version 1.0
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167 3265 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 407 62.47 +1 467448..469235 - 595 158520424 - Dole_0407 - radical SAM domain-containing protein 408 58.61 0 469645..470103 + 152 158520425 - Dole_0408 - hypothetical protein 409 59.40 0 470225..471601 + 458 158520426 - Dole_0409 - hypothetical protein 410 52.08 0 471818..472009 + 63 158520427 - Dole_0410 - hypothetical protein 411 57.67 0 472016..472393 + 125 158520428 - Dole_0411 - PilT domain-containing protein 412 60.68 0 472786..474171 + 461 158520429 - Dole_0412 - magnesium transporter 413 64.44 +1 474524..475873 + 449 158520430 - Dole_0413 - MATE efflux family protein 414 61.59 0 476184..477779 + 531 158520431 - Dole_0414 - peptide chain release factor 3 415 63.17 +1 477923..479095 - 390 158520432 - Dole_0415 - filamentation induced by cAMP protein Fic 416 58.16 0 479304..480314 - 336 158520433 - Dole_0416 - filamentation induced by cAMP protein Fic 417 55.87 0 480667..482046 + 459 158520434 - Dole_0417 - magnesium transporter 418 48.87 -1 482231..482539 + 102 158520435 - Dole_0418 - hypothetical protein 419 49.11 -1 482627..483076 + 149 158520436 - Dole_0419 - hypothetical protein 420 53.19 0 483154..483702 + 182 158520437 - Dole_0420 - hypothetical protein 421 55.08 0 484267..486432 - 721 158520438 - Dole_0421 - heavy metal translocating P-type ATPase 422 49.31 -1 486450..487250 - 266 158520439 - Dole_0422 - metallophosphoesterase 423 52.52 0 487247..489253 - 668 158520440 - Dole_0423 - serine/threonine protein kinase 424 47.39 -1 489253..489558 - 101 158520441 - Dole_0424 - hypothetical protein 425 57.53 0 490042..490413 - 123 158520442 - Dole_0425 - zinc-resistance associated protein 426 52.14 0 490723..492519 + 598 158520443 - Dole_0426 - signal transduction histidine kinase, nitrogen specific, NtrB 427 52.65 0 492516..493892 + 458 158520444 - Dole_0427 - two component, sigma54 specific, Fis family transcriptional regulator 428 58.97 0 493970..494632 + 220 158520445 - Dole_0428 - peptidoglycan-binding LysM 429 52.74 0 494943..495416 + 157 158520446 - Dole_0429 - zinc-resistance associated protein 430 45.63 -1 495853..496218 + 121 158520447 - Dole_0430 - hypothetical protein 431 53.16 0 496237..497820 + 527 158520448 - Dole_0431 - Bilirubin oxidase 432 57.26 0 498097..499956 - 619 158520449 - Dole_0432 - type III restriction protein res subunit 433 55.72 0 499953..500756 - 267 158520450 - Dole_0433 - hypothetical protein 434 57.78 0 500753..502417 - 554 158520451 - Dole_0434 - alkaline phosphatase domain-containing protein 435 54.87 0 502435..503460 + 341 158520452 - Dole_0435 - hypothetical protein 436 64.04 +1 504223..505173 - 316 158520453 - Dole_0436 - hypothetical protein 437 59.39 0 505177..505959 - 260 158520454 - Dole_0437 - hypothetical protein 438 59.80 0 505956..506567 - 203 158520455 - Dole_0438 - hypothetical protein 439 58.29 0 506560..507633 - 357 158520456 - Dole_0439 - deoxyguanosinetriphosphate triphosphohydrolase-like protein 440 59.85 0 508158..510020 + 620 158520457 - Dole_0440 - thiamine pyrophosphate binding domain-containing protein 441 63.37 +1 510070..510675 + 201 158520458 - Dole_0441 - indolepyruvate ferredoxin oxidoreductase 442 42.56 -2 511044..511238 + 64 158520459 - Dole_0442 - hypothetical protein 443 41.74 -2 511235..511591 + 118 158520460 - Dole_0443 - HicB family protein 444 50.68 0 511883..512101 + 72 158520461 - Dole_0444 - hypothetical protein 445 30.51 -2 513192..513581 + 129 158520462 - Dole_0445 - hypothetical protein 446 39.00 -2 513719..514300 + 193 158520463 - Dole_0446 - Cro-like protein 447 41.88 -2 514385..514981 + 198 158520464 - Dole_0447 - hypothetical protein 448 60.47 0 515117..517117 - 666 158520465 - Dole_0448 - exoribonuclease II 449 56.13 0 517312..517833 + 173 158520466 - Dole_0449 - hypothetical protein 450 55.49 0 517894..518922 + 342 158520467 - Dole_0450 - nitrate reductase gamma subunit 451 58.06 0 518923..520572 + 549 158520468 - Dole_0451 - 4Fe-4S ferredoxin, iron-sulfur binding 452 51.79 0 520562..520951 + 129 158520469 - Dole_0452 - cytochrome c family protein 453 60.79 0 520951..521784 + 277 158520470 - Dole_0453 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 454 58.29 0 521806..522975 + 389 158520471 - Dole_0454 - polysulphide reductase NrfD 455 49.31 -1 523090..523884 - 264 158520472 - Dole_0455 - methyltransferase type 11 456 58.66 0 523994..525079 - 361 158520473 - Dole_0456 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 