IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2828	 54.07	0	3416047..3416697	+	216	158522845	-	Dole_2835	-	hypothetical protein
2829	 58.76	0	3417413..3419170	-	585	158522846	-	Dole_2836	-	lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
2830	 59.15	0	3419170..3420339	-	389	158522847	-	Dole_2837	-	lipid-A-disaccharide synthase
2831	 57.37	0	3420332..3421288	-	318	158522848	-	Dole_2838	-	oxidoreductase domain-containing protein
2832	 61.92	0	3421307..3422128	-	273	158522849	-	Dole_2839	-	hypothetical protein
2833	 58.63	0	3422247..3423017	-	256	158522850	-	Dole_2840	-	acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase
2834	 61.37	0	3423034..3423486	-	150	158522851	-	Dole_2841	-	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ
2835	 60.80	0	3423509..3424531	-	340	158522852	-	Dole_2842	-	UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
2836	 51.58	0	3424565..3425101	-	178	158522853	-	Dole_2843	-	outer membrane chaperone Skp (OmpH)
2837	 56.05	0	3425190..3427931	-	913	158522854	-	Dole_2844	-	surface antigen (D15)
2838	 60.32	0	3427933..3428673	-	246	158522855	-	Dole_2845	-	ABC transporter-related protein
2839	 56.81	0	3428666..3429892	-	408	158522856	-	Dole_2846	-	LolC/E family lipoprotein releasing system, transmembrane protein
2840	 59.93	0	3429935..3431389	-	484	158522857	-	Dole_2847	-	lysyl-tRNA synthetase
2841	 54.77	0	3431522..3432967	-	481	158522858	-	Dole_2848	-	histidine kinase
2842	 54.54	0	3433011..3434222	-	403	158522859	-	Dole_2849	-	type II secretion system protein
2843	 58.61	0	3434703..3435869	-	388	158522860	-	Dole_2850	-	S-adenosylmethionine synthetase
2844	 59.94	0	3436284..3437621	+	445	158522861	-	Dole_2851	-	hypothetical protein
2845	 59.03	0	3437647..3439230	+	527	158522862	-	Dole_2852	-	D-3-phosphoglycerate dehydrogenase
2846	 60.67	0	3439491..3440291	+	266	158522863	-	Dole_2853	-	methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase
2847	 64.34	+1	3440333..3441319	+	328	158522864	-	Dole_2854	-	ribokinase-like domain-containing protein
2848	 60.24	0	3441341..3442009	+	222	158522865	-	Dole_2855	-	TPR repeat-containing protein
2849	 59.56	0	3442041..3443954	-	637	158522866	-	Dole_2856	-	phospholipid/glycerol acyltransferase
2850	 53.48	0	3444203..3444475	-	90	158522867	-	Dole_2857	-	histone family protein DNA-binding protein
2851	 64.39	+1	3444657..3445448	-	263	158522868	-	Dole_2858	-	metal dependent phosphohydrolase
2852	 60.52	0	3445438..3446430	-	330	158522869	-	Dole_2859	-	molybdenum cofactor biosynthesis protein A
2853	 56.85	0	3446440..3447417	-	325	158522870	-	Dole_2860	-	glycosyl transferase family protein
2854	 61.37	0	3447398..3448567	-	389	158522871	-	Dole_2861	-	hypothetical protein
2855	 63.20	+1	3448677..3449369	+	230	158522872	-	Dole_2862	-	phosphoglycerate mutase
2856	 60.46	0	3449425..3449859	+	144	158522873	-	Dole_2863	-	hypothetical protein
2857	 60.59	0	3449874..3450647	+	257	158522874	-	Dole_2864	-	enoyl-CoA hydratase/isomerase
2858	 56.74	0	3451427..3451849	-	140	158522875	-	Dole_2865	-	hypothetical protein
2859	 62.79	+1	3452103..3453083	-	326	158522876	-	Dole_2866	-	nifR3 family TIM-barrel protein
