IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3164	 55.43	0	3798675..3799448	-	257	158523181	-	Dole_3171	-	Sec-independent protein translocase, TatC subunit
3165	 65.58	+1	3799441..3799809	-	122	158523182	-	Dole_3172	-	twin arginine-targeting protein translocase
3166	 53.46	0	3799851..3800327	-	158	158523183	-	Dole_3173	-	molybdenum cofactor biosynthesis protein C
3167	 61.43	0	3800373..3800735	-	120	158523184	-	Dole_3174	-	protein involved in biosynthesis of molybdopterin
3168	 58.46	0	3800807..3801415	-	202	158523185	-	Dole_3175	-	molybdopterin-guanine dinucleotide biosynthesis protein A
3169	 55.64	0	3801699..3802106	+	135	158523186	-	Dole_3176	-	type IV pilus assembly PilZ
3170	 60.00	0	3802245..3802799	+	184	158523187	-	Dole_3177	-	orotate phosphoribosyltransferase
3171	 60.45	0	3802913..3804649	+	578	158523188	-	Dole_3178	-	histone deacetylase superfamily protein
3172	 60.45	0	3804788..3805366	+	192	158523189	-	Dole_3179	-	protein tyrosine/serine phosphatase
3173	 62.34	0	3805424..3807940	+	838	158523190	-	Dole_3180	-	TrkA domain-containing protein
3174	 58.41	0	3807992..3810001	-	669	158523191	-	Dole_3181	-	chloride channel core
3175	 57.74	0	3810565..3811449	-	294	158523192	-	Dole_3182	-	dihydropteroate synthase DHPS
3176	 59.06	0	3811515..3812855	-	446	158523193	-	Dole_3183	-	acetyl-CoA decarbonylase/synthase complex subunit gamma
3177	 59.02	0	3812941..3815151	-	736	158523194	-	Dole_3184	-	bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta
3178	 59.51	0	3815197..3817236	-	679	158523195	-	Dole_3185	-	carbon-monoxide dehydrogenase, catalytic subunit
3179	 60.69	0	3817320..3818876	-	518	158523196	-	Dole_3186	-	acetyl-CoA decarbonylase/synthase complex subunit delta
3180	 61.57	0	3819308..3820111	-	267	158523197	-	Dole_3187	-	fructose-bisphosphate aldolase
3181	 58.38	0	3820509..3821498	-	329	158523198	-	Dole_3188	-	radical SAM domain-containing protein
3182	 59.75	0	3821679..3822242	-	187	158523199	-	Dole_3189	-	methyltransferase type 11
3183	 63.70	+1	3822406..3823011	-	201	158523200	-	Dole_3190	-	alpha/beta hydrolase family protein
3184	 63.88	+1	3823134..3824282	-	382	158523201	-	Dole_3191	-	3'-5' exonuclease
3185	 59.73	0	3824315..3824833	-	172	158523202	-	Dole_3192	-	hypothetical protein
3186	 59.04	0	3824851..3826239	-	462	158523203	-	Dole_3193	-	diguanylate cyclase
3187	 59.93	0	3826390..3828303	+	637	158523204	-	Dole_3194	-	threonyl-tRNA synthetase
3188	 61.90	0	3828345..3828890	+	181	158523205	-	Dole_3195	-	Uracil phosphoribosyltransferase
3189	 61.90	0	3829061..3829564	+	167	158523206	-	Dole_3196	-	molybdenum cofactor synthesis domain-containing protein
3190	 32.58	-2	3829885..3830283	+	132	158523207	-	Dole_3197	-	hypothetical protein
3191	 59.70	0	3830450..3832027	+	525	158523208	-	Dole_3198	-	AMP-dependent synthetase and ligase
3192	 45.52	-1	3832020..3832298	-	92	158523209	-	Dole_3199	-	hypothetical protein
3193	 61.15	0	3832362..3832760	-	132	158523210	-	Dole_3200	-	hypothetical protein
3194	 61.32	0	3832753..3836325	-	1190	158523211	-	Dole_3201	-	glutamine--fructose-6-phosphate transaminase (isomerizing)
3195	 59.89	0	3836350..3837411	-	353	158523212	-	Dole_3202	-	iron-containing alcohol dehydrogenase
