IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
656	 60.37	0	783121..783549	-	142	158520673	-	Dole_0656	-	peptidylprolyl isomerase FKBP-type
657	 41.56	-2	783599..783841	+	80	158520674	-	Dole_0657	-	hypothetical protein
658	 46.26	-1	783838..784131	+	97	158520675	-	Dole_0658	-	hypothetical protein
659	 51.14	0	784128..784346	+	72	158520676	-	Dole_0659	-	hypothetical protein
660	 51.37	0	784747..786099	-	450	158520677	-	Dole_0660	-	transposase IS4 family protein
661	 47.15	-1	786210..786701	-	163	158520678	-	Dole_0661	-	hypothetical protein
662	 41.24	-2	786689..787219	-	176	158520679	-	Dole_0662	-	hypothetical protein
663	 62.03	0	787789..788478	-	229	158520680	-	Dole_0663	-	lysine exporter protein LysE/YggA
664	 59.12	0	788630..789172	-	180	158520681	-	Dole_0664	-	nitroreductase
665	 56.54	0	789220..789930	-	236	158520682	-	Dole_0665	-	enoyl-CoA hydratase/isomerase
666	 54.23	0	790118..790318	-	66	158520683	-	Dole_0666	-	HesB family selenoprotein
667	 51.43	0	790337..790441	-	34	158520684	-	Dole_0667	-	hypothetical protein
668	 58.50	0	790610..791197	-	195	158520685	-	Dole_0668	-	appr-1-p processing domain-containing protein
669	 61.48	0	791783..793054	+	423	158520686	-	Dole_0669	-	histidyl-tRNA synthetase
670	 61.04	0	793060..794853	+	597	158520687	-	Dole_0670	-	aspartyl-tRNA synthetase
671	 64.26	+1	794857..796146	+	429	158520688	-	Dole_0671	-	acetyl-CoA acetyltransferase
672	 56.41	0	796186..796341	+	51	158520689	-	Dole_0672	-	hypothetical protein
673	 59.49	0	796420..798912	+	830	158520690	-	Dole_0673	-	DNA gyrase, A subunit
674	 63.78	+1	798905..799945	+	346	158520691	-	Dole_0674	-	glycerol-3-phosphate dehydrogenase (NAD(P)(+))
675	 60.76	0	799990..800751	+	253	158520692	-	Dole_0675	-	DNA repair protein RadC
676	 58.52	0	800735..801004	+	89	158520693	-	Dole_0676	-	hypothetical protein
677	 60.87	0	801226..802416	+	396	158520694	-	Dole_0677	-	phosphoglycerate kinase
678	 53.46	0	802550..803632	+	360	158520695	-	Dole_0678	-	hypothetical protein
679	 63.74	+1	803678..804976	+	432	158520696	-	Dole_0679	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
680	 63.82	+1	804973..806130	+	385	158520697	-	Dole_0680	-	8-amino-7-oxononanoate synthase
681	 63.82	+1	806127..806759	+	210	158520698	-	Dole_0681	-	dethiobiotin synthase
682	 61.89	0	806753..807757	+	334	158520699	-	Dole_0682	-	biotin synthase
683	 64.08	+1	808169..809404	+	411	158520700	-	Dole_0683	-	molybdenum cofactor synthesis domain-containing protein
684	 62.46	+1	809496..811442	+	648	158520701	-	Dole_0684	-	molybdenum cofactor synthesis domain-containing protein
685	 34.01	-2	812027..812320	+	97	158520702	-	Dole_0685	-	hypothetical protein
686	 31.19	-2	812511..812930	+	139	158520703	-	Dole_0686	-	hypothetical protein
687	 47.23	-1	813100..814128	+	342	158520704	-	Dole_0687	-	putative DNA-binding protein
688	 57.62	0	814168..814620	+	150	158520705	-	Dole_0688	-	hypothetical protein
