IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2782	 61.88	0	3364299..3365678	-	459	158522799	-	Dole_2789	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
2783	 58.06	0	3365678..3366757	-	359	158522800	-	Dole_2790	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2784	 62.44	+1	3366760..3368178	-	472	158522801	-	Dole_2791	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
2785	 63.96	+1	3368209..3369798	-	529	158522802	-	Dole_2792	-	UDP-N-acetylmuramyl-tripeptide synthetase
2786	 60.82	0	3369795..3371555	-	586	158522803	-	Dole_2793	-	peptidoglycan glycosyltransferase
2787	 59.93	0	3371552..3371848	-	98	158522804	-	Dole_2794	-	hypothetical protein
2788	 60.81	0	3371865..3372803	-	312	158522805	-	Dole_2795	-	S-adenosyl-methyltransferase MraW
2789	 51.93	0	3372805..3373245	-	146	158522806	-	Dole_2796	-	MraZ protein
2790	 63.15	+1	3373488..3374483	+	331	158522807	-	Dole_2797	-	putative tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
2791	 61.48	0	3374604..3377150	+	848	158522808	-	Dole_2798	-	penicillin amidase
2792	 61.75	0	3377449..3378303	+	284	158522809	-	Dole_2799	-	alpha/beta hydrolase fold
2793	 60.50	0	3378320..3379390	-	356	158522810	-	Dole_2800	-	GTPase EngC
2794	 58.54	0	3379784..3381949	-	721	158522811	-	Dole_2801	-	copper-translocating P-type ATPase
2795	 56.45	0	3382148..3382783	-	211	158522812	-	Dole_2802	-	hypothetical protein
2796	 60.33	0	3382767..3383318	-	183	158522813	-	Dole_2803	-	protein of unknown function DUF395 YeeE/YedE
2797	 56.35	0	3383315..3383857	-	180	158522814	-	Dole_2804	-	hypothetical protein
2798	 55.83	0	3383860..3384948	-	362	158522815	-	Dole_2805	-	rhodanese domain-containing protein
2799	 53.16	0	3384964..3385437	-	157	158522816	-	Dole_2806	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
2800	 61.74	0	3386458..3387858	-	466	158522817	-	Dole_2807	-	two component, sigma54 specific, Fis family transcriptional regulator
2801	 62.02	0	3387855..3389642	-	595	158522818	-	Dole_2808	-	PAS/PAC sensor signal transduction histidine kinase
2802	 55.28	0	3390075..3390557	+	160	158522819	-	Dole_2809	-	hypothetical protein
2803	 54.95	0	3391049..3391432	+	127	158522820	-	Dole_2810	-	response regulator receiver protein
2804	 62.39	0	3391485..3392981	-	498	158522821	-	Dole_2811	-	multi-sensor signal transduction histidine kinase
2805	 59.27	0	3392971..3394458	-	495	158522822	-	Dole_2812	-	PAS/PAC sensor signal transduction histidine kinase
2806	 60.79	0	3394644..3396242	+	532	158522823	-	Dole_2813	-	D-3-phosphoglycerate dehydrogenase
2807	 50.15	-1	3396365..3396691	+	108	158522824	-	Dole_2814	-	hypothetical protein
2808	 59.40	0	3396688..3398145	+	485	158522825	-	Dole_2815	-	protease Do
2809	 58.39	0	3398264..3399121	+	285	158522826	-	Dole_2816	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
2810	 58.81	0	3399258..3400211	+	317	158522827	-	Dole_2817	-	ribose-phosphate pyrophosphokinase
2811	 57.49	0	3400263..3400916	+	217	158522828	-	Dole_2818	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
2812	 54.81	0	3400956..3401537	+	193	158522829	-	Dole_2819	-	aminoacyl-tRNA hydrolase
2813	 59.86	0	3401596..3403668	+	690	158522830	-	Dole_2820	-	membrane-bound proton-translocating pyrophosphatase
