IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
442	 42.56	-2	511044..511238	+	64	158520459	-	Dole_0442	-	hypothetical protein
443	 41.74	-2	511235..511591	+	118	158520460	-	Dole_0443	-	HicB family protein
444	 50.68	0	511883..512101	+	72	158520461	-	Dole_0444	-	hypothetical protein
445	 30.51	-2	513192..513581	+	129	158520462	-	Dole_0445	-	hypothetical protein
446	 39.00	-2	513719..514300	+	193	158520463	-	Dole_0446	-	Cro-like protein
447	 41.88	-2	514385..514981	+	198	158520464	-	Dole_0447	-	hypothetical protein
448	 60.47	0	515117..517117	-	666	158520465	-	Dole_0448	-	exoribonuclease II
449	 56.13	0	517312..517833	+	173	158520466	-	Dole_0449	-	hypothetical protein
450	 55.49	0	517894..518922	+	342	158520467	-	Dole_0450	-	nitrate reductase gamma subunit
451	 58.06	0	518923..520572	+	549	158520468	-	Dole_0451	-	4Fe-4S ferredoxin, iron-sulfur binding
452	 51.79	0	520562..520951	+	129	158520469	-	Dole_0452	-	cytochrome c family protein
453	 60.79	0	520951..521784	+	277	158520470	-	Dole_0453	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
454	 58.29	0	521806..522975	+	389	158520471	-	Dole_0454	-	polysulphide reductase NrfD
455	 49.31	-1	523090..523884	-	264	158520472	-	Dole_0455	-	methyltransferase type 11
456	 58.66	0	523994..525079	-	361	158520473	-	Dole_0456	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
457	 56.84	0	525097..525717	-	206	158520474	-	Dole_0457	-	TetR family transcriptional regulator
458	 58.07	0	525875..526840	-	321	158520475	-	Dole_0458	-	methylenetetrahydrofolate reductase
459	 53.12	0	526887..527270	-	127	158520476	-	Dole_0459	-	hmc operon protein 6
460	 57.85	0	527316..527984	-	222	158520477	-	Dole_0460	-	hypothetical protein
461	 58.00	0	528005..528685	-	226	158520478	-	Dole_0461	-	hypothetical protein
462	 52.70	0	528716..529123	-	135	158520479	-	Dole_0462	-	cytochrome c class III
463	 51.89	0	529533..529850	+	105	158520480	-	Dole_0463	-	DsrC family protein
464	 56.29	0	529984..530436	+	150	158520481	-	Dole_0464	-	AsnC family transcriptional regulator
465	 62.64	+1	530470..531288	+	272	158520482	-	Dole_0465	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
466	 59.55	0	531264..532022	-	252	158520483	-	Dole_0466	-	tRNA pseudouridine synthase A
467	 63.22	+1	532231..533535	-	434	158520484	-	Dole_0467	-	FolC bifunctional protein
468	 48.31	-1	533608..533814	-	68	158520485	-	Dole_0468	-	ribosomal protein S21
469	 57.93	0	534043..534717	-	224	158520486	-	Dole_0469	-	adenylate kinase
470	 57.51	0	535141..536385	+	414	158520487	-	Dole_0470	-	transcription termination factor Rho
471	 55.86	0	536619..536840	+	73	158520488	-	Dole_0471	-	ribosomal protein L31
472	 59.85	0	536892..537962	+	356	158520489	-	Dole_0472	-	peptide chain release factor 1
473	 63.65	+1	537952..538845	+	297	158520490	-	Dole_0473	-	HemK family modification methylase
474	 58.03	0	539062..539976	+	304	158520491	-	Dole_0474	-	ribosomal protein S2
475	 57.62	0	540012..540608	+	198	158520492	-	Dole_0475	-	translation elongation factor Ts
476	 60.98	0	540612..541349	+	245	158520493	-	Dole_0476	-	uridylate kinase
477	 54.30	0	541391..541948	+	185	158520494	-	Dole_0477	-	ribosome recycling factor
478	 60.89	0	541938..542681	+	247	158520495	-	Dole_0478	-	undecaprenyl diphosphate synthase
479	 56.31	0	542702..543541	+	279	158520496	-	Dole_0479	-	phosphatidate cytidylyltransferase
480	 61.11	0	543538..544689	+	383	158520497	-	Dole_0480	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
481	 61.05	0	544794..545861	+	355	158520498	-	Dole_0481	-	putative membrane-associated zinc metalloprotease
482	 62.93	+1	545871..548867	+	998	158520499	-	Dole_0482	-	phosphoribosylformylglycinamidine synthase
483	 59.81	0	548864..549694	+	276	158520500	-	Dole_0483	-	phosphoribosylformylglycinamidine synthase
484	 61.26	0	549746..550966	+	406	158520501	-	Dole_0484	-	hypothetical protein
485	 54.70	0	551100..551726	-	208	158520502	-	Dole_0485	-	hypothetical protein
486	 57.34	0	552061..552564	+	167	158520503	-	Dole_0486	-	pilin assembly protein
487	 57.05	0	552575..553354	+	259	158520504	-	Dole_0487	-	Tfp pilus assembly protein PilW-like protein
488	 58.44	0	553377..553862	+	161	158520505	-	Dole_0488	-	hypothetical protein
489	 54.98	0	553859..554380	+	173	158520506	-	Dole_0489	-	hypothetical protein
490	 57.07	0	554441..559078	+	1545	158520507	-	Dole_0490	-	Pyrrolo-quinoline quinone
491	 52.98	0	559149..559484	+	111	158520508	-	Dole_0491	-	hypothetical protein
492	 58.63	0	559555..560400	-	281	158520509	-	Dole_0492	-	hydrolase
