IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
713	 55.07	0	843540..843884	+	114	158520730	-	Dole_0713	-	ribosomal protein L22
714	 56.07	0	843900..844550	+	216	158520731	-	Dole_0714	-	ribosomal protein S3
715	 58.70	0	844575..844988	+	137	158520732	-	Dole_0715	-	50S ribosomal protein L16
716	 51.32	0	844988..845176	+	62	158520733	-	Dole_0716	-	ribosomal protein L29
717	 57.36	0	845210..845467	+	85	158520734	-	Dole_0717	-	ribosomal protein S17
718	 53.66	0	845489..845857	+	122	158520735	-	Dole_0718	-	ribosomal protein L14
719	 50.76	0	845887..846213	+	108	158520736	-	Dole_0719	-	ribosomal protein L24
720	 52.41	0	846243..846782	+	179	158520737	-	Dole_0720	-	50S ribosomal protein L5
721	 54.84	0	846843..847028	+	61	158520738	-	Dole_0721	-	30S ribosomal protein S14
722	 52.88	0	847102..847500	+	132	158520739	-	Dole_0722	-	ribosomal protein S8
723	 56.69	0	847517..848047	+	176	158520740	-	Dole_0723	-	ribosomal protein L6
724	 55.73	0	848065..848439	+	124	158520741	-	Dole_0724	-	ribosomal protein L18
725	 58.63	0	848516..849013	+	165	158520742	-	Dole_0725	-	ribosomal protein S5
726	 56.90	0	849052..849225	+	57	158520743	-	Dole_0726	-	ribosomal protein L30
727	 62.16	0	849212..849655	+	147	158520744	-	Dole_0727	-	ribosomal protein L15
728	 56.36	0	849655..850944	+	429	158520745	-	Dole_0728	-	preprotein translocase, SecY subunit
729	 49.77	-1	850986..851204	+	72	158520746	-	Dole_0729	-	translation initiation factor IF-1
730	 54.17	0	851398..851781	+	127	158520747	-	Dole_0730	-	ribosomal protein S13
731	 61.50	0	851807..852193	+	128	158520748	-	Dole_0731	-	ribosomal protein S11
732	 54.23	0	852255..852881	+	208	158520749	-	Dole_0732	-	RNA-binding S4 domain-containing protein
733	 56.57	0	852995..854014	+	339	158520750	-	Dole_0733	-	DNA-directed RNA polymerase, alpha subunit
734	 62.52	+1	854023..854649	+	208	158520751	-	Dole_0734	-	ribosomal protein L17
735	 59.39	0	854693..855736	-	347	158520752	-	Dole_0735	-	diguanylate cyclase with GAF sensor
736	 54.01	0	855920..857104	-	394	158520753	-	Dole_0736	-	hypothetical protein
737	 56.33	0	857189..858049	-	286	158520754	-	Dole_0737	-	hypothetical protein
738	 60.60	0	858102..859997	-	631	158520755	-	Dole_0738	-	hypothetical protein
739	 55.71	0	861664..862950	-	428	158520756	-	Dole_0739	-	CRISPR-associated TIGR02710 family
740	 53.66	0	862978..864153	-	391	158520757	-	Dole_0740	-	CRISPR-associated RAMP Csm5 family protein
741	 57.77	0	864150..865082	-	310	158520758	-	Dole_0741	-	hypothetical protein
742	 55.69	0	865085..865813	-	242	158520759	-	Dole_0742	-	CRISPR-associated RAMP Csm3 family protein
743	 50.30	-1	865834..866328	-	164	158520760	-	Dole_0743	-	CRISPR-associated Csm2 family protein
744	 54.85	0	866347..868884	-	845	158520761	-	Dole_0744	-	CRISPR-associated Csm1 family protein
745	 56.01	0	868896..870002	-	368	158520762	-	Dole_0745	-	CRISPR-associated protein APE2256 family
746	 53.85	0	870439..871632	-	397	158520763	-	Dole_0746	-	CRISPR-associated NE0113 family protein
