	 60.30	0	945002..946414	+	470	158520835	-	Dole_0818	-	acyl-CoA dehydrogenase domain-containing protein
819	 60.84	0	946436..947671	+	411	158520836	-	Dole_0819	-	acyl-CoA dehydrogenase domain-containing protein
820	 35.05	-2	948229..949275	-	348	158520837	-	Dole_0820	-	hypothetical protein
821	 31.88	-2	949994..950749	-	251	158520838	-	Dole_0821	-	DNA adenine methylase
822	 47.64	-1	951032..952765	-	577	158520839	-	Dole_0822	-	restriction modification system DNA specificity subunit
823	 53.51	0	952762..954243	-	493	158520840	-	Dole_0823	-	N-6 DNA methylase
824	 53.23	0	954240..956591	-	783	158520841	-	Dole_0824	-	EcoEI R domain-containing protein
825	 50.00	-1	956619..957524	-	301	158520842	-	Dole_0825	-	hypothetical protein
826	 54.53	0	958032..958616	+	194	158520843	-	Dole_0826	-	hypothetical protein
827	 58.22	0	958603..959265	+	220	158520844	-	Dole_0827	-	hypothetical protein
828	 48.17	-1	959505..961034	+	509	158520845	-	Dole_0828	-	filamentation induced by cAMP protein Fic
829	 47.70	-1	961200..962438	-	412	158520846	-	Dole_0829	-	ATPase protein
830	 59.54	0	962918..963787	+	289	158520847	-	Dole_0830	-	3-hydroxybutyryl-CoA dehydrogenase
831	 58.94	0	963910..965631	-	573	158520848	-	Dole_0831	-	pyridoxal-dependent decarboxylase
832	 58.11	0	965986..966429	+	147	158520849	-	Dole_0832	-	amino acid-binding ACT domain-containing protein
833	 56.94	0	966496..967647	+	383	158520850	-	Dole_0833	-	extracellular ligand-binding receptor
834	 58.69	0	967924..968826	+	300	158520851	-	Dole_0834	-	inner-membrane translocator
835	 61.81	0	969101..970108	+	335	158520852	-	Dole_0835	-	inner-membrane translocator
836	 61.94	0	970105..970866	+	253	158520853	-	Dole_0836	-	ABC transporter-related protein
837	 59.76	0	970901..971638	+	245	158520854	-	Dole_0837	-	ABC transporter-related protein
838	 61.19	0	971904..973199	+	431	158520855	-	Dole_0838	-	phenylacetate--CoA ligase
839	 60.21	0	973247..973633	+	128	158520856	-	Dole_0839	-	HNH endonuclease
840	 56.36	0	973670..973999	+	109	158520857	-	Dole_0840	-	hypothetical protein
841	 55.50	0	974401..975000	+	199	158520858	-	Dole_0841	-	redoxin domain-containing protein
842	 48.85	-1	975316..983811	+	2831	158520859	-	Dole_0842	-	YD repeat-containing protein
843	 29.56	-2	983824..984141	+	105	158520860	-	Dole_0843	-	hypothetical protein
844	 49.76	-1	984246..985268	+	340	158520861	-	Dole_0844	-	hypothetical protein
845	 62.69	+1	985606..986736	+	376	158520862	-	Dole_0845	-	molybdopterin oxidoreductase Fe4S4 region
846	 61.17	0	986785..988368	+	527	158520863	-	Dole_0846	-	molybdopterin oxidoreductase
847	 61.75	0	988602..990656	-	684	158520864	-	Dole_0847	-	alpha amylase all-beta
848	 57.79	0	990681..992201	-	506	158520865	-	Dole_0848	-	starch synthase catalytic subunit
849	 60.75	0	992453..995005	-	850	158520866	-	Dole_0849	-	alpha-glucan phosphorylase
850	 46.60	-1	995030..995338	-	102	158520867	-	Dole_0850	-	glycoside hydrolase family protein
851	 64.55	+1	995850..1000151	-	1433	158520868	-	Dole_0851	-	Amylo-alpha-16-glucosidase
852	 48.09	-1	1000806..1001876	-	356	158520869	-	Dole_0852	-	type IV pilus assembly PilZ
853	 58.02	0	1002106..1002591	-	161	158520870	-	Dole_0853	-	hypothetical protein
854	 60.42	0	1002588..1003547	-	319	158520871	-	Dole_0854	-	alpha/beta hydrolase domain-containing protein
855	 61.28	0	1003544..1005568	-	674	158520872	-	Dole_0855	-	sodium/hydrogen exchanger
856	 60.57	0	1005609..1006478	-	289	158520873	-	Dole_0856	-	zinc transporter ZupT
857	 57.96	0	1006928..1007260	-	110	158520874	-	Dole_0857	-	hypothetical protein
858	 55.74	0	1007416..1007772	-	118	158520875	-	Dole_0858	-	hypothetical protein
859	 58.31	0	1007945..1009129	-	394	158520876	-	Dole_0859	-	CBS domain-containing protein
860	 61.84	0	1009312..1010409	+	365	158520877	-	Dole_0860	-	6-phosphofructokinase
861	 61.80	0	1010419..1012104	+	561	158520878	-	Dole_0861	-	cobalamin B12-binding domain-containing protein
862	 57.17	0	1012068..1012520	-	150	158520879	-	Dole_0862	-	hypothetical protein
863	 57.87	0	1012517..1012948	-	143	158520880	-	Dole_0863	-	hypothetical protein
