IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2949	 52.52	0	3549531..3550562	-	343	158522966	-	Dole_2956	-	AraC family transcriptional regulator
2950	 52.49	0	3550652..3551878	+	408	158522967	-	Dole_2957	-	uroporphyrinogen-III decarboxylase-like protein
2951	 54.84	0	3551923..3552573	+	216	158522968	-	Dole_2958	-	cobalamin B12-binding domain-containing protein
2952	 57.53	0	3552590..3553585	-	331	158522969	-	Dole_2959	-	hypothetical protein
2953	 56.59	0	3553599..3554888	-	429	158522970	-	Dole_2960	-	hypothetical protein
2954	 54.40	0	3555005..3556333	-	442	158522971	-	Dole_2961	-	PhoH family protein
2955	 61.62	0	3556405..3557157	-	250	158522972	-	Dole_2962	-	vitamin B12 dependent methionine synthase activation region
2956	 58.29	0	3557580..3558689	-	369	158522973	-	Dole_2963	-	hypothetical protein
2957	 59.08	0	3558686..3559357	-	223	158522974	-	Dole_2964	-	cobalamin B12-binding domain-containing protein
2958	 55.85	0	3559414..3560088	-	224	158522975	-	Dole_2965	-	TetR family transcriptional regulator
2959	 59.22	0	3560426..3561016	-	196	158522976	-	Dole_2966	-	hypothetical protein
2960	 58.86	0	3561158..3561490	-	110	158522977	-	Dole_2967	-	hypothetical protein
2961	 51.55	0	3561487..3561744	-	85	158522978	-	Dole_2968	-	glutaredoxin
2962	 57.94	0	3561845..3562474	-	209	158522979	-	Dole_2969	-	nitroreductase
2963	 52.78	0	3562749..3563072	-	107	158522980	-	Dole_2970	-	hypothetical protein
2964	 59.56	0	3563253..3563927	-	224	158522981	-	Dole_2971	-	hypothetical protein
2965	 62.13	0	3564153..3565496	+	447	158522982	-	Dole_2972	-	peptidase M48 Ste24p
2966	 54.74	0	3565658..3566755	-	365	158522983	-	Dole_2973	-	ATPase
2967	 58.57	0	3567111..3567740	-	209	158522984	-	Dole_2974	-	TetR family transcriptional regulator
2968	 60.56	0	3567740..3569311	-	523	158522985	-	Dole_2975	-	carbohydrate kinase FGGY
2969	 59.38	0	3569566..3570813	-	415	158522986	-	Dole_2976	-	saccharopine dehydrogenase
2970	 57.13	0	3571105..3572499	+	464	158522987	-	Dole_2977	-	hypothetical protein
2971	 58.44	0	3572785..3573756	-	323	158522988	-	Dole_2978	-	hypothetical protein
2972	 60.95	0	3574303..3574704	+	133	158522989	-	Dole_2979	-	CrcB protein
2973	 62.89	+1	3574906..3576177	+	423	158522990	-	Dole_2980	-	signal transduction protein
2974	 58.76	0	3576677..3577840	+	387	158522991	-	Dole_2981	-	helix-turn-helix domain-containing protein
2975	 60.48	0	3577947..3580385	+	812	158522992	-	Dole_2982	-	heat shock protein 70
2976	 47.93	-1	3581073..3583772	+	899	158522993	-	Dole_2983	-	CRISPR-associated helicase Cas3
2977	 48.18	-1	3583769..3585358	+	529	158522994	-	Dole_2984	-	CRISPR-associated Cse1 family protein
2978	 51.47	0	3585355..3585933	+	192	158522995	-	Dole_2985	-	CRISPR-associated Cse2 family protein
2979	 48.25	-1	3585948..3587060	+	370	158522996	-	Dole_2986	-	CRISPR-associated Cse4 family protein
2980	 55.13	0	3587070..3587849	+	259	158522997	-	Dole_2987	-	CRISPR-associated Cas5 family protein
2981	 48.66	-1	3587900..3588721	+	273	158522998	-	Dole_2988	-	CRISPR-associated Cse3 family protein
2982	 54.95	0	3588767..3589696	+	309	158522999	-	Dole_2989	-	CRISPR-associated Cas1 family protein