2860	 59.44	0	3453121..3453798	-	225	158522877	-	Dole_2867	-	hypothetical protein
2861	 56.67	0	3453953..3454402	+	149	158522878	-	Dole_2868	-	CoA-binding domain-containing protein
2862	 53.76	0	3454833..3455018	-	61	158522879	-	Dole_2869	-	hypothetical protein
2863	 54.33	0	3455072..3455452	-	126	158522880	-	Dole_2870	-	desulfoferrodoxin
2864	 60.76	0	3455605..3458568	-	987	158522881	-	Dole_2871	-	peptidase M16C associated domain-containing protein
2865	 56.69	0	3458625..3459005	-	126	158522882	-	Dole_2872	-	hypothetical protein
2866	 60.40	0	3459259..3460821	-	520	158522883	-	Dole_2873	-	radical SAM domain-containing protein
2867	 59.79	0	3461139..3461516	+	125	158522884	-	Dole_2874	-	glyoxalase/bleomycin resistance protein/dioxygenase
2868	 60.90	0	3461635..3463281	+	548	158522885	-	Dole_2875	-	hydroxylamine reductase
2869	 54.32	0	3463956..3464360	+	134	158522886	-	Dole_2876	-	ArsR family transcriptional regulator
2870	 61.55	0	3464659..3465831	+	390	158522887	-	Dole_2877	-	permease
2871	 54.27	0	3465867..3466100	+	77	158522888	-	Dole_2878	-	redox-active disulfide protein 2
2872	 58.33	0	3466143..3466346	+	67	158522889	-	Dole_2879	-	hypothetical protein
2873	 56.51	0	3466416..3466937	+	173	158522890	-	Dole_2880	-	Fe-S cluster domain-containing protein
2874	 57.53	0	3466956..3467393	+	145	158522891	-	Dole_2881	-	protein tyrosine phosphatase
2875	 59.61	0	3467409..3468599	+	396	158522892	-	Dole_2882	-	arsenical-resistance protein
2876	 60.89	0	3468663..3469181	+	172	158522893	-	Dole_2883	-	rhodanese domain-containing protein
2877	 65.48	+1	3469171..3470094	+	307	158522894	-	Dole_2884	-	cation diffusion facilitator family transporter
2878	 59.88	0	3470099..3470584	+	161	158522895	-	Dole_2885	-	DoxX family protein
2879	 55.72	0	3470581..3470982	+	133	158522896	-	Dole_2886	-	thioredoxin domain-containing protein
2880	 63.99	+1	3470979..3471689	+	236	158522897	-	Dole_2887	-	cytochrome c biogenesis protein transmembrane region
2881	 46.61	-1	3471784..3472122	-	112	158522898	-	Dole_2888	-	hypothetical protein
2882	 43.17	-2	3472273..3472587	-	104	158522899	-	Dole_2889	-	XRE family plasmid maintenance system antidote protein
2883	 35.84	-2	3472599..3472877	-	92	158522900	-	Dole_2890	-	plasmid maintenance system killer
2884	 63.33	+1	3473501..3474400	-	299	158522901	-	Dole_2891	-	hypothetical protein
2885	 58.04	0	3474572..3475255	+	227	158522902	-	Dole_2892	-	TetR family transcriptional regulator
2886	 59.58	0	3475243..3476061	+	272	158522903	-	Dole_2893	-	hypothetical protein
2887	 62.73	+1	3476132..3477325	+	397	158522904	-	Dole_2894	-	RND family efflux transporter MFP subunit
2888	 61.57	0	3477338..3480517	+	1059	158522905	-	Dole_2895	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
2889	 66.11	+1	3480519..3481952	+	477	158522906	-	Dole_2896	-	RND efflux system outer membrane lipoprotein
2890	 54.53	0	3481973..3482878	+	301	158522907	-	Dole_2897	-	outer membrane phospholipase A
2891	 52.68	0	3483494..3484780	+	428	158522908	-	Dole_2898	-	peptidase C14 caspase catalytic subunit p20
2892	 50.71	0	3484851..3486179	+	442	158522909	-	Dole_2899	-	ankyrin