457 56.84 0 525097..525717 - 206 158520474 - Dole_0457 - TetR family transcriptional regulator 458 58.07 0 525875..526840 - 321 158520475 - Dole_0458 - methylenetetrahydrofolate reductase 459 53.12 0 526887..527270 - 127 158520476 - Dole_0459 - hmc operon protein 6 460 57.85 0 527316..527984 - 222 158520477 - Dole_0460 - hypothetical protein 461 58.00 0 528005..528685 - 226 158520478 - Dole_0461 - hypothetical protein 462 52.70 0 528716..529123 - 135 158520479 - Dole_0462 - cytochrome c class III 463 51.89 0 529533..529850 + 105 158520480 - Dole_0463 - DsrC family protein 464 56.29 0 529984..530436 + 150 158520481 - Dole_0464 - AsnC family transcriptional regulator 465 62.64 +1 530470..531288 + 272 158520482 - Dole_0465 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 466 59.55 0 531264..532022 - 252 158520483 - Dole_0466 - tRNA pseudouridine synthase A 467 63.22 +1 532231..533535 - 434 158520484 - Dole_0467 - FolC bifunctional protein 468 48.31 -1 533608..533814 - 68 158520485 - Dole_0468 - ribosomal protein S21 469 57.93 0 534043..534717 - 224 158520486 - Dole_0469 - adenylate kinase 470 57.51 0 535141..536385 + 414 158520487 - Dole_0470 - transcription termination factor Rho 471 55.86 0 536619..536840 + 73 158520488 - Dole_0471 - ribosomal protein L31 472 59.85 0 536892..537962 + 356 158520489 - Dole_0472 - peptide chain release factor 1 473 63.65 +1 537952..538845 + 297 158520490 - Dole_0473 - HemK family modification methylase 474 58.03 0 539062..539976 + 304 158520491 - Dole_0474 - ribosomal protein S2 475 57.62 0 540012..540608 + 198 158520492 - Dole_0475 - translation elongation factor Ts 476 60.98 0 540612..541349 + 245 158520493 - Dole_0476 - uridylate kinase 477 54.30 0 541391..541948 + 185 158520494 - Dole_0477 - ribosome recycling factor 478 60.89 0 541938..542681 + 247 158520495 - Dole_0478 - undecaprenyl diphosphate synthase 479 56.31 0 542702..543541 + 279 158520496 - Dole_0479 - phosphatidate cytidylyltransferase 480 61.11 0 543538..544689 + 383 158520497 - Dole_0480 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 481 61.05 0 544794..545861 + 355 158520498 - Dole_0481 - putative membrane-associated zinc metalloprotease 482 62.93 +1 545871..548867 + 998 158520499 - Dole_0482 - phosphoribosylformylglycinamidine synthase 483 59.81 0 548864..549694 + 276 158520500 - Dole_0483 - phosphoribosylformylglycinamidine synthase 484 61.26 0 549746..550966 + 406 158520501 - Dole_0484 - hypothetical protein 485 54.70 0 551100..551726 - 208 158520502 - Dole_0485 - hypothetical protein 486 57.34 0 552061..552564 + 167 158520503 - Dole_0486 - pilin assembly protein 487 57.05 0 552575..553354 + 259 158520504 - Dole_0487 - Tfp pilus assembly protein PilW-like protein 488 58.44 0 553377..553862 + 161 158520505 - Dole_0488 - hypothetical protein 489 54.98 0 553859..554380 + 173 158520506 - Dole_0489 - hypothetical protein 490 57.07 0 554441..559078 + 1545 158520507 - Dole_0490 - Pyrrolo-quinoline quinone 491 52.98 0 559149..559484 + 111 158520508 - Dole_0491 - hypothetical protein 492 58.63 0 559555..560400 - 281 158520509 - Dole_0492 - hydrolase 493 60.60 0 560397..561797 - 466 158520510 - Dole_0493 - hypothetical protein 494 57.79 0 562038..562634 - 198 158520511 - Dole_0494 - hypothetical protein 495 58.29 0 562967..564208 + 413 158520512 - Dole_0495 - Ste24 endopeptidase 496 59.97 0 564444..565130 - 228 158520513 - Dole_0496 - exsB protein 497 59.94 0 565127..565765 - 212 158520514 - Dole_0497 - radical SAM domain-containing protein 498 61.31 0 566726..567061 - 111 158520515 - Dole_0498 - preprotein translocase, SecG subunit 499 61.24 0 567084..567839 - 251 158520516 - Dole_0499 - Triose-phosphate isomerase 500 63.28 +1 568105..569109 - 334 158520517 - Dole_0500 - glyceraldehyde-3-phosphate dehydrogenase, type I 501 58.81 0 569111..569581 - 156 158520518 - Dole_0501 - ribosomal-protein-alanine acetyltransferase 502 52.52 0 569571..569987 - 138 158520519 - Dole_0502 - PTS system fructose subfamily IIA component 503 56.58 0 569984..570865 - 293 158520520 - Dole_0503 - hypothetical protein 504 59.26 0 570872..571330 - 152 158520521 - Dole_0504 - putative PTS IIA-like nitrogen-regulatory protein PtsN 505 51.79 0 571510..571845 - 111 158520522 - Dole_0505 - sigma 54 modulation protein/ribosomal protein S30EA 506 56.06 0 571857..573299 - 480 158520523 - Dole_0506 - RNA polymerase, sigma 54 subunit, RpoN 56.47 MEAN 5.93 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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