3196	 61.11	0	3837422..3838609	-	395	158523213	-	Dole_3203	-	DegT/DnrJ/EryC1/StrS aminotransferase
3197	 60.53	0	3838810..3840732	-	640	158523214	-	Dole_3204	-	methionyl-tRNA synthetase
3198	 56.73	0	3840751..3841605	-	284	158523215	-	Dole_3205	-	PSP1 domain-containing protein
3199	 61.76	0	3841602..3842600	-	332	158523216	-	Dole_3206	-	DNA polymerase III, delta prime subunit
3200	 52.17	0	3842626..3842901	-	91	158523217	-	Dole_3207	-	histone family protein DNA-binding protein
3201	 59.92	0	3843057..3845456	-	799	158523218	-	Dole_3208	-	organic solvent tolerance protein
3202	 63.53	+1	3845848..3847218	+	456	158523219	-	Dole_3209	-	hypothetical protein
3203	 54.30	0	3847859..3848731	+	290	158523220	-	Dole_3210	-	4-hydroxybenzoate polyprenyltransferase, putative
3204	 62.50	+1	3848728..3849327	+	199	158523221	-	Dole_3211	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
3205	 59.78	0	3849320..3851104	+	594	158523222	-	Dole_3212	-	UbiD family decarboxylase
3206	 55.01	0	3851179..3851667	+	162	158523223	-	Dole_3213	-	type IV pilus assembly PilZ
3207	 60.22	0	3851895..3852545	-	216	158523224	-	Dole_3214	-	sporulation domain-containing protein
3208	 61.58	0	3852698..3854368	-	556	158523225	-	Dole_3215	-	arginyl-tRNA synthetase
3209	 56.03	0	3854398..3854820	-	140	158523226	-	Dole_3216	-	hypothetical protein
3210	 57.83	0	3854946..3856394	-	482	158523227	-	Dole_3217	-	TrkH family potassium uptake protein
3211	 58.68	0	3856395..3857759	-	454	158523228	-	Dole_3218	-	potassium transporter peripheral membrane component
3212	 60.97	0	3857930..3858736	-	268	158523229	-	Dole_3219	-	hexapaptide repeat-containing transferase
3213	 61.81	0	3858729..3859778	-	349	158523230	-	Dole_3220	-	hypothetical protein
3214	 56.81	0	3859848..3860933	-	361	158523231	-	Dole_3221	-	phosphoserine aminotransferase
3215	 63.07	+1	3861059..3862363	+	434	158523232	-	Dole_3222	-	histidinol dehydrogenase
3216	 56.69	0	3862378..3864162	-	594	158523233	-	Dole_3223	-	histidine kinase
3217	 55.61	0	3864306..3864974	-	222	158523234	-	Dole_3224	-	hypothetical protein
3218	 59.39	0	3864984..3866219	-	411	158523235	-	Dole_3225	-	phosphate transporter
3219	 62.70	+1	3867249..3868988	+	579	158523236	-	Dole_3226	-	ABC transporter-related protein
3220	 59.96	0	3868985..3871012	+	675	158523237	-	Dole_3227	-	ABC transporter-related protein
3221	 62.04	0	3871361..3872182	-	273	158523238	-	Dole_3228	-	silent information regulator protein Sir2
3222	 65.74	+1	3872216..3873397	-	393	158523239	-	Dole_3229	-	hypothetical protein
3223	 62.50	+1	3873457..3874440	-	327	158523240	-	Dole_3230	-	polyprenyl synthetase
3224	 64.17	+1	3874437..3875759	-	440	158523241	-	Dole_3231	-	MiaB-like tRNA modifying enzyme YliG
3225	 60.61	0	3875761..3876585	-	274	158523242	-	Dole_3232	-	enoyl-CoA hydratase/isomerase
3226	 60.97	0	3876779..3877813	-	344	158523243	-	Dole_3233	-	ApbE family lipoprotein
3227	 64.23	+1	3878000..3878944	+	314	158523244	-	Dole_3234	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
3228	 61.24	0	3878941..3879732	+	263	158523245	-	Dole_3235	-	beta-lactamase domain-containing protein
3229	 56.11	0	3879729..3880391	+	220	158523246	-	Dole_3236	-	siroheme synthase