2893	 58.78	0	3486185..3487579	+	464	158522910	-	Dole_2900	-	peptidase C14 caspase catalytic subunit p20
2894	 58.55	0	3487607..3488431	+	274	158522911	-	Dole_2901	-	hypothetical protein
2895	 58.86	0	3488449..3488922	+	157	158522912	-	Dole_2902	-	CMP/dCMP deaminase zinc-binding
2896	 58.38	0	3489235..3490743	+	502	158522913	-	Dole_2903	-	acyl-CoA dehydrogenase domain-containing protein
2897	 60.72	0	3490762..3491904	+	380	158522914	-	Dole_2904	-	acyl-CoA dehydrogenase type 2
2898	 59.91	0	3492082..3492969	+	295	158522915	-	Dole_2905	-	hypothetical protein
2899	 48.14	-1	3493451..3494524	-	357	158522916	-	Dole_2906	-	integrase family protein
2900	 37.37	-2	3495029..3495424	+	131	158522917	-	Dole_2907	-	hypothetical protein
2901	 42.00	-2	3495421..3496332	+	303	158522918	-	Dole_2908	-	hypothetical protein
2902	 48.64	-1	3496626..3497768	+	380	158522919	-	Dole_2909	-	hypothetical protein
2903	 43.80	-2	3498203..3498718	+	171	158522920	-	Dole_2910	-	hypothetical protein
2904	 38.92	-2	3499120..3501429	+	769	158522921	-	Dole_2911	-	P4 family phage/plasmid primase
2905	 30.82	-2	3501838..3502155	+	105	158522922	-	Dole_2912	-	hypothetical protein
2906	 52.27	0	3502213..3502476	-	87	158522923	-	Dole_2913	-	hypothetical protein
2907	 51.18	0	3502457..3502921	-	154	158522924	-	Dole_2914	-	hypothetical protein
2908	 52.94	0	3502933..3503136	-	67	158522925	-	Dole_2915	-	hypothetical protein
2909	 50.60	0	3503163..3503666	-	167	158522926	-	Dole_2916	-	DNA repair protein RadC
2910	 52.43	0	3503677..3504603	-	308	158522927	-	Dole_2917	-	hypothetical protein
2911	 52.30	0	3504732..3505295	-	187	158522928	-	Dole_2918	-	hypothetical protein
2912	 50.91	0	3505433..3507298	-	621	158522929	-	Dole_2919	-	UvrD/REP helicase
2913	 47.62	-1	3507295..3507588	-	97	158522930	-	Dole_2920	-	hypothetical protein
2914	 51.39	0	3507569..3508393	-	274	158522931	-	Dole_2921	-	hypothetical protein
2915	 53.62	0	3508490..3509455	-	321	158522932	-	Dole_2922	-	zinc finger SWIM domain-containing protein
2916	 52.34	0	3509568..3509930	-	120	158522933	-	Dole_2923	-	single-strand binding protein
2917	 46.74	-1	3510163..3510423	+	86	158522934	-	Dole_2924	-	hypothetical protein
2918	 46.30	-1	3510579..3512621	+	680	158522935	-	Dole_2925	-	N-6 DNA methylase
2919	 38.85	-2	3512623..3513927	+	434	158522936	-	Dole_2926	-	restriction modification system DNA specificity subunit
2920	 46.26	-1	3513931..3516993	+	1020	158522937	-	Dole_2927	-	HsdR family type I site-specific deoxyribonuclease
2921	 40.00	-2	3516990..3517649	+	219	158522938	-	Dole_2928	-	hypothetical protein
2922	 39.72	-2	3517786..3518991	-	401	158522939	-	Dole_2929	-	hypothetical protein
2923	 40.87	-2	3518996..3524890	-	1964	158522940	-	Dole_2930	-	hypothetical protein
2924	 36.52	-2	3524887..3525639	-	250	158522941	-	Dole_2931	-	hypothetical protein
2925	 48.30	-1	3525957..3526691	-	244	158522942	-	Dole_2932	-	nuclease
2926	 38.72	-2	3526849..3528018	-	389	158522943	-	Dole_2933	-	SecC motif-containing protein
2927	 47.11	-1	3528729..3529091	-	120	158522944	-	Dole_2934	-	hypothetical protein
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.