IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2742	 59.78	0	3317281..3318297	-	338	158522759	-	Dole_2749	-	D-alanine--D-alanine ligase
2743	 43.03	-2	3318514..3318843	-	109	158522760	-	Dole_2750	-	HicB family protein
2744	 40.23	-2	3318827..3319087	-	86	158522761	-	Dole_2751	-	hypothetical protein
2745	 45.79	-1	3319575..3319871	-	98	158522762	-	Dole_2752	-	hypothetical protein
2746	 46.52	-1	3319868..3320140	-	90	158522763	-	Dole_2753	-	hypothetical protein
2747	 60.75	0	3320556..3321383	-	275	158522764	-	Dole_2754	-	short-chain dehydrogenase/reductase SDR
2748	 60.72	0	3321610..3324300	+	896	158522765	-	Dole_2755	-	CBS domain-containing protein
2749	 61.09	0	3324679..3325377	+	232	158522766	-	Dole_2756	-	peptidase M50
2750	 61.62	0	3325403..3326392	+	329	158522767	-	Dole_2757	-	tryptophanyl-tRNA synthetase
2751	 55.69	0	3326389..3327135	+	248	158522768	-	Dole_2758	-	chromosome segregation and condensation protein ScpA
2752	 61.22	0	3327132..3328031	+	299	158522769	-	Dole_2759	-	segregation and condensation protein B
2753	 53.33	0	3328268..3328792	+	174	158522770	-	Dole_2760	-	cyclic nucleotide-binding protein
2754	 60.74	0	3328822..3329868	+	348	158522771	-	Dole_2761	-	radical SAM domain-containing protein
2755	 59.72	0	3330001..3331224	-	407	158522772	-	Dole_2762	-	hypothetical protein
2756	 58.83	0	3331280..3332134	-	284	158522773	-	Dole_2763	-	substrate-binding region of ABC-type glycine betaine transport system
2757	 59.38	0	3332247..3333083	-	278	158522774	-	Dole_2764	-	binding-protein-dependent transport systems inner membrane component
2758	 59.92	0	3333076..3334275	-	399	158522775	-	Dole_2765	-	glycine betaine/L-proline ABC transporter, ATPase subunit
2759	 56.52	0	3334858..3338178	-	1106	158522776	-	Dole_2766	-	hypothetical protein
2760	 58.65	0	3338733..3339518	+	261	158522777	-	Dole_2767	-	GntR family transcriptional regulator
2761	 61.89	0	3339515..3340978	+	487	158522778	-	Dole_2768	-	hypothetical protein
2762	 58.77	0	3340980..3342119	+	379	158522779	-	Dole_2769	-	2-hydroxyglutaryl-CoA dehydratase D-component
2763	 57.39	0	3342147..3343547	+	466	158522780	-	Dole_2770	-	2-hydroxyglutaryl-CoA dehydratase D-component
2764	 60.32	0	3343544..3344347	+	267	158522781	-	Dole_2771	-	putative CoA-substrate-specific enzyme activase
2765	 60.54	0	3344344..3345126	+	260	158522782	-	Dole_2772	-	putative CoA-substrate-specific enzyme activase
2766	 58.87	0	3345538..3346281	+	247	158522783	-	Dole_2773	-	hypothetical protein
2767	 61.80	0	3346281..3347411	+	376	158522784	-	Dole_2774	-	2-hydroxyglutaryl-CoA dehydratase D-component
2768	 60.00	0	3347414..3348823	+	469	158522785	-	Dole_2775	-	2-hydroxyglutaryl-CoA dehydratase D-component
2769	 61.90	0	3349139..3349957	+	272	158522786	-	Dole_2776	-	putative CoA-substrate-specific enzyme activase
2770	 59.51	0	3350176..3350958	+	260	158522787	-	Dole_2777	-	cobyrinic acid ac-diamide synthase
2771	 37.90	-2	3352172..3352675	-	167	158522788	-	Dole_2778	-	hypothetical protein
2772	 58.94	0	3353790..3355019	-	409	158522789	-	Dole_2779	-	L,L-diaminopimelate aminotransferase
2773	 54.86	0	3355111..3355398	+	95	158522790	-	Dole_2780	-	hypothetical protein
2774	 60.27	0	3355450..3356121	+	223	158522791	-	Dole_2781	-	SNARE associated Golgi protein
2775	 61.22	0	3356393..3357568	-	391	158522792	-	Dole_2782	-	cell division protein FtsZ