864	 52.15	0	1013300..1014043	+	247	158520881	-	Dole_0864	-	hypothetical protein
865	 53.55	0	1014063..1014344	+	93	158520882	-	Dole_0865	-	hypothetical protein
866	 50.11	-1	1014399..1014845	+	148	158520883	-	Dole_0866	-	pseudouridylate synthase-like protein
867	 59.57	0	1014980..1017697	+	905	158520884	-	Dole_0867	-	PAS/PAC sensor hybrid histidine kinase
868	 57.91	0	1017713..1019140	+	475	158520885	-	Dole_0868	-	two component, sigma54 specific, Fis family transcriptional regulator
869	 52.31	0	1019441..1019830	+	129	158520886	-	Dole_0869	-	hypothetical protein
870	 58.93	0	1019847..1020182	+	111	158520887	-	Dole_0870	-	hypothetical protein
871	 61.10	0	1020246..1022330	+	694	158520888	-	Dole_0871	-	CheA signal transduction histidine kinase
872	 60.54	0	1022327..1024384	+	685	158520889	-	Dole_0872	-	methyl-accepting chemotaxis sensory transducer
873	 57.21	0	1024430..1026205	+	591	158520890	-	Dole_0873	-	methyl-accepting chemotaxis sensory transducer
874	 58.93	0	1026258..1026761	+	167	158520891	-	Dole_0874	-	CheW protein
875	 58.46	0	1026923..1027738	+	271	158520892	-	Dole_0875	-	MCP methyltransferase, CheR-type
876	 55.70	0	1027755..1028210	+	151	158520893	-	Dole_0876	-	response regulator receiver protein
877	 60.61	0	1028207..1028767	+	186	158520894	-	Dole_0877	-	hypothetical protein
878	 63.41	+1	1028760..1029896	+	378	158520895	-	Dole_0878	-	response regulator receiver modulated CheB methylesterase
879	 60.09	0	1029874..1031775	+	633	158520896	-	Dole_0879	-	methyl-accepting chemotaxis sensory transducer
880	 58.06	0	1031861..1032232	+	123	158520897	-	Dole_0880	-	response regulator receiver protein
881	 58.61	0	1032236..1033849	+	537	158520898	-	Dole_0881	-	putative PAS/PAC sensor protein
882	 56.58	0	1033904..1034458	+	184	158520899	-	Dole_0882	-	hypothetical protein
883	 59.33	0	1034482..1034985	+	167	158520900	-	Dole_0883	-	type IV pilus assembly PilZ
884	 60.09	0	1035339..1036616	-	425	158520901	-	Dole_0884	-	response regulator receiver protein
885	 57.44	0	1036631..1037248	-	205	158520902	-	Dole_0885	-	response regulator receiver protein
886	 59.13	0	1037266..1037889	-	207	158520903	-	Dole_0886	-	response regulator receiver protein
887	 57.18	0	1037861..1038250	-	129	158520904	-	Dole_0887	-	response regulator receiver protein
888	 60.60	0	1038247..1040190	-	647	158520905	-	Dole_0888	-	histidine kinase
889	 50.67	0	1040444..1040893	-	149	158520906	-	Dole_0889	-	hypothetical protein
890	 59.17	0	1040978..1042591	-	537	158520907	-	Dole_0890	-	radical SAM domain-containing protein
891	 60.52	0	1043210..1044331	+	373	158520908	-	Dole_0891	-	2-hydroxyglutaryl-CoA dehydratase D-component
892	 57.61	0	1044328..1045773	+	481	158520909	-	Dole_0892	-	2-hydroxyglutaryl-CoA dehydratase D-component
893	 59.12	0	1045770..1046591	+	273	158520910	-	Dole_0893	-	putative CoA-substrate-specific enzyme activase
894	 60.57	0	1046588..1047358	+	256	158520911	-	Dole_0894	-	putative CoA-substrate-specific enzyme activase
895	 51.75	0	1047425..1047739	+	104	158520912	-	Dole_0895	-	XRE family transcriptional regulator
896	 58.05	0	1047736..1048965	+	409	158520913	-	Dole_0896	-	HipA domain-containing protein
897	 54.64	0	1049047..1049844	+	265	158520914	-	Dole_0897	-	enoyl-CoA hydratase/isomerase
898	 47.77	-1	1049841..1050221	-	126	158520915	-	Dole_0898	-	hypothetical protein
899	 49.19	-1	1050289..1051089	+	266	158520916	-	Dole_0899	-	hypothetical protein
900	 37.55	-2	1051153..1051983	+	276	158520917	-	Dole_0900	-	hypothetical protein
901	 35.66	-2	1052085..1054103	+	672	158520918	-	Dole_0901	-	ATP-dependent OLD family endonuclease
902	 43.59	-2	1054221..1055351	+	376	158520919	-	Dole_0902	-	hypothetical protein
903	 51.85	0	1055437..1056084	+	215	158520920	-	Dole_0903	-	type III restriction system methylase
904	 53.92	0	1056071..1057615	+	514	158520921	-	Dole_0904	-	site-specific DNA-methyltransferase (adenine-specific)
905	 56.25	0	1057608..1060169	+	853	158520922	-	Dole_0905	-	putative restriction enzyme
906	 60.11	0	1060198..1062546	-	782	158520923	-	Dole_0906	-	formate C-acetyltransferase
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.