689	 62.73	+1	814816..817458	+	880	158520706	-	Dole_0689	-	hypothetical protein
690	 62.89	+1	817498..818874	+	458	158520707	-	Dole_0690	-	hypothetical protein
691	 52.16	0	819010..819264	-	84	158520708	-	Dole_0691	-	hypothetical protein
692	 60.61	0	819326..820051	-	241	158520709	-	Dole_0692	-	4-vinyl reductase 4VR
693	 60.36	0	820073..821689	-	538	158520710	-	Dole_0693	-	tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit
694	 59.90	0	821988..823775	-	595	158520711	-	Dole_0694	-	lytic transglycosylase catalytic
695	 60.80	0	824525..825718	+	397	158520712	-	Dole_0695	-	elongation factor Tu
696	 58.52	0	826097..826489	+	130	158520713	-	Dole_0696	-	preprotein translocase, SecE subunit
697	 57.06	0	826507..827037	+	176	158520714	-	Dole_0697	-	NusG antitermination factor
698	 56.57	0	827055..827480	+	141	158520715	-	Dole_0698	-	ribosomal protein L11
699	 60.28	0	827493..828197	+	234	158520716	-	Dole_0699	-	ribosomal protein L1
700	 58.67	0	828429..828953	+	174	158520717	-	Dole_0700	-	ribosomal protein L10
701	 58.40	0	829014..829400	+	128	158520718	-	Dole_0701	-	ribosomal protein L7/L12
702	 59.80	0	829582..833688	+	1368	158520719	-	Dole_0702	-	DNA-directed RNA polymerase, beta subunit
703	 59.78	0	833692..838035	+	1447	158520720	-	Dole_0703	-	DNA-directed RNA polymerase, beta' subunit
704	 60.22	0	838176..838547	+	123	158520721	-	Dole_0704	-	30S ribosomal protein S12
705	 58.81	0	838608..839078	+	156	158520722	-	Dole_0705	-	30S ribosomal protein S7
706	 60.72	0	839167..840360	+	397	158520723	-	Dole_0706	-	elongation factor Tu
707	 55.88	0	840404..840709	+	101	158520724	-	Dole_0707	-	ribosomal protein S10
708	 55.50	0	840738..841364	+	208	158520725	-	Dole_0708	-	ribosomal protein L3
709	 56.80	0	841414..842031	+	205	158520726	-	Dole_0709	-	ribosomal protein L4/L1e
710	 55.21	0	842031..842318	+	95	158520727	-	Dole_0710	-	ribosomal protein L25/L23
711	 59.78	0	842331..843158	+	275	158520728	-	Dole_0711	-	50S ribosomal protein L2
712	 50.18	-1	843205..843483	+	92	158520729	-	Dole_0712	-	ribosomal protein S19
713	 55.07	0	843540..843884	+	114	158520730	-	Dole_0713	-	ribosomal protein L22
714	 56.07	0	843900..844550	+	216	158520731	-	Dole_0714	-	ribosomal protein S3
715	 58.70	0	844575..844988	+	137	158520732	-	Dole_0715	-	50S ribosomal protein L16
716	 51.32	0	844988..845176	+	62	158520733	-	Dole_0716	-	ribosomal protein L29
717	 57.36	0	845210..845467	+	85	158520734	-	Dole_0717	-	ribosomal protein S17
718	 53.66	0	845489..845857	+	122	158520735	-	Dole_0718	-	ribosomal protein L14
719	 50.76	0	845887..846213	+	108	158520736	-	Dole_0719	-	ribosomal protein L24
720	 52.41	0	846243..846782	+	179	158520737	-	Dole_0720	-	50S ribosomal protein L5
721	 54.84	0	846843..847028	+	61	158520738	-	Dole_0721	-	30S ribosomal protein S14
722	 52.88	0	847102..847500	+	132	158520739	-	Dole_0722	-	ribosomal protein S8
723	 56.69	0	847517..848047	+	176	158520740	-	Dole_0723	-	ribosomal protein L6