2776	 61.76	0	3357634..3358857	-	407	158522793	-	Dole_2783	-	cell division protein FtsA
2777	 62.54	+1	3358839..3359735	-	298	158522794	-	Dole_2784	-	polypeptide-transport-associated domain-containing protein
2778	 64.44	+1	3359722..3360663	-	313	158522795	-	Dole_2785	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2779	 62.15	0	3360683..3362056	-	457	158522796	-	Dole_2786	-	UDP-N-acetylmuramate--alanine ligase
2780	 63.47	+1	3362047..3363204	-	385	158522797	-	Dole_2787	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
2781	 59.95	0	3363197..3364312	-	371	158522798	-	Dole_2788	-	cell division protein FtsW
2782	 61.88	0	3364299..3365678	-	459	158522799	-	Dole_2789	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
2783	 58.06	0	3365678..3366757	-	359	158522800	-	Dole_2790	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2784	 62.44	+1	3366760..3368178	-	472	158522801	-	Dole_2791	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
2785	 63.96	+1	3368209..3369798	-	529	158522802	-	Dole_2792	-	UDP-N-acetylmuramyl-tripeptide synthetase
2786	 60.82	0	3369795..3371555	-	586	158522803	-	Dole_2793	-	peptidoglycan glycosyltransferase
2787	 59.93	0	3371552..3371848	-	98	158522804	-	Dole_2794	-	hypothetical protein
2788	 60.81	0	3371865..3372803	-	312	158522805	-	Dole_2795	-	S-adenosyl-methyltransferase MraW
2789	 51.93	0	3372805..3373245	-	146	158522806	-	Dole_2796	-	MraZ protein
2790	 63.15	+1	3373488..3374483	+	331	158522807	-	Dole_2797	-	putative tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
2791	 61.48	0	3374604..3377150	+	848	158522808	-	Dole_2798	-	penicillin amidase
2792	 61.75	0	3377449..3378303	+	284	158522809	-	Dole_2799	-	alpha/beta hydrolase fold
2793	 60.50	0	3378320..3379390	-	356	158522810	-	Dole_2800	-	GTPase EngC
2794	 58.54	0	3379784..3381949	-	721	158522811	-	Dole_2801	-	copper-translocating P-type ATPase
2795	 56.45	0	3382148..3382783	-	211	158522812	-	Dole_2802	-	hypothetical protein
2796	 60.33	0	3382767..3383318	-	183	158522813	-	Dole_2803	-	protein of unknown function DUF395 YeeE/YedE
2797	 56.35	0	3383315..3383857	-	180	158522814	-	Dole_2804	-	hypothetical protein
2798	 55.83	0	3383860..3384948	-	362	158522815	-	Dole_2805	-	rhodanese domain-containing protein
2799	 53.16	0	3384964..3385437	-	157	158522816	-	Dole_2806	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
2800	 61.74	0	3386458..3387858	-	466	158522817	-	Dole_2807	-	two component, sigma54 specific, Fis family transcriptional regulator
2801	 62.02	0	3387855..3389642	-	595	158522818	-	Dole_2808	-	PAS/PAC sensor signal transduction histidine kinase
2802	 55.28	0	3390075..3390557	+	160	158522819	-	Dole_2809	-	hypothetical protein
2803	 54.95	0	3391049..3391432	+	127	158522820	-	Dole_2810	-	response regulator receiver protein
2804	 62.39	0	3391485..3392981	-	498	158522821	-	Dole_2811	-	multi-sensor signal transduction histidine kinase
2805	 59.27	0	3392971..3394458	-	495	158522822	-	Dole_2812	-	PAS/PAC sensor signal transduction histidine kinase
2806	 60.79	0	3394644..3396242	+	532	158522823	-	Dole_2813	-	D-3-phosphoglycerate dehydrogenase
2807	 50.15	-1	3396365..3396691	+	108	158522824	-	Dole_2814	-	hypothetical protein
2808	 59.40	0	3396688..3398145	+	485	158522825	-	Dole_2815	-	protease Do