3230	 60.00	0	3880500..3881339	+	279	158523247	-	Dole_3237	-	cytochrome c assembly protein
3231	 60.21	0	3881336..3882652	+	438	158523248	-	Dole_3238	-	glutamyl-tRNA reductase
3232	 60.86	0	3883103..3884548	-	481	158523249	-	Dole_3239	-	sigma-54 dependent trancsriptional regulator
3233	 56.51	0	3884882..3885403	+	173	158523250	-	Dole_3240	-	hypothetical protein
3234	 57.05	0	3885660..3886595	+	311	158523251	-	Dole_3241	-	hypothetical protein
3235	 63.43	+1	3886846..3888144	+	432	158523252	-	Dole_3242	-	hypothetical protein
3236	 61.92	0	3888141..3889403	+	420	158523253	-	Dole_3243	-	Orn/DAP/Arg decarboxylase 2
3237	 55.40	0	3889933..3890145	+	70	158523254	-	Dole_3244	-	hypothetical protein
3238	 63.74	+1	3890168..3891259	+	363	158523255	-	Dole_3245	-	hypothetical protein
3239	 59.91	0	3891273..3891494	+	73	158523256	-	Dole_3246	-	SirA family protein
3240	 59.89	0	3891546..3892091	+	181	158523257	-	Dole_3247	-	hypothetical protein
3241	 62.57	+1	3892085..3892939	+	284	158523258	-	Dole_3248	-	hypothetical protein
3242	 59.10	0	3893485..3894435	+	316	158523259	-	Dole_3249	-	selenide, water dikinase
3243	 51.37	0	3895478..3896830	+	450	158523260	-	Dole_3250	-	transposase IS4 family protein
3244	 60.13	0	3897194..3898234	+	346	158523261	-	Dole_3251	-	hypothetical protein
3245	 56.75	0	3898252..3898755	+	167	158523262	-	Dole_3252	-	hypothetical protein
3246	 60.83	0	3898834..3899964	+	376	158523263	-	Dole_3253	-	hypothetical protein
3247	 61.51	0	3899980..3906336	+	2118	158523264	-	Dole_3254	-	hypothetical protein
3248	 59.33	0	3906336..3908174	+	612	158523265	-	Dole_3255	-	hypothetical protein
3249	 56.95	0	3908207..3910615	-	802	158523266	-	Dole_3256	-	PAS/PAC sensor hybrid histidine kinase
3250	 55.25	0	3910679..3911755	-	358	158523267	-	Dole_3257	-	response regulator receiver modulated metal dependent phosphohydrolase
3251	 56.47	0	3911783..3912625	-	280	158523268	-	Dole_3258	-	PAS/PAC sensor signal transduction histidine kinase
3252	 54.46	0	3912843..3914939	-	698	158523269	-	Dole_3259	-	hypothetical protein
3253	 52.64	0	3915364..3915855	-	163	158523270	-	Dole_3260	-	hypothetical protein
3254	 60.68	0	3915939..3917225	-	428	158523271	-	Dole_3261	-	hypothetical protein
3255	 61.76	0	3917723..3919150	-	475	158523272	-	Dole_3262	-	two component, sigma54 specific, Fis family transcriptional regulator
3256	 58.59	0	3919134..3921053	-	639	158523273	-	Dole_3263	-	PAS/PAC sensor hybrid histidine kinase
3257	 60.06	0	3921262..3924666	+	1134	158523274	-	Dole_3264	-	PAS/PAC sensor hybrid histidine kinase
3258	 59.20	0	3924682..3928002	+	1106	158523275	-	Dole_3265	-	PAS/PAC sensor hybrid histidine kinase
3259	 58.56	0	3928184..3930676	+	830	158523276	-	Dole_3266	-	putative PAS/PAC sensor protein
3260	 57.63	0	3930742..3934284	+	1180	158523277	-	Dole_3267	-	PAS/PAC sensor hybrid histidine kinase
3261	 56.23	0	3934266..3937505	+	1079	158523278	-	Dole_3268	-	PAS/PAC sensor hybrid histidine kinase
3262	 49.79	-1	3937669..3937905	+	78	158523279	-	Dole_3269	-	hypothetical protein
3263	 58.42	0	3937925..3939622	+	565	158523280	-	Dole_3270	-	histidine kinase
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.