2983	 52.52	0	3589698..3590015	+	105	158523000	-	Dole_2990	-	CRISPR-associated Cas2 family protein
2984	 54.02	0	3592702..3592875	-	57	158523001	-	Dole_2991	-	hypothetical protein
2985	 59.54	0	3593880..3595043	-	387	158523002	-	Dole_2992	-	diguanylate phosphodiesterase
2986	 50.54	-1	3595172..3595450	-	92	158523003	-	Dole_2993	-	putative transcriptional regulator
2987	 54.10	0	3595760..3596125	-	121	158523004	-	Dole_2994	-	hypothetical protein
2988	 60.35	0	3596115..3597095	-	326	158523005	-	Dole_2995	-	patatin
2989	 58.54	0	3597233..3597712	+	159	158523006	-	Dole_2996	-	AsnC family transcriptional regulator
2990	 42.01	-2	3597823..3598110	+	95	158523007	-	Dole_2997	-	excinuclease ABC subunit C
2991	 59.27	0	3598304..3599791	+	495	158523008	-	Dole_2998	-	hypothetical protein
2992	 61.80	0	3599788..3601143	+	451	158523009	-	Dole_2999	-	radical SAM domain-containing protein
2993	 55.88	0	3601629..3602036	+	135	158523010	-	Dole_3000	-	hypothetical protein
2994	 61.35	0	3602056..3603354	+	432	158523011	-	Dole_3001	-	major facilitator transporter
2995	 56.34	0	3603430..3604155	+	241	158523012	-	Dole_3002	-	hypothetical protein
2996	 61.54	0	3604200..3604706	+	168	158523013	-	Dole_3003	-	CMP/dCMP deaminase zinc-binding
2997	 57.25	0	3604906..3605553	-	215	158523014	-	Dole_3004	-	cytochrome B561
2998	 58.39	0	3605556..3607259	-	567	158523015	-	Dole_3005	-	cytochrome c family protein
2999	 58.33	0	3607505..3609328	-	607	158523016	-	Dole_3006	-	AMP-dependent synthetase and ligase
3000	 58.30	0	3609328..3610104	-	258	158523017	-	Dole_3007	-	ABC transporter-related protein
3001	 57.49	0	3610111..3610938	-	275	158523018	-	Dole_3008	-	ABC transporter-related protein
3002	 59.46	0	3611015..3612262	-	415	158523019	-	Dole_3009	-	extracellular ligand-binding receptor
3003	 58.33	0	3612316..3613191	-	291	158523020	-	Dole_3010	-	inner-membrane translocator
3004	 56.51	0	3613219..3614331	-	370	158523021	-	Dole_3011	-	inner-membrane translocator
3005	 57.46	0	3614449..3615513	-	354	158523022	-	Dole_3012	-	magnesium and cobalt transport protein CorA
3006	 61.77	0	3615549..3618080	-	843	158523023	-	Dole_3013	-	MscS mechanosensitive ion channel
3007	 57.01	0	3618117..3618644	-	175	158523024	-	Dole_3014	-	protein of unknown function DUF395 YeeE/YedE
3008	 59.20	0	3618770..3619171	-	133	158523025	-	Dole_3015	-	protein of unknown function DUF395, YeeE/YedE
3009	 60.58	0	3619337..3620617	-	426	158523026	-	Dole_3016	-	MscS mechanosensitive ion channel
3010	 58.14	0	3620794..3621579	-	261	158523027	-	Dole_3017	-	split soret cytochrome c precursor
3011	 61.34	0	3621717..3622898	-	393	158523028	-	Dole_3018	-	putative oxygen-independent coproporphyrinogen III oxidase
3012	 62.64	+1	3622879..3623424	-	181	158523029	-	Dole_3019	-	2-oxoglutarate synthase
3013	 58.15	0	3623421..3624230	-	269	158523030	-	Dole_3020	-	thiamine pyrophosphate binding domain-containing protein
3014	 63.71	+1	3624234..3625382	-	382	158523031	-	Dole_3021	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
3015	 52.70	0	3625375..3625596	-	73	158523032	-	Dole_3022	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