747	 56.64	0	871644..872561	-	305	158520764	-	Dole_0747	-	hypothetical protein
748	 60.23	0	872721..873512	-	263	158520765	-	Dole_0748	-	proto-chlorophyllide reductase 57 kD subunit
749	 57.70	0	873684..874508	-	274	158520766	-	Dole_0749	-	hydroxyethylthiazole kinase
750	 59.54	0	874533..874967	-	144	158520767	-	Dole_0750	-	MOSC domain-containing protein
751	 58.18	0	875173..875808	-	211	158520768	-	Dole_0751	-	methionine biosynthesis protein MetW
752	 60.20	0	875780..876955	-	391	158520769	-	Dole_0752	-	homoserine O-acetyltransferase
753	 61.59	0	876952..878211	-	419	158520770	-	Dole_0753	-	O-acetylhomoserine aminocarboxypropyltransferase
754	 58.23	0	878213..878674	-	153	158520771	-	Dole_0754	-	hypothetical protein
755	 56.70	0	878748..879269	+	173	158520772	-	Dole_0755	-	NifU domain-containing protein
756	 57.82	0	879299..880462	+	387	158520773	-	Dole_0756	-	aminotransferase class V
757	 57.99	0	880542..881048	-	168	158520774	-	Dole_0757	-	hypothetical protein
758	 62.64	+1	881077..881598	-	173	158520775	-	Dole_0758	-	hypothetical protein
759	 59.75	0	881633..882037	-	134	158520776	-	Dole_0759	-	thioesterase superfamily protein
760	 53.18	0	882034..882567	-	177	158520777	-	Dole_0760	-	hemerythrin HHE cation binding domain-containing protein
761	 56.48	0	882643..883290	-	215	158520778	-	Dole_0761	-	hypothetical protein
762	 61.67	0	883359..884159	-	266	158520779	-	Dole_0762	-	arsenite S-adenosylmethyltransferase
763	 59.97	0	884466..885734	-	422	158520780	-	Dole_0763	-	major facilitator transporter
764	 53.72	0	885912..886838	-	308	158520781	-	Dole_0764	-	hypothetical protein
765	 58.56	0	886995..887660	-	221	158520782	-	Dole_0765	-	hypothetical protein
766	 56.83	0	887740..888369	-	209	158520783	-	Dole_0766	-	type IV pilus assembly PilZ
767	 60.17	0	888473..890995	-	840	158520784	-	Dole_0767	-	DNA internalization-related competence protein ComEC/Rec2
768	 61.40	0	891281..892438	-	385	158520785	-	Dole_0768	-	hypothetical protein
769	 59.94	0	892440..893837	-	465	158520786	-	Dole_0769	-	FAD linked oxidase domain-containing protein
770	 59.43	0	893842..894864	-	340	158520787	-	Dole_0770	-	hypothetical protein
771	 57.05	0	894929..895666	-	245	158520788	-	Dole_0771	-	heat shock protein DnaJ domain-containing protein
772	 58.73	0	895810..898518	-	902	158520789	-	Dole_0772	-	peptidase C14 caspase catalytic subunit p20
773	 60.85	0	898641..899861	-	406	158520790	-	Dole_0773	-	aspartate kinase
774	 60.40	0	899915..900409	-	164	158520791	-	Dole_0774	-	hypothetical protein
775	 62.80	+1	900363..901964	-	533	158520792	-	Dole_0775	-	carbohydrate kinase, YjeF related protein
776	 63.01	+1	902418..903128	-	236	158520793	-	Dole_0776	-	pyridoxal phosphate biosynthetic protein PdxJ
777	 59.52	0	903309..903602	-	97	158520794	-	Dole_0777	-	hypothetical protein
778	 59.05	0	903652..906027	-	791	158520795	-	Dole_0778	-	metal dependent phosphohydrolase
779	 58.33	0	906222..907217	-	331	158520796	-	Dole_0779	-	PhoH family protein
