IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2895	 58.86	0	3488449..3488922	+	157	158522912	-	Dole_2902	-	CMP/dCMP deaminase zinc-binding
2896	 58.38	0	3489235..3490743	+	502	158522913	-	Dole_2903	-	acyl-CoA dehydrogenase domain-containing protein
2897	 60.72	0	3490762..3491904	+	380	158522914	-	Dole_2904	-	acyl-CoA dehydrogenase type 2
2898	 59.91	0	3492082..3492969	+	295	158522915	-	Dole_2905	-	hypothetical protein
2899	 48.14	-1	3493451..3494524	-	357	158522916	-	Dole_2906	-	integrase family protein
2900	 37.37	-2	3495029..3495424	+	131	158522917	-	Dole_2907	-	hypothetical protein
2901	 42.00	-2	3495421..3496332	+	303	158522918	-	Dole_2908	-	hypothetical protein
2902	 48.64	-1	3496626..3497768	+	380	158522919	-	Dole_2909	-	hypothetical protein
2903	 43.80	-2	3498203..3498718	+	171	158522920	-	Dole_2910	-	hypothetical protein
2904	 38.92	-2	3499120..3501429	+	769	158522921	-	Dole_2911	-	P4 family phage/plasmid primase
2905	 30.82	-2	3501838..3502155	+	105	158522922	-	Dole_2912	-	hypothetical protein
2906	 52.27	0	3502213..3502476	-	87	158522923	-	Dole_2913	-	hypothetical protein
2907	 51.18	0	3502457..3502921	-	154	158522924	-	Dole_2914	-	hypothetical protein
2908	 52.94	0	3502933..3503136	-	67	158522925	-	Dole_2915	-	hypothetical protein
2909	 50.60	0	3503163..3503666	-	167	158522926	-	Dole_2916	-	DNA repair protein RadC
2910	 52.43	0	3503677..3504603	-	308	158522927	-	Dole_2917	-	hypothetical protein
2911	 52.30	0	3504732..3505295	-	187	158522928	-	Dole_2918	-	hypothetical protein
2912	 50.91	0	3505433..3507298	-	621	158522929	-	Dole_2919	-	UvrD/REP helicase
2913	 47.62	-1	3507295..3507588	-	97	158522930	-	Dole_2920	-	hypothetical protein
2914	 51.39	0	3507569..3508393	-	274	158522931	-	Dole_2921	-	hypothetical protein
2915	 53.62	0	3508490..3509455	-	321	158522932	-	Dole_2922	-	zinc finger SWIM domain-containing protein
2916	 52.34	0	3509568..3509930	-	120	158522933	-	Dole_2923	-	single-strand binding protein
2917	 46.74	-1	3510163..3510423	+	86	158522934	-	Dole_2924	-	hypothetical protein
2918	 46.30	-1	3510579..3512621	+	680	158522935	-	Dole_2925	-	N-6 DNA methylase
2919	 38.85	-2	3512623..3513927	+	434	158522936	-	Dole_2926	-	restriction modification system DNA specificity subunit
2920	 46.26	-1	3513931..3516993	+	1020	158522937	-	Dole_2927	-	HsdR family type I site-specific deoxyribonuclease
2921	 40.00	-2	3516990..3517649	+	219	158522938	-	Dole_2928	-	hypothetical protein
2922	 39.72	-2	3517786..3518991	-	401	158522939	-	Dole_2929	-	hypothetical protein
2923	 40.87	-2	3518996..3524890	-	1964	158522940	-	Dole_2930	-	hypothetical protein
2924	 36.52	-2	3524887..3525639	-	250	158522941	-	Dole_2931	-	hypothetical protein
2925	 48.30	-1	3525957..3526691	-	244	158522942	-	Dole_2932	-	nuclease
2926	 38.72	-2	3526849..3528018	-	389	158522943	-	Dole_2933	-	SecC motif-containing protein
2927	 47.11	-1	3528729..3529091	-	120	158522944	-	Dole_2934	-	hypothetical protein