2809	 58.39	0	3398264..3399121	+	285	158522826	-	Dole_2816	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
2810	 58.81	0	3399258..3400211	+	317	158522827	-	Dole_2817	-	ribose-phosphate pyrophosphokinase
2811	 57.49	0	3400263..3400916	+	217	158522828	-	Dole_2818	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
2812	 54.81	0	3400956..3401537	+	193	158522829	-	Dole_2819	-	aminoacyl-tRNA hydrolase
2813	 59.86	0	3401596..3403668	+	690	158522830	-	Dole_2820	-	membrane-bound proton-translocating pyrophosphatase
2814	 52.91	0	3403803..3404369	+	188	158522831	-	Dole_2821	-	CarD family transcriptional regulator
2815	 60.91	0	3404356..3405345	+	329	158522832	-	Dole_2822	-	RluA family pseudouridine synthase
2816	 58.48	0	3405389..3406267	+	292	158522833	-	Dole_2823	-	short chain dehydrogenase
2817	 60.82	0	3406264..3407340	+	358	158522834	-	Dole_2824	-	hypothetical protein
2818	 62.24	0	3407431..3409530	-	699	158522835	-	Dole_2825	-	electron transport complex, RnfABCDGE type, B subunit
2819	 57.47	0	3409567..3410142	-	191	158522836	-	Dole_2826	-	electron transport complex, RnfABCDGE type, A subunit
2820	 57.05	0	3410152..3410754	-	200	158522837	-	Dole_2827	-	SoxR-reducing system protein RsxE
2821	 60.41	0	3410770..3411360	-	196	158522838	-	Dole_2828	-	electron transport complex, RnfABCDGE type, G subunit
2822	 57.11	0	3411360..3412322	-	320	158522839	-	Dole_2829	-	electron transport complex, RnfABCDGE type, D subunit
2823	 60.75	0	3412312..3413595	-	427	158522840	-	Dole_2830	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2824	 58.38	0	3413659..3414213	-	184	158522841	-	Dole_2831	-	hypothetical protein
2825	 61.35	0	3414425..3415120	-	231	158522842	-	Dole_2832	-	transcriptional regulatory protein
2826	 57.61	0	3415265..3415540	-	91	158522843	-	Dole_2833	-	hypothetical protein
2827	 63.16	+1	3415809..3415979	+	56	158522844	-	Dole_2834	-	hypothetical protein
2828	 54.07	0	3416047..3416697	+	216	158522845	-	Dole_2835	-	hypothetical protein
2829	 58.76	0	3417413..3419170	-	585	158522846	-	Dole_2836	-	lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA
2830	 59.15	0	3419170..3420339	-	389	158522847	-	Dole_2837	-	lipid-A-disaccharide synthase
2831	 57.37	0	3420332..3421288	-	318	158522848	-	Dole_2838	-	oxidoreductase domain-containing protein
2832	 61.92	0	3421307..3422128	-	273	158522849	-	Dole_2839	-	hypothetical protein
2833	 58.63	0	3422247..3423017	-	256	158522850	-	Dole_2840	-	acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase
2834	 61.37	0	3423034..3423486	-	150	158522851	-	Dole_2841	-	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ
2835	 60.80	0	3423509..3424531	-	340	158522852	-	Dole_2842	-	UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
2836	 51.58	0	3424565..3425101	-	178	158522853	-	Dole_2843	-	outer membrane chaperone Skp (OmpH)
2837	 56.05	0	3425190..3427931	-	913	158522854	-	Dole_2844	-	surface antigen (D15)
2838	 60.32	0	3427933..3428673	-	246	158522855	-	Dole_2845	-	ABC transporter-related protein
2839	 56.81	0	3428666..3429892	-	408	158522856	-	Dole_2846	-	LolC/E family lipoprotein releasing system, transmembrane protein
2840	 59.93	0	3429935..3431389	-	484	158522857	-	Dole_2847	-	lysyl-tRNA synthetase
2841	 54.77	0	3431522..3432967	-	481	158522858	-	Dole_2848	-	histidine kinase
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.