IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
314	 58.08	0	359227..361020	-	597	158520331	-	Dole_0314	-	AMP-dependent synthetase and ligase
315	 62.07	0	361148..361930	-	260	158520332	-	Dole_0315	-	TatD family hydrolase
316	 59.29	0	362111..362950	+	279	158520333	-	Dole_0316	-	ferredoxin--NADP(+) reductase subunit alpha
317	 62.70	+1	362964..364373	+	469	158520334	-	Dole_0317	-	glutamate synthase (NADPH), homotetrameric
318	 56.60	0	364570..364887	-	105	158520335	-	Dole_0318	-	NifU domain-containing protein
319	 54.76	0	365131..365466	+	111	158520336	-	Dole_0319	-	hypothetical protein
320	 61.88	0	365851..366351	-	166	158520337	-	Dole_0320	-	hypothetical protein
321	 58.84	0	366345..366842	-	165	158520338	-	Dole_0321	-	signal peptidase I
322	 57.55	0	367112..368317	+	401	158520339	-	Dole_0322	-	TPR repeat-containing protein
323	 59.62	0	368475..369113	+	212	158520340	-	Dole_0323	-	TPR repeat-containing protein
324	 64.27	+1	369395..369853	-	152	158520341	-	Dole_0324	-	phosphodiesterase
325	 62.11	0	370335..371519	+	394	158520342	-	Dole_0325	-	diguanylate cyclase
326	 53.76	0	371538..372149	-	203	158520343	-	Dole_0326	-	antibiotic biosynthesis monooxygenase
327	 58.89	0	373133..374032	+	299	158520344	-	Dole_0327	-	exopolyphosphatase-related protein
328	 58.64	0	374161..376653	-	830	158520345	-	Dole_0328	-	Ig domain-containing protein
329	 59.01	0	376692..379655	-	987	158520346	-	Dole_0329	-	type IV pilus secretin PilQ
330	 59.63	0	379659..380639	-	326	158520347	-	Dole_0330	-	hypothetical protein
331	 50.47	-1	380636..381271	-	211	158520348	-	Dole_0331	-	pilus assembly protein PilO
332	 51.93	0	381283..381825	-	180	158520349	-	Dole_0332	-	fimbrial assembly family protein
333	 52.18	0	381822..382877	-	351	158520350	-	Dole_0333	-	type IV pilus assembly protein PilM
334	 52.29	0	382887..383039	-	50	158520351	-	Dole_0334	-	XRE family transcriptional regulator
335	 64.19	+1	383454..384140	+	228	158520352	-	Dole_0335	-	hypothetical protein
336	 57.00	0	384318..385310	-	330	158520353	-	Dole_0336	-	beta-lactamase domain-containing protein
337	 59.63	0	385983..387716	+	577	158520354	-	Dole_0337	-	AMP-dependent synthetase and ligase
338	 52.80	0	388370..388780	-	136	158520355	-	Dole_0338	-	hypothetical protein
339	 60.66	0	388984..390264	+	426	158520356	-	Dole_0339	-	phosphopyruvate hydratase
340	 59.57	0	390277..391122	+	281	158520357	-	Dole_0340	-	hypothetical protein
341	 60.29	0	391138..392799	+	553	158520358	-	Dole_0341	-	CTP synthetase
342	 58.68	0	392810..393523	+	237	158520359	-	Dole_0342	-	ferric uptake regulator family protein
343	 56.96	0	393693..393929	+	78	158520360	-	Dole_0343	-	FeoA family protein
344	 58.90	0	393936..396110	+	724	158520361	-	Dole_0344	-	ferrous iron transport protein B
345	 47.85	-1	396241..396867	+	208	158520362	-	Dole_0345	-	metallophosphoesterase
346	 55.56	0	396889..397338	+	149	158520363	-	Dole_0346	-	hypothetical protein
347	 61.61	0	397460..398983	-	507	158520364	-	Dole_0347	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
348	 62.51	+1	399063..399977	-	304	158520365	-	Dole_0348	-	hypothetical protein
349	 58.40	0	400007..401977	-	656	158520366	-	Dole_0349	-	cyclopropane-fatty-acyl-phospholipid synthase
350	 59.59	0	401974..403245	-	423	158520367	-	Dole_0350	-	amine oxidase
351	 55.72	0	403266..403676	-	136	158520368	-	Dole_0351	-	hypothetical protein
352	 58.91	0	403690..404475	-	261	158520369	-	Dole_0352	-	hypothetical protein
353	 60.72	0	404494..405888	-	464	158520370	-	Dole_0353	-	major facilitator transporter
354	 56.68	0	405885..406475	-	196	158520371	-	Dole_0354	-	hypothetical protein
355	 51.28	0	406920..407231	+	103	158520372	-	Dole_0355	-	hypothetical protein
356	 59.89	0	407493..408407	+	304	158520373	-	Dole_0356	-	ArsR family transcriptional regulator
357	 58.23	0	408827..410095	+	422	158520374	-	Dole_0357	-	adenosylhomocysteinase
358	 58.76	0	410474..411991	+	505	158520375	-	Dole_0358	-	apolipoprotein N-acyltransferase
359	 58.17	0	411968..413062	-	364	158520376	-	Dole_0359	-	hypothetical protein
360	 56.33	0	413137..414036	-	299	158520377	-	Dole_0360	-	alpha/beta fold family hydrolase
361	 55.08	0	414248..416293	+	681	158520378	-	Dole_0361	-	Fis family transcriptional regulator
362	 65.44	+1	416327..417550	+	407	158520379	-	Dole_0362	-	major facilitator transporter
363	 53.76	0	417621..420425	-	934	158520380	-	Dole_0363	-	parallel beta-helix repeat-containing protein
