IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
276	 49.94	-1	316441..318150	+	569	158520293	-	Dole_0276	-	N-6 DNA methylase
277	 42.59	-2	318150..319391	+	413	158520294	-	Dole_0277	-	restriction modification system DNA specificity subunit
278	 48.99	-1	319388..322357	+	989	158520295	-	Dole_0278	-	hypothetical protein
279	 43.49	-2	322487..323608	+	373	158520296	-	Dole_0279	-	hypothetical protein
280	 42.88	-2	323605..324348	+	247	158520297	-	Dole_0280	-	Gp37Gp68 family protein
281	 53.37	0	325517..326140	+	207	158520298	-	Dole_0281	-	hypothetical protein
282	 52.38	0	326227..327066	+	279	158520299	-	Dole_0282	-	hypothetical protein
283	 52.35	0	327183..328139	+	318	158520300	-	Dole_0283	-	hypothetical protein
284	 45.31	-1	328213..328404	+	63	158520301	-	Dole_0284	-	hypothetical protein
285	 49.40	-1	328431..328598	+	55	158520302	-	Dole_0285	-	hypothetical protein
286	 52.60	0	328964..329290	+	108	158520303	-	Dole_0286	-	HIRAN
287	 48.68	-1	329447..330964	+	505	158520304	-	Dole_0287	-	hypothetical protein
288	 45.13	-1	331373..332584	+	403	158520305	-	Dole_0288	-	integrase family protein
289	 60.58	0	332755..333066	-	103	158520306	-	Dole_0289	-	hypothetical protein
290	 57.92	0	333067..333672	-	201	158520307	-	Dole_0290	-	phosphoserine phosphatase
291	 61.20	0	333695..335011	-	438	158520308	-	Dole_0291	-	homoserine dehydrogenase
292	 57.82	0	335021..336196	-	391	158520309	-	Dole_0292	-	aminotransferase class I and II
293	 57.06	0	336565..337605	+	346	158520310	-	Dole_0293	-	phosphoribosylformylglycinamidine cyclo-ligase
294	 63.07	+1	337944..339026	+	360	158520311	-	Dole_0294	-	metalloendopeptidase glycoprotease family
295	 62.02	0	339512..340543	-	343	158520312	-	Dole_0295	-	Beta-N-acetylhexosaminidase
296	 60.63	0	340580..341374	-	264	158520313	-	Dole_0296	-	hypothetical protein
297	 54.05	0	341403..342242	-	279	158520314	-	Dole_0297	-	FkbM family methyltransferase
298	 59.04	0	342744..343412	+	222	158520315	-	Dole_0298	-	hydrogenase accessory protein HypB
299	 62.43	+1	343453..344301	+	282	158520316	-	Dole_0299	-	hypothetical protein
300	 61.80	0	344402..345388	+	328	158520317	-	Dole_0300	-	iron-sulfur cluster-binding protein
301	 56.99	0	345388..345852	+	154	158520318	-	Dole_0301	-	hypothetical protein
302	 56.10	0	346015..347349	-	444	158520319	-	Dole_0302	-	hypothetical protein
303	 56.05	0	347399..348076	-	225	158520320	-	Dole_0303	-	hypothetical protein
304	 59.18	0	348093..349361	-	422	158520321	-	Dole_0304	-	hypothetical protein
305	 60.32	0	349426..350103	-	225	158520322	-	Dole_0305	-	cytochrome c class III
306	 62.42	+1	350375..351739	+	454	158520323	-	Dole_0306	-	electron transport complex, RnfABCDGE type, C subunit
307	 63.21	+1	351770..352783	+	337	158520324	-	Dole_0307	-	electron transport complex, RnfABCDGE type, D subunit
308	 56.33	0	352828..353427	+	199	158520325	-	Dole_0308	-	FMN-binding domain-containing protein
309	 57.53	0	353467..354090	+	207	158520326	-	Dole_0309	-	RnfA-Nqr electron transport subunit
310	 56.64	0	354109..354876	+	255	158520327	-	Dole_0310	-	RnfA-Nqr electron transport subunit
311	 62.39	0	354914..355825	+	303	158520328	-	Dole_0311	-	electron transport complex, RnfABCDGE type, B subunit
312	 49.35	-1	356308..356538	+	76	158520329	-	Dole_0312	-	hypothetical protein
313	 62.42	+1	356639..358735	+	698	158520330	-	Dole_0313	-	molybdopterin oxidoreductase
314	 58.08	0	359227..361020	-	597	158520331	-	Dole_0314	-	AMP-dependent synthetase and ligase
315	 62.07	0	361148..361930	-	260	158520332	-	Dole_0315	-	TatD family hydrolase
316	 59.29	0	362111..362950	+	279	158520333	-	Dole_0316	-	ferredoxin--NADP(+) reductase subunit alpha
317	 62.70	+1	362964..364373	+	469	158520334	-	Dole_0317	-	glutamate synthase (NADPH), homotetrameric
318	 56.60	0	364570..364887	-	105	158520335	-	Dole_0318	-	NifU domain-containing protein
319	 54.76	0	365131..365466	+	111	158520336	-	Dole_0319	-	hypothetical protein
320	 61.88	0	365851..366351	-	166	158520337	-	Dole_0320	-	hypothetical protein
321	 58.84	0	366345..366842	-	165	158520338	-	Dole_0321	-	signal peptidase I
322	 57.55	0	367112..368317	+	401	158520339	-	Dole_0322	-	TPR repeat-containing protein
323	 59.62	0	368475..369113	+	212	158520340	-	Dole_0323	-	TPR repeat-containing protein
324	 64.27	+1	369395..369853	-	152	158520341	-	Dole_0324	-	phosphodiesterase
325	 62.11	0	370335..371519	+	394	158520342	-	Dole_0325	-	diguanylate cyclase
