IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2706	 38.78	-2	3271028..3272623	+	531	158522723	-	Dole_2713	-	hypothetical protein
2707	 42.64	-2	3272746..3273078	-	110	158522724	-	Dole_2714	-	hypothetical protein
2708	 41.20	-2	3273376..3274812	+	478	158522725	-	Dole_2715	-	hypothetical protein
2709	 48.04	-1	3275210..3275848	+	212	158522726	-	Dole_2716	-	TetR family transcriptional regulator
2710	 41.77	-2	3276074..3276832	+	252	158522727	-	Dole_2717	-	hypothetical protein
2711	 44.31	-2	3277263..3278027	+	254	158522728	-	Dole_2718	-	Sel1 domain-containing protein
2712	 47.19	-1	3279237..3280196	-	319	158522729	-	Dole_2719	-	hypothetical protein
2713	 40.60	-2	3280197..3281297	-	366	158522730	-	Dole_2720	-	hypothetical protein
2714	 49.12	-1	3281813..3282268	+	151	158522731	-	Dole_2721	-	hypothetical protein
2715	 36.55	-2	3282442..3283032	+	196	158522732	-	Dole_2722	-	hypothetical protein
2716	 34.04	-2	3283115..3283396	-	93	158522733	-	Dole_2723	-	hypothetical protein
2717	 51.62	0	3284305..3287115	+	936	158522734	-	Dole_2724	-	type III restriction protein res subunit
2718	 54.65	0	3287159..3288823	+	554	158522735	-	Dole_2725	-	N-6 DNA methylase
2719	 46.71	-1	3288820..3290322	+	500	158522736	-	Dole_2726	-	restriction modification system DNA specificity subunit
2720	 49.78	-1	3290335..3292140	+	601	158522737	-	Dole_2727	-	ABC transporter
2721	 48.90	-1	3292140..3293225	+	361	158522738	-	Dole_2728	-	hypothetical protein
2722	 39.90	-2	3293339..3293917	-	192	158522739	-	Dole_2729	-	ribonuclease H
2723	 37.60	-2	3294871..3295128	-	85	158522740	-	Dole_2730	-	hypothetical protein
2724	 40.30	-2	3295143..3295673	-	176	158522741	-	Dole_2731	-	hypothetical protein
2725	 33.33	-2	3296015..3296989	-	324	158522742	-	Dole_2732	-	hypothetical protein
2726	 41.04	-2	3299028..3299780	+	250	158522743	-	Dole_2733	-	hypothetical protein
2727	 43.29	-2	3300371..3301465	+	364	158522744	-	Dole_2734	-	integrase family protein
2728	 62.49	+1	3301659..3303191	-	510	158522745	-	Dole_2735	-	Mg chelatase, subunit ChlI
2729	 58.39	0	3303452..3304345	+	297	158522746	-	Dole_2736	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
2730	 55.32	0	3304603..3305175	+	190	158522747	-	Dole_2737	-	hypothetical protein
2731	 56.80	0	3305237..3307486	+	749	158522748	-	Dole_2738	-	PAS/PAC sensor signal transduction histidine kinase
2732	 56.12	0	3307518..3308873	+	451	158522749	-	Dole_2739	-	two component, sigma54 specific, Fis family transcriptional regulator
2733	 59.13	0	3308879..3309502	+	207	158522750	-	Dole_2740	-	putative methyltransferase
2734	 52.86	0	3309536..3310042	+	168	158522751	-	Dole_2741	-	pantetheine-phosphate adenylyltransferase
2735	 59.16	0	3310039..3310704	-	221	158522752	-	Dole_2742	-	protein-L-isoaspartate O-methyltransferase
2736	 55.29	0	3310928..3311929	+	333	158522753	-	Dole_2743	-	TrkA domain-containing protein
2737	 53.06	0	3312037..3312624	-	195	158522754	-	Dole_2744	-	5-formyltetrahydrofolate cyclo-ligase
2738	 57.43	0	3312836..3314113	+	425	158522755	-	Dole_2745	-	seryl-tRNA synthetase
2739	 59.50	0	3314110..3315615	+	501	158522756	-	Dole_2746	-	threonine synthase
2740	 52.61	0	3315612..3316358	+	248	158522757	-	Dole_2747	-	TPR repeat-containing protein
2741	 55.96	0	3316539..3317201	-	220	158522758	-	Dole_2748	-	abortive infection protein
2742	 59.78	0	3317281..3318297	-	338	158522759	-	Dole_2749	-	D-alanine--D-alanine ligase
2743	 43.03	-2	3318514..3318843	-	109	158522760	-	Dole_2750	-	HicB family protein
2744	 40.23	-2	3318827..3319087	-	86	158522761	-	Dole_2751	-	hypothetical protein
2745	 45.79	-1	3319575..3319871	-	98	158522762	-	Dole_2752	-	hypothetical protein
2746	 46.52	-1	3319868..3320140	-	90	158522763	-	Dole_2753	-	hypothetical protein
2747	 60.75	0	3320556..3321383	-	275	158522764	-	Dole_2754	-	short-chain dehydrogenase/reductase SDR
2748	 60.72	0	3321610..3324300	+	896	158522765	-	Dole_2755	-	CBS domain-containing protein
2749	 61.09	0	3324679..3325377	+	232	158522766	-	Dole_2756	-	peptidase M50
2750	 61.62	0	3325403..3326392	+	329	158522767	-	Dole_2757	-	tryptophanyl-tRNA synthetase