2928	 49.38	-1	3529097..3529582	-	161	158522945	-	Dole_2935	-	hypothetical protein
2929	 46.54	-1	3529858..3532356	+	832	158522946	-	Dole_2936	-	hypothetical protein
2930	 50.74	0	3532380..3533195	+	271	158522947	-	Dole_2937	-	hypothetical protein
2931	 48.20	-1	3533294..3533905	+	203	158522948	-	Dole_2938	-	hypothetical protein
2932	 46.56	-1	3533928..3534713	-	261	158522949	-	Dole_2939	-	hypothetical protein
2933	 46.77	-1	3534753..3534953	-	66	158522950	-	Dole_2940	-	hypothetical protein
2934	 46.88	-1	3535039..3535230	-	63	158522951	-	Dole_2941	-	hypothetical protein
2935	 47.25	-1	3535211..3535519	-	102	158522952	-	Dole_2942	-	hypothetical protein
2936	 49.85	-1	3535535..3535867	-	110	158522953	-	Dole_2943	-	hypothetical protein
2937	 46.89	-1	3536619..3537887	+	422	158522954	-	Dole_2944	-	hypothetical protein
2938	 45.10	-1	3538349..3538858	+	169	158522955	-	Dole_2945	-	hypothetical protein
2939	 57.02	0	3538855..3539694	+	279	158522956	-	Dole_2946	-	hypothetical protein
2940	 48.97	-1	3539975..3541375	+	466	158522957	-	Dole_2947	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
2941	 44.64	-1	3542127..3542825	-	232	158522958	-	Dole_2948	-	hypothetical protein
2942	 39.67	-2	3543456..3543944	+	162	158522959	-	Dole_2949	-	hypothetical protein
2943	 50.60	0	3544142..3544390	-	82	158522960	-	Dole_2950	-	hypothetical protein
2944	 50.17	-1	3544558..3544848	-	96	158522961	-	Dole_2951	-	hypothetical protein
2945	 44.84	-1	3545171..3545587	-	138	158522962	-	Dole_2952	-	hypothetical protein
2946	 50.36	-1	3545622..3545897	-	91	158522963	-	Dole_2953	-	hypothetical protein
2947	 48.37	-1	3546205..3547434	-	409	158522964	-	Dole_2954	-	integrase family protein
2948	 57.31	0	3548099..3549349	+	416	158522965	-	Dole_2955	-	AAA family ATPase
2949	 52.52	0	3549531..3550562	-	343	158522966	-	Dole_2956	-	AraC family transcriptional regulator
2950	 52.49	0	3550652..3551878	+	408	158522967	-	Dole_2957	-	uroporphyrinogen-III decarboxylase-like protein
2951	 54.84	0	3551923..3552573	+	216	158522968	-	Dole_2958	-	cobalamin B12-binding domain-containing protein
2952	 57.53	0	3552590..3553585	-	331	158522969	-	Dole_2959	-	hypothetical protein
2953	 56.59	0	3553599..3554888	-	429	158522970	-	Dole_2960	-	hypothetical protein
2954	 54.40	0	3555005..3556333	-	442	158522971	-	Dole_2961	-	PhoH family protein
2955	 61.62	0	3556405..3557157	-	250	158522972	-	Dole_2962	-	vitamin B12 dependent methionine synthase activation region
2956	 58.29	0	3557580..3558689	-	369	158522973	-	Dole_2963	-	hypothetical protein
2957	 59.08	0	3558686..3559357	-	223	158522974	-	Dole_2964	-	cobalamin B12-binding domain-containing protein
2958	 55.85	0	3559414..3560088	-	224	158522975	-	Dole_2965	-	TetR family transcriptional regulator
2959	 59.22	0	3560426..3561016	-	196	158522976	-	Dole_2966	-	hypothetical protein
2960	 58.86	0	3561158..3561490	-	110	158522977	-	Dole_2967	-	hypothetical protein
2961	 51.55	0	3561487..3561744	-	85	158522978	-	Dole_2968	-	glutaredoxin