2814	 52.91	0	3403803..3404369	+	188	158522831	-	Dole_2821	-	CarD family transcriptional regulator
2815	 60.91	0	3404356..3405345	+	329	158522832	-	Dole_2822	-	RluA family pseudouridine synthase
2816	 58.48	0	3405389..3406267	+	292	158522833	-	Dole_2823	-	short chain dehydrogenase
2817	 60.82	0	3406264..3407340	+	358	158522834	-	Dole_2824	-	hypothetical protein
2818	 62.24	0	3407431..3409530	-	699	158522835	-	Dole_2825	-	electron transport complex, RnfABCDGE type, B subunit
2819	 57.47	0	3409567..3410142	-	191	158522836	-	Dole_2826	-	electron transport complex, RnfABCDGE type, A subunit
2820	 57.05	0	3410152..3410754	-	200	158522837	-	Dole_2827	-	SoxR-reducing system protein RsxE
2821	 60.41	0	3410770..3411360	-	196	158522838	-	Dole_2828	-	electron transport complex, RnfABCDGE type, G subunit
2822	 57.11	0	3411360..3412322	-	320	158522839	-	Dole_2829	-	electron transport complex, RnfABCDGE type, D subunit
2823	 60.75	0	3412312..3413595	-	427	158522840	-	Dole_2830	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2824	 58.38	0	3413659..3414213	-	184	158522841	-	Dole_2831	-	hypothetical protein
2825	 61.35	0	3414425..3415120	-	231	158522842	-	Dole_2832	-	transcriptional regulatory protein
2826	 57.61	0	3415265..3415540	-	91	158522843	-	Dole_2833	-	hypothetical protein
2827	 63.16	+1	3415809..3415979	+	56	158522844	-	Dole_2834	-	hypothetical protein
2828	 54.07	0	3416047..3416697	+	216	158522845	-	Dole_2835	-	hypothetical protein
2829	 58.76	0	3417413..3419170	-	585	158522846	-	Dole_2836	-	lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
2830	 59.15	0	3419170..3420339	-	389	158522847	-	Dole_2837	-	lipid-A-disaccharide synthase
2831	 57.37	0	3420332..3421288	-	318	158522848	-	Dole_2838	-	oxidoreductase domain-containing protein
2832	 61.92	0	3421307..3422128	-	273	158522849	-	Dole_2839	-	hypothetical protein
2833	 58.63	0	3422247..3423017	-	256	158522850	-	Dole_2840	-	acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase
2834	 61.37	0	3423034..3423486	-	150	158522851	-	Dole_2841	-	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ
2835	 60.80	0	3423509..3424531	-	340	158522852	-	Dole_2842	-	UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
2836	 51.58	0	3424565..3425101	-	178	158522853	-	Dole_2843	-	outer membrane chaperone Skp (OmpH)
2837	 56.05	0	3425190..3427931	-	913	158522854	-	Dole_2844	-	surface antigen (D15)
2838	 60.32	0	3427933..3428673	-	246	158522855	-	Dole_2845	-	ABC transporter-related protein
2839	 56.81	0	3428666..3429892	-	408	158522856	-	Dole_2846	-	LolC/E family lipoprotein releasing system, transmembrane protein
2840	 59.93	0	3429935..3431389	-	484	158522857	-	Dole_2847	-	lysyl-tRNA synthetase
2841	 54.77	0	3431522..3432967	-	481	158522858	-	Dole_2848	-	histidine kinase
2842	 54.54	0	3433011..3434222	-	403	158522859	-	Dole_2849	-	type II secretion system protein
2843	 58.61	0	3434703..3435869	-	388	158522860	-	Dole_2850	-	S-adenosylmethionine synthetase
2844	 59.94	0	3436284..3437621	+	445	158522861	-	Dole_2851	-	hypothetical protein
2845	 59.03	0	3437647..3439230	+	527	158522862	-	Dole_2852	-	D-3-phosphoglycerate dehydrogenase
2846	 60.67	0	3439491..3440291	+	266	158522863	-	Dole_2853	-	methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase
2847	 64.34	+1	3440333..3441319	+	328	158522864	-	Dole_2854	-	ribokinase-like domain-containing protein