493	 60.60	0	560397..561797	-	466	158520510	-	Dole_0493	-	hypothetical protein
494	 57.79	0	562038..562634	-	198	158520511	-	Dole_0494	-	hypothetical protein
495	 58.29	0	562967..564208	+	413	158520512	-	Dole_0495	-	Ste24 endopeptidase
496	 59.97	0	564444..565130	-	228	158520513	-	Dole_0496	-	exsB protein
497	 59.94	0	565127..565765	-	212	158520514	-	Dole_0497	-	radical SAM domain-containing protein
498	 61.31	0	566726..567061	-	111	158520515	-	Dole_0498	-	preprotein translocase, SecG subunit
499	 61.24	0	567084..567839	-	251	158520516	-	Dole_0499	-	Triose-phosphate isomerase
500	 63.28	+1	568105..569109	-	334	158520517	-	Dole_0500	-	glyceraldehyde-3-phosphate dehydrogenase, type I
501	 58.81	0	569111..569581	-	156	158520518	-	Dole_0501	-	ribosomal-protein-alanine acetyltransferase
502	 52.52	0	569571..569987	-	138	158520519	-	Dole_0502	-	PTS system fructose subfamily IIA component
503	 56.58	0	569984..570865	-	293	158520520	-	Dole_0503	-	hypothetical protein
504	 59.26	0	570872..571330	-	152	158520521	-	Dole_0504	-	putative PTS IIA-like nitrogen-regulatory protein PtsN
505	 51.79	0	571510..571845	-	111	158520522	-	Dole_0505	-	sigma 54 modulation protein/ribosomal protein S30EA
506	 56.06	0	571857..573299	-	480	158520523	-	Dole_0506	-	RNA polymerase, sigma 54 subunit, RpoN
507	 62.52	+1	573301..574023	-	240	158520524	-	Dole_0507	-	ABC transporter-related protein
508	 57.96	0	574038..574634	-	198	158520525	-	Dole_0508	-	OstA family protein
509	 57.07	0	574634..575206	-	190	158520526	-	Dole_0509	-	hypothetical protein
510	 60.38	0	575231..575755	-	174	158520527	-	Dole_0510	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
511	 61.55	0	575748..576587	-	279	158520528	-	Dole_0511	-	2-dehydro-3-deoxyphosphooctonate aldolase
512	 58.74	0	576902..578263	+	453	158520529	-	Dole_0512	-	peptidase M23B
513	 59.60	0	578308..578958	+	216	158520530	-	Dole_0513	-	signal peptidase I
514	 61.11	0	578968..579903	+	311	158520531	-	Dole_0514	-	aspartate carbamoyltransferase
515	 63.18	+1	579890..581179	+	429	158520532	-	Dole_0515	-	dihydroorotase, multifunctional complex type
516	 57.64	0	581241..582647	+	468	158520533	-	Dole_0516	-	two component, sigma54 specific, Fis family transcriptional regulator
517	 54.61	0	583148..583603	+	151	158520534	-	Dole_0517	-	tfp pilus assembly protein, major pilin
518	 52.45	0	583988..585619	+	543	158520535	-	Dole_0518	-	dolichyl-phosphate-mannose-protein mannosyltransferase protein
519	 51.75	0	585640..586812	+	390	158520536	-	Dole_0519	-	vitamin K epoxide reductase
520	 58.52	0	586890..587945	+	351	158520537	-	Dole_0520	-	NAD-dependent epimerase/dehydratase
521	 51.85	0	587942..588670	+	242	158520538	-	Dole_0521	-	nucleotidyl transferase
522	 58.93	0	588680..589816	+	378	158520539	-	Dole_0522	-	glycosyl transferase group 1
523	 54.47	0	589813..590730	+	305	158520540	-	Dole_0523	-	NAD-dependent epimerase/dehydratase
524	 56.20	0	590753..591793	+	346	158520541	-	Dole_0524	-	glycosyl transferase family protein
525	 49.53	-1	591827..592684	+	285	158520542	-	Dole_0525	-	glycosyl transferase family protein
526	 52.13	0	592707..593600	-	297	158520543	-	Dole_0526	-	glycosyl transferase family protein
527	 48.92	-1	593651..594388	-	245	158520544	-	Dole_0527	-	FkbM family methyltransferase
528	 45.89	-1	594428..595534	-	368	158520545	-	Dole_0528	-	glycosyl transferase group 1
529	 49.14	-1	595556..596308	-	250	158520546	-	Dole_0529	-	hypothetical protein
530	 47.62	-1	596310..596960	-	216	158520547	-	Dole_0530	-	hypothetical protein
531	 48.87	-1	597174..598061	-	295	158520548	-	Dole_0531	-	methyltransferase type 11
532	 49.70	-1	598178..599527	-	449	158520549	-	Dole_0532	-	polysaccharide biosynthesis protein
533	 49.64	-1	599535..600086	-	183	158520550	-	Dole_0533	-	hypothetical protein
534	 56.07	0	600321..601037	-	238	158520551	-	Dole_0534	-	glycosyl transferase family protein
535	 53.42	0	601040..602005	-	321	158520552	-	Dole_0535	-	glycosyl transferase family protein
536	 55.28	0	602144..603961	+	605	158520553	-	Dole_0536	-	type II secretion system protein E
537	 54.18	0	604052..605236	-	394	158520554	-	Dole_0537	-	peptidoglycan-binding LysM
538	 60.18	0	605473..606258	-	261	158520555	-	Dole_0538	-	glutamate racemase
539	 57.96	0	606242..606712	-	156	158520556	-	Dole_0539	-	hypothetical protein
540	 60.50	0	606702..607301	-	199	158520557	-	Dole_0540	-	recombination protein RecR
541	 58.01	0	607301..607612	-	103	158520558	-	Dole_0541	-	hypothetical protein
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.