2962	 57.94	0	3561845..3562474	-	209	158522979	-	Dole_2969	-	nitroreductase
2963	 52.78	0	3562749..3563072	-	107	158522980	-	Dole_2970	-	hypothetical protein
2964	 59.56	0	3563253..3563927	-	224	158522981	-	Dole_2971	-	hypothetical protein
2965	 62.13	0	3564153..3565496	+	447	158522982	-	Dole_2972	-	peptidase M48 Ste24p
2966	 54.74	0	3565658..3566755	-	365	158522983	-	Dole_2973	-	ATPase
2967	 58.57	0	3567111..3567740	-	209	158522984	-	Dole_2974	-	TetR family transcriptional regulator
2968	 60.56	0	3567740..3569311	-	523	158522985	-	Dole_2975	-	carbohydrate kinase FGGY
2969	 59.38	0	3569566..3570813	-	415	158522986	-	Dole_2976	-	saccharopine dehydrogenase
2970	 57.13	0	3571105..3572499	+	464	158522987	-	Dole_2977	-	hypothetical protein
2971	 58.44	0	3572785..3573756	-	323	158522988	-	Dole_2978	-	hypothetical protein
2972	 60.95	0	3574303..3574704	+	133	158522989	-	Dole_2979	-	CrcB protein
2973	 62.89	+1	3574906..3576177	+	423	158522990	-	Dole_2980	-	signal transduction protein
2974	 58.76	0	3576677..3577840	+	387	158522991	-	Dole_2981	-	helix-turn-helix domain-containing protein
2975	 60.48	0	3577947..3580385	+	812	158522992	-	Dole_2982	-	heat shock protein 70
2976	 47.93	-1	3581073..3583772	+	899	158522993	-	Dole_2983	-	CRISPR-associated helicase Cas3
2977	 48.18	-1	3583769..3585358	+	529	158522994	-	Dole_2984	-	CRISPR-associated Cse1 family protein
2978	 51.47	0	3585355..3585933	+	192	158522995	-	Dole_2985	-	CRISPR-associated Cse2 family protein
2979	 48.25	-1	3585948..3587060	+	370	158522996	-	Dole_2986	-	CRISPR-associated Cse4 family protein
2980	 55.13	0	3587070..3587849	+	259	158522997	-	Dole_2987	-	CRISPR-associated Cas5 family protein
2981	 48.66	-1	3587900..3588721	+	273	158522998	-	Dole_2988	-	CRISPR-associated Cse3 family protein
2982	 54.95	0	3588767..3589696	+	309	158522999	-	Dole_2989	-	CRISPR-associated Cas1 family protein
2983	 52.52	0	3589698..3590015	+	105	158523000	-	Dole_2990	-	CRISPR-associated Cas2 family protein
2984	 54.02	0	3592702..3592875	-	57	158523001	-	Dole_2991	-	hypothetical protein
2985	 59.54	0	3593880..3595043	-	387	158523002	-	Dole_2992	-	diguanylate phosphodiesterase
2986	 50.54	-1	3595172..3595450	-	92	158523003	-	Dole_2993	-	putative transcriptional regulator
2987	 54.10	0	3595760..3596125	-	121	158523004	-	Dole_2994	-	hypothetical protein
2988	 60.35	0	3596115..3597095	-	326	158523005	-	Dole_2995	-	patatin
2989	 58.54	0	3597233..3597712	+	159	158523006	-	Dole_2996	-	AsnC family transcriptional regulator
2990	 42.01	-2	3597823..3598110	+	95	158523007	-	Dole_2997	-	excinuclease ABC subunit C
2991	 59.27	0	3598304..3599791	+	495	158523008	-	Dole_2998	-	hypothetical protein
2992	 61.80	0	3599788..3601143	+	451	158523009	-	Dole_2999	-	radical SAM domain-containing protein
2993	 55.88	0	3601629..3602036	+	135	158523010	-	Dole_3000	-	hypothetical protein
2994	 61.35	0	3602056..3603354	+	432	158523011	-	Dole_3001	-	major facilitator transporter
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.