2848	 60.24	0	3441341..3442009	+	222	158522865	-	Dole_2855	-	TPR repeat-containing protein
2849	 59.56	0	3442041..3443954	-	637	158522866	-	Dole_2856	-	phospholipid/glycerol acyltransferase
2850	 53.48	0	3444203..3444475	-	90	158522867	-	Dole_2857	-	histone family protein DNA-binding protein
2851	 64.39	+1	3444657..3445448	-	263	158522868	-	Dole_2858	-	metal dependent phosphohydrolase
2852	 60.52	0	3445438..3446430	-	330	158522869	-	Dole_2859	-	molybdenum cofactor biosynthesis protein A
2853	 56.85	0	3446440..3447417	-	325	158522870	-	Dole_2860	-	glycosyl transferase family protein
2854	 61.37	0	3447398..3448567	-	389	158522871	-	Dole_2861	-	hypothetical protein
2855	 63.20	+1	3448677..3449369	+	230	158522872	-	Dole_2862	-	phosphoglycerate mutase
2856	 60.46	0	3449425..3449859	+	144	158522873	-	Dole_2863	-	hypothetical protein
2857	 60.59	0	3449874..3450647	+	257	158522874	-	Dole_2864	-	enoyl-CoA hydratase/isomerase
2858	 56.74	0	3451427..3451849	-	140	158522875	-	Dole_2865	-	hypothetical protein
2859	 62.79	+1	3452103..3453083	-	326	158522876	-	Dole_2866	-	nifR3 family TIM-barrel protein
2860	 59.44	0	3453121..3453798	-	225	158522877	-	Dole_2867	-	hypothetical protein
2861	 56.67	0	3453953..3454402	+	149	158522878	-	Dole_2868	-	CoA-binding domain-containing protein
2862	 53.76	0	3454833..3455018	-	61	158522879	-	Dole_2869	-	hypothetical protein
2863	 54.33	0	3455072..3455452	-	126	158522880	-	Dole_2870	-	desulfoferrodoxin
2864	 60.76	0	3455605..3458568	-	987	158522881	-	Dole_2871	-	peptidase M16C associated domain-containing protein
2865	 56.69	0	3458625..3459005	-	126	158522882	-	Dole_2872	-	hypothetical protein
2866	 60.40	0	3459259..3460821	-	520	158522883	-	Dole_2873	-	radical SAM domain-containing protein
2867	 59.79	0	3461139..3461516	+	125	158522884	-	Dole_2874	-	glyoxalase/bleomycin resistance protein/dioxygenase
2868	 60.90	0	3461635..3463281	+	548	158522885	-	Dole_2875	-	hydroxylamine reductase
2869	 54.32	0	3463956..3464360	+	134	158522886	-	Dole_2876	-	ArsR family transcriptional regulator
2870	 61.55	0	3464659..3465831	+	390	158522887	-	Dole_2877	-	permease
2871	 54.27	0	3465867..3466100	+	77	158522888	-	Dole_2878	-	redox-active disulfide protein 2
2872	 58.33	0	3466143..3466346	+	67	158522889	-	Dole_2879	-	hypothetical protein
2873	 56.51	0	3466416..3466937	+	173	158522890	-	Dole_2880	-	Fe-S cluster domain-containing protein
2874	 57.53	0	3466956..3467393	+	145	158522891	-	Dole_2881	-	protein tyrosine phosphatase
2875	 59.61	0	3467409..3468599	+	396	158522892	-	Dole_2882	-	arsenical-resistance protein
2876	 60.89	0	3468663..3469181	+	172	158522893	-	Dole_2883	-	rhodanese domain-containing protein
2877	 65.48	+1	3469171..3470094	+	307	158522894	-	Dole_2884	-	cation diffusion facilitator family transporter
2878	 59.88	0	3470099..3470584	+	161	158522895	-	Dole_2885	-	DoxX family protein
2879	 55.72	0	3470581..3470982	+	133	158522896	-	Dole_2886	-	thioredoxin domain-containing protein
2880	 63.99	+1	3470979..3471689	+	236	158522897	-	Dole_2887	-	cytochrome c biogenesis protein transmembrane region
2881	 46.61	-1	3471784..3472122	-	112	158522898	-	Dole_2888	-	hypothetical protein
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.