326	 53.76	0	371538..372149	-	203	158520343	-	Dole_0326	-	antibiotic biosynthesis monooxygenase
327	 58.89	0	373133..374032	+	299	158520344	-	Dole_0327	-	exopolyphosphatase-related protein
328	 58.64	0	374161..376653	-	830	158520345	-	Dole_0328	-	Ig domain-containing protein
329	 59.01	0	376692..379655	-	987	158520346	-	Dole_0329	-	type IV pilus secretin PilQ
330	 59.63	0	379659..380639	-	326	158520347	-	Dole_0330	-	hypothetical protein
331	 50.47	-1	380636..381271	-	211	158520348	-	Dole_0331	-	pilus assembly protein PilO
332	 51.93	0	381283..381825	-	180	158520349	-	Dole_0332	-	fimbrial assembly family protein
333	 52.18	0	381822..382877	-	351	158520350	-	Dole_0333	-	type IV pilus assembly protein PilM
334	 52.29	0	382887..383039	-	50	158520351	-	Dole_0334	-	XRE family transcriptional regulator
335	 64.19	+1	383454..384140	+	228	158520352	-	Dole_0335	-	hypothetical protein
336	 57.00	0	384318..385310	-	330	158520353	-	Dole_0336	-	beta-lactamase domain-containing protein
337	 59.63	0	385983..387716	+	577	158520354	-	Dole_0337	-	AMP-dependent synthetase and ligase
338	 52.80	0	388370..388780	-	136	158520355	-	Dole_0338	-	hypothetical protein
339	 60.66	0	388984..390264	+	426	158520356	-	Dole_0339	-	phosphopyruvate hydratase
340	 59.57	0	390277..391122	+	281	158520357	-	Dole_0340	-	hypothetical protein
341	 60.29	0	391138..392799	+	553	158520358	-	Dole_0341	-	CTP synthetase
342	 58.68	0	392810..393523	+	237	158520359	-	Dole_0342	-	ferric uptake regulator family protein
343	 56.96	0	393693..393929	+	78	158520360	-	Dole_0343	-	FeoA family protein
344	 58.90	0	393936..396110	+	724	158520361	-	Dole_0344	-	ferrous iron transport protein B
345	 47.85	-1	396241..396867	+	208	158520362	-	Dole_0345	-	metallophosphoesterase
346	 55.56	0	396889..397338	+	149	158520363	-	Dole_0346	-	hypothetical protein
347	 61.61	0	397460..398983	-	507	158520364	-	Dole_0347	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
348	 62.51	+1	399063..399977	-	304	158520365	-	Dole_0348	-	hypothetical protein
349	 58.40	0	400007..401977	-	656	158520366	-	Dole_0349	-	cyclopropane-fatty-acyl-phospholipid synthase
350	 59.59	0	401974..403245	-	423	158520367	-	Dole_0350	-	amine oxidase
351	 55.72	0	403266..403676	-	136	158520368	-	Dole_0351	-	hypothetical protein
352	 58.91	0	403690..404475	-	261	158520369	-	Dole_0352	-	hypothetical protein
353	 60.72	0	404494..405888	-	464	158520370	-	Dole_0353	-	major facilitator transporter
354	 56.68	0	405885..406475	-	196	158520371	-	Dole_0354	-	hypothetical protein
355	 51.28	0	406920..407231	+	103	158520372	-	Dole_0355	-	hypothetical protein
356	 59.89	0	407493..408407	+	304	158520373	-	Dole_0356	-	ArsR family transcriptional regulator
357	 58.23	0	408827..410095	+	422	158520374	-	Dole_0357	-	adenosylhomocysteinase
358	 58.76	0	410474..411991	+	505	158520375	-	Dole_0358	-	apolipoprotein N-acyltransferase
359	 58.17	0	411968..413062	-	364	158520376	-	Dole_0359	-	hypothetical protein
360	 56.33	0	413137..414036	-	299	158520377	-	Dole_0360	-	alpha/beta fold family hydrolase
361	 55.08	0	414248..416293	+	681	158520378	-	Dole_0361	-	Fis family transcriptional regulator
362	 65.44	+1	416327..417550	+	407	158520379	-	Dole_0362	-	major facilitator transporter
363	 53.76	0	417621..420425	-	934	158520380	-	Dole_0363	-	parallel beta-helix repeat-containing protein
364	 57.04	0	420485..421813	-	442	158520381	-	Dole_0364	-	hypothetical protein
365	 58.16	0	422177..423046	+	289	158520382	-	Dole_0365	-	radical SAM domain-containing protein
366	 56.48	0	423151..423582	+	143	158520383	-	Dole_0366	-	S23 ribosomal protein
367	 60.52	0	423656..425671	+	671	158520384	-	Dole_0367	-	transketolase
368	 60.39	0	425698..426462	+	254	158520385	-	Dole_0368	-	methyltransferase type 11
369	 59.22	0	426552..427478	-	308	158520386	-	Dole_0369	-	DNA binding domain-containing protein
370	 57.23	0	427693..428667	+	324	158520387	-	Dole_0370	-	phosphoesterase domain-containing protein
371	 59.38	0	428881..429621	-	246	158520388	-	Dole_0371	-	hypothetical protein
372	 55.13	0	429608..430231	-	207	158520389	-	Dole_0372	-	ribosomal RNA methyltransferase RrmJ/FtsJ
373	 64.46	+1	430413..431771	-	452	158520390	-	Dole_0373	-	DNA repair protein RadA
374	 57.33	0	432109..432783	+	224	158520391	-	Dole_0374	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
375	 57.87	0	432755..433345	+	196	158520392	-	Dole_0375	-	nitroreductase
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.