724	 55.73	0	848065..848439	+	124	158520741	-	Dole_0724	-	ribosomal protein L18
725	 58.63	0	848516..849013	+	165	158520742	-	Dole_0725	-	ribosomal protein S5
726	 56.90	0	849052..849225	+	57	158520743	-	Dole_0726	-	ribosomal protein L30
727	 62.16	0	849212..849655	+	147	158520744	-	Dole_0727	-	ribosomal protein L15
728	 56.36	0	849655..850944	+	429	158520745	-	Dole_0728	-	preprotein translocase, SecY subunit
729	 49.77	-1	850986..851204	+	72	158520746	-	Dole_0729	-	translation initiation factor IF-1
730	 54.17	0	851398..851781	+	127	158520747	-	Dole_0730	-	ribosomal protein S13
731	 61.50	0	851807..852193	+	128	158520748	-	Dole_0731	-	ribosomal protein S11
732	 54.23	0	852255..852881	+	208	158520749	-	Dole_0732	-	RNA-binding S4 domain-containing protein
733	 56.57	0	852995..854014	+	339	158520750	-	Dole_0733	-	DNA-directed RNA polymerase, alpha subunit
734	 62.52	+1	854023..854649	+	208	158520751	-	Dole_0734	-	ribosomal protein L17
735	 59.39	0	854693..855736	-	347	158520752	-	Dole_0735	-	diguanylate cyclase with GAF sensor
736	 54.01	0	855920..857104	-	394	158520753	-	Dole_0736	-	hypothetical protein
737	 56.33	0	857189..858049	-	286	158520754	-	Dole_0737	-	hypothetical protein
738	 60.60	0	858102..859997	-	631	158520755	-	Dole_0738	-	hypothetical protein
739	 55.71	0	861664..862950	-	428	158520756	-	Dole_0739	-	CRISPR-associated TIGR02710 family
740	 53.66	0	862978..864153	-	391	158520757	-	Dole_0740	-	CRISPR-associated RAMP Csm5 family protein
741	 57.77	0	864150..865082	-	310	158520758	-	Dole_0741	-	hypothetical protein
742	 55.69	0	865085..865813	-	242	158520759	-	Dole_0742	-	CRISPR-associated RAMP Csm3 family protein
743	 50.30	-1	865834..866328	-	164	158520760	-	Dole_0743	-	CRISPR-associated Csm2 family protein
744	 54.85	0	866347..868884	-	845	158520761	-	Dole_0744	-	CRISPR-associated Csm1 family protein
745	 56.01	0	868896..870002	-	368	158520762	-	Dole_0745	-	CRISPR-associated protein APE2256 family
746	 53.85	0	870439..871632	-	397	158520763	-	Dole_0746	-	CRISPR-associated NE0113 family protein
747	 56.64	0	871644..872561	-	305	158520764	-	Dole_0747	-	hypothetical protein
748	 60.23	0	872721..873512	-	263	158520765	-	Dole_0748	-	proto-chlorophyllide reductase 57 kD subunit
749	 57.70	0	873684..874508	-	274	158520766	-	Dole_0749	-	hydroxyethylthiazole kinase
750	 59.54	0	874533..874967	-	144	158520767	-	Dole_0750	-	MOSC domain-containing protein
751	 58.18	0	875173..875808	-	211	158520768	-	Dole_0751	-	methionine biosynthesis protein MetW
752	 60.20	0	875780..876955	-	391	158520769	-	Dole_0752	-	homoserine O-acetyltransferase
753	 61.59	0	876952..878211	-	419	158520770	-	Dole_0753	-	O-acetylhomoserine aminocarboxypropyltransferase
754	 58.23	0	878213..878674	-	153	158520771	-	Dole_0754	-	hypothetical protein
755	 56.70	0	878748..879269	+	173	158520772	-	Dole_0755	-	NifU domain-containing protein
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.