364	 57.04	0	420485..421813	-	442	158520381	-	Dole_0364	-	hypothetical protein
365	 58.16	0	422177..423046	+	289	158520382	-	Dole_0365	-	radical SAM domain-containing protein
366	 56.48	0	423151..423582	+	143	158520383	-	Dole_0366	-	S23 ribosomal protein
367	 60.52	0	423656..425671	+	671	158520384	-	Dole_0367	-	transketolase
368	 60.39	0	425698..426462	+	254	158520385	-	Dole_0368	-	methyltransferase type 11
369	 59.22	0	426552..427478	-	308	158520386	-	Dole_0369	-	DNA binding domain-containing protein
370	 57.23	0	427693..428667	+	324	158520387	-	Dole_0370	-	phosphoesterase domain-containing protein
371	 59.38	0	428881..429621	-	246	158520388	-	Dole_0371	-	hypothetical protein
372	 55.13	0	429608..430231	-	207	158520389	-	Dole_0372	-	ribosomal RNA methyltransferase RrmJ/FtsJ
373	 64.46	+1	430413..431771	-	452	158520390	-	Dole_0373	-	DNA repair protein RadA
374	 57.33	0	432109..432783	+	224	158520391	-	Dole_0374	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
375	 57.87	0	432755..433345	+	196	158520392	-	Dole_0375	-	nitroreductase
376	 57.79	0	433422..435371	+	649	158520393	-	Dole_0376	-	phosphoenolpyruvate carboxykinase
377	 57.86	0	435563..437083	+	506	158520394	-	Dole_0377	-	major facilitator transporter
378	 58.84	0	437232..438944	+	570	158520395	-	Dole_0378	-	hypothetical protein
379	 61.54	0	439399..440295	-	298	158520396	-	Dole_0379	-	quinolinate synthetase complex, A subunit
380	 56.67	0	440292..440981	-	229	158520397	-	Dole_0380	-	outer membrane lipoprotein carrier protein LolA
381	 61.39	0	441315..441731	+	138	158520398	-	Dole_0381	-	hypothetical protein
382	 46.67	-1	441735..441929	+	64	158520399	-	Dole_0382	-	hypothetical protein
383	 60.67	0	442006..443739	+	577	158520400	-	Dole_0383	-	hydroxymethylbutenyl pyrophosphate reductase
384	 63.17	+1	444062..444691	-	209	158520401	-	Dole_0384	-	hypothetical protein
385	 59.30	0	444930..445187	+	85	158520402	-	Dole_0385	-	Smr protein/MutS2
386	 58.02	0	445209..445601	+	130	158520403	-	Dole_0386	-	thioesterase superfamily protein
387	 56.28	0	445891..446073	-	60	158520404	-	Dole_0387	-	hypothetical protein
388	 53.78	0	446410..447612	+	400	158520405	-	Dole_0388	-	nicotinate phosphoribosyltransferase
389	 57.11	0	447704..448603	+	299	158520406	-	Dole_0389	-	membrane-bound lytic murein transglycosylase B-like protein
390	 61.19	0	448625..448843	+	72	158520407	-	Dole_0390	-	hypothetical protein
391	 60.44	0	448840..449562	+	240	158520408	-	Dole_0391	-	biotin--acetyl-CoA-carboxylase ligase
392	 59.86	0	450466..452979	+	837	158520409	-	Dole_0392	-	exporter of the RND superfamily protein-like protein
393	 52.60	0	453039..453884	+	281	158520410	-	Dole_0393	-	hypothetical protein
394	 61.50	0	453936..455579	+	547	158520411	-	Dole_0394	-	GH3 auxin-responsive promoter
395	 58.30	0	455692..457065	+	457	158520412	-	Dole_0395	-	hypothetical protein
396	 55.00	0	457317..458156	+	279	158520413	-	Dole_0396	-	hypothetical protein
397	 58.57	0	458313..458954	+	213	158520414	-	Dole_0397	-	hypothetical protein
398	 61.73	0	459063..459893	-	276	158520415	-	Dole_0398	-	aldo/keto reductase family oxidoreductase
399	 61.64	0	460029..461102	+	357	158520416	-	Dole_0399	-	FAD dependent oxidoreductase
400	 60.73	0	461188..462096	+	302	158520417	-	Dole_0400	-	periplasmic solute binding protein
401	 61.76	0	462093..462866	+	257	158520418	-	Dole_0401	-	ABC transporter-related protein
402	 62.65	+1	462871..463692	+	273	158520419	-	Dole_0402	-	ABC-3 protein
403	 50.15	-1	464078..464404	-	108	158520420	-	Dole_0403	-	hypothetical protein
404	 62.73	+1	464425..465897	-	490	158520421	-	Dole_0404	-	methyltransferase GidB
405	 63.58	+1	465921..466697	+	258	158520422	-	Dole_0405	-	pseudouridine synthase
406	 61.09	0	466691..467569	+	292	158520423	-	Dole_0406	-	hypothetical protein
407	 62.47	+1	467448..469235	-	595	158520424	-	Dole_0407	-	radical SAM domain-containing protein
408	 58.61	0	469645..470103	+	152	158520425	-	Dole_0408	-	hypothetical protein
409	 59.40	0	470225..471601	+	458	158520426	-	Dole_0409	-	hypothetical protein
410	 52.08	0	471818..472009	+	63	158520427	-	Dole_0410	-	hypothetical protein
411	 57.67	0	472016..472393	+	125	158520428	-	Dole_0411	-	PilT domain-containing protein
412	 60.68	0	472786..474171	+	461	158520429	-	Dole_0412	-	magnesium transporter
413	 64.44	+1	474524..475873	+	449	158520430	-	Dole_0413	-	MATE efflux family protein
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.