780	 59.00	0	907396..907917	+	173	158520797	-	Dole_0780	-	colicin V production protein
781	 58.89	0	907905..908714	+	269	158520798	-	Dole_0781	-	MazG family protein
782	 59.52	0	908863..909492	+	209	158520799	-	Dole_0782	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
783	 60.13	0	909486..910265	+	259	158520800	-	Dole_0783	-	imidazoleglycerol phosphate synthase, cyclase subunit
784	 53.02	0	910473..911102	-	209	158520801	-	Dole_0784	-	hypothetical protein
785	 58.90	0	911471..912847	+	458	158520802	-	Dole_0785	-	hypothetical protein
786	 57.61	0	912869..914005	-	378	158520803	-	Dole_0786	-	hypothetical protein
787	 57.18	0	914227..915375	-	382	158520804	-	Dole_0787	-	platelet-activating factor acetylhydrolase plasma/intracellular isoform II
788	 56.23	0	915875..916669	-	264	158520805	-	Dole_0788	-	hypothetical protein
789	 35.39	-2	916725..917600	-	291	158520806	-	Dole_0789	-	hypothetical protein
790	 60.89	0	917745..919823	-	692	158520807	-	Dole_0790	-	two component regulator propeller domain-containing protein
791	 60.52	0	920127..921119	-	330	158520808	-	Dole_0791	-	beta-lactamase domain-containing protein
792	 58.79	0	921123..921503	-	126	158520809	-	Dole_0792	-	hypothetical protein
793	 50.20	-1	921659..922666	+	335	158520810	-	Dole_0793	-	hypothetical protein
794	 57.37	0	922791..924263	-	490	158520811	-	Dole_0794	-	sodium/sulphate symporter
795	 53.30	0	924644..925204	-	186	158520812	-	Dole_0795	-	CBS domain-containing protein
796	 58.71	0	925265..926998	-	577	158520813	-	Dole_0796	-	hypothetical protein
797	 57.40	0	927011..927517	-	168	158520814	-	Dole_0797	-	hypothetical protein
798	 56.49	0	927875..928159	+	94	158520815	-	Dole_0798	-	hypothetical protein
799	 61.45	0	928194..928538	+	114	158520816	-	Dole_0799	-	hypothetical protein
800	 65.22	+1	928606..929571	+	321	158520817	-	Dole_0800	-	ATP synthase F0, C subunit
801	 51.56	0	929650..930324	+	224	158520818	-	Dole_0801	-	ATP synthase F0, A subunit
802	 65.46	+1	930368..930616	+	82	158520819	-	Dole_0802	-	ATP synthase F0, C subunit
803	 59.26	0	930766..931224	+	152	158520820	-	Dole_0803	-	H+transporting two-sector ATPase B/B' subunit
804	 58.10	0	931221..931850	+	209	158520821	-	Dole_0804	-	H+transporting two-sector ATPase B/B' subunit
805	 56.75	0	932367..932981	+	204	158520822	-	Dole_0805	-	TetR family transcriptional regulator
806	 64.65	+1	932989..934377	+	462	158520823	-	Dole_0806	-	outer membrane efflux protein
807	 62.27	0	934616..935548	+	310	158520824	-	Dole_0807	-	secretion protein HlyD family protein
808	 63.50	+1	935545..936492	+	315	158520825	-	Dole_0808	-	ABC transporter-related protein
809	 63.57	+1	936479..937252	+	257	158520826	-	Dole_0809	-	ABC transporter-related protein
810	 62.58	+1	937249..938349	+	366	158520827	-	Dole_0810	-	ABC-2 type transporter
811	 59.79	0	938544..939677	+	377	158520828	-	Dole_0811	-	ABC-2 type transporter
812	 43.14	-2	939922..940482	+	186	158520829	-	Dole_0812	-	hypothetical protein
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.