3016	 59.95	0	3625597..3626757	-	386	158523033	-	Dole_3023	-	radical SAM domain-containing protein
3017	 59.73	0	3627018..3630710	+	1230	158523034	-	Dole_3024	-	TPR repeat-containing protein
3018	 58.65	0	3630727..3631200	+	157	158523035	-	Dole_3025	-	hypothetical protein
3019	 56.54	0	3631248..3633173	-	641	158523036	-	Dole_3026	-	hypothetical protein
3020	 60.35	0	3633315..3634121	-	268	158523037	-	Dole_3027	-	beta-lactamase domain-containing protein
3021	 65.61	+1	3634178..3634651	-	157	158523038	-	Dole_3028	-	deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
3022	 60.20	0	3634667..3636832	-	721	158523039	-	Dole_3029	-	polynucleotide phosphorylase/polyadenylase
3023	 50.74	0	3636947..3637216	-	89	158523040	-	Dole_3030	-	ribosomal protein S15
3024	 64.14	+1	3637331..3638242	-	303	158523041	-	Dole_3031	-	tRNA pseudouridine synthase B
3025	 58.79	0	3638239..3639216	-	325	158523042	-	Dole_3032	-	phosphoesterase domain-containing protein
3026	 56.15	0	3639179..3639568	-	129	158523043	-	Dole_3033	-	ribosome-binding factor A
3027	 58.41	0	3639565..3639879	-	104	158523044	-	Dole_3034	-	hypothetical protein
3028	 60.08	0	3639892..3642546	-	884	158523045	-	Dole_3035	-	translation initiation factor IF-2
3029	 57.91	0	3642574..3644001	-	475	158523046	-	Dole_3036	-	transcription elongation factor NusA
3030	 59.52	0	3643998..3644543	-	181	158523047	-	Dole_3037	-	hypothetical protein
3031	 57.94	0	3644827..3645204	-	125	158523048	-	Dole_3038	-	MerR family transcriptional regulator
3032	 62.31	0	3645244..3647655	-	803	158523049	-	Dole_3039	-	phenylalanyl-tRNA synthetase, beta subunit
3033	 60.10	0	3647656..3648660	-	334	158523050	-	Dole_3040	-	phenylalanyl-tRNA synthetase, alpha subunit
3034	 57.26	0	3648793..3649143	-	116	158523051	-	Dole_3041	-	ribosomal protein L20
3035	 49.49	-1	3649195..3649392	-	65	158523052	-	Dole_3042	-	ribosomal protein L35
3036	 55.71	0	3649469..3649888	-	139	158523053	-	Dole_3043	-	initiation factor 3
3037	 61.51	0	3650358..3652298	+	646	158523054	-	Dole_3044	-	ATP-dependent metalloprotease FtsH
3038	 63.93	+1	3652304..3653179	+	291	158523055	-	Dole_3045	-	dihydropteroate synthase
3039	 62.63	+1	3653191..3653958	+	255	158523056	-	Dole_3046	-	Baf family transcriptional activator
3040	 38.23	-2	3654236..3655114	-	292	158523057	-	Dole_3047	-	hypothetical protein
3041	 53.96	0	3656105..3656584	-	159	158523058	-	Dole_3048	-	hypothetical protein
3042	 61.79	0	3657325..3657837	+	170	158523059	-	Dole_3049	-	nitroreductase
3043	 56.36	0	3658097..3658261	-	54	158523060	-	Dole_3050	-	hypothetical protein
3044	 52.30	0	3658258..3658932	-	224	158523061	-	Dole_3051	-	response regulator receiver protein
3045	 59.02	0	3658944..3660107	-	387	158523062	-	Dole_3052	-	twitching motility protein
3046	 60.02	0	3660128..3661210	-	360	158523063	-	Dole_3053	-	twitching motility protein
3047	 51.00	0	3661284..3661583	-	99	158523064	-	Dole_3054	-	protein of unknown function YGGT
3048	 52.80	0	3661738..3662076	-	112	158523065	-	Dole_3055	-	hypothetical protein
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.