2751	 55.69	0	3326389..3327135	+	248	158522768	-	Dole_2758	-	chromosome segregation and condensation protein ScpA
2752	 61.22	0	3327132..3328031	+	299	158522769	-	Dole_2759	-	segregation and condensation protein B
2753	 53.33	0	3328268..3328792	+	174	158522770	-	Dole_2760	-	cyclic nucleotide-binding protein
2754	 60.74	0	3328822..3329868	+	348	158522771	-	Dole_2761	-	radical SAM domain-containing protein
2755	 59.72	0	3330001..3331224	-	407	158522772	-	Dole_2762	-	hypothetical protein
2756	 58.83	0	3331280..3332134	-	284	158522773	-	Dole_2763	-	substrate-binding region of ABC-type glycine betaine transport system
2757	 59.38	0	3332247..3333083	-	278	158522774	-	Dole_2764	-	binding-protein-dependent transport systems inner membrane component
2758	 59.92	0	3333076..3334275	-	399	158522775	-	Dole_2765	-	glycine betaine/L-proline ABC transporter, ATPase subunit
2759	 56.52	0	3334858..3338178	-	1106	158522776	-	Dole_2766	-	hypothetical protein
2760	 58.65	0	3338733..3339518	+	261	158522777	-	Dole_2767	-	GntR family transcriptional regulator
2761	 61.89	0	3339515..3340978	+	487	158522778	-	Dole_2768	-	hypothetical protein
2762	 58.77	0	3340980..3342119	+	379	158522779	-	Dole_2769	-	2-hydroxyglutaryl-CoA dehydratase D-component
2763	 57.39	0	3342147..3343547	+	466	158522780	-	Dole_2770	-	2-hydroxyglutaryl-CoA dehydratase D-component
2764	 60.32	0	3343544..3344347	+	267	158522781	-	Dole_2771	-	putative CoA-substrate-specific enzyme activase
2765	 60.54	0	3344344..3345126	+	260	158522782	-	Dole_2772	-	putative CoA-substrate-specific enzyme activase
2766	 58.87	0	3345538..3346281	+	247	158522783	-	Dole_2773	-	hypothetical protein
2767	 61.80	0	3346281..3347411	+	376	158522784	-	Dole_2774	-	2-hydroxyglutaryl-CoA dehydratase D-component
2768	 60.00	0	3347414..3348823	+	469	158522785	-	Dole_2775	-	2-hydroxyglutaryl-CoA dehydratase D-component
2769	 61.90	0	3349139..3349957	+	272	158522786	-	Dole_2776	-	putative CoA-substrate-specific enzyme activase
2770	 59.51	0	3350176..3350958	+	260	158522787	-	Dole_2777	-	cobyrinic acid ac-diamide synthase
2771	 37.90	-2	3352172..3352675	-	167	158522788	-	Dole_2778	-	hypothetical protein
2772	 58.94	0	3353790..3355019	-	409	158522789	-	Dole_2779	-	L,L-diaminopimelate aminotransferase
2773	 54.86	0	3355111..3355398	+	95	158522790	-	Dole_2780	-	hypothetical protein
2774	 60.27	0	3355450..3356121	+	223	158522791	-	Dole_2781	-	SNARE associated Golgi protein
2775	 61.22	0	3356393..3357568	-	391	158522792	-	Dole_2782	-	cell division protein FtsZ
2776	 61.76	0	3357634..3358857	-	407	158522793	-	Dole_2783	-	cell division protein FtsA
2777	 62.54	+1	3358839..3359735	-	298	158522794	-	Dole_2784	-	polypeptide-transport-associated domain-containing protein
2778	 64.44	+1	3359722..3360663	-	313	158522795	-	Dole_2785	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2779	 62.15	0	3360683..3362056	-	457	158522796	-	Dole_2786	-	UDP-N-acetylmuramate--alanine ligase
2780	 63.47	+1	3362047..3363204	-	385	158522797	-	Dole_2787	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
2781	 59.95	0	3363197..3364312	-	371	158522798	-	Dole_2788	-	cell division protein FtsW
2782	 61.88	0	3364299..3365678	-	459	158522799	-	Dole_2789	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
2783	 58.06	0	3365678..3366757	-	359	158522800	-	Dole_2790	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2784	 62.44	+1	3366760..3368178	-	472	158522801	-	Dole_2791	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
2785	 63.96	+1	3368209..3369798	-	529	158522802	-	Dole_2792	-	UDP-N-acetylmuramyl-tripeptide synthetase
2786	 60.82	0	3369795..3371555	-	586	158522803	-	Dole_2793	-	peptidoglycan glycosyltransferase
2787	 59.93	0	3371552..3371848	-	98	158522804	-	Dole_2794	-	hypothetical protein
2788	 60.81	0	3371865..3372803	-	312	158522805	-	Dole_2795	-	S-adenosyl-methyltransferase MraW
2789	 51.93	0	3372805..3373245	-	146	158522806	-	Dole_2796	-	MraZ protein
2790	 63.15	+1	3373488..3374483	+	331	158522807	-	Dole_2797	-	putative tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase
2791	 61.48	0	3374604..3377150	+	848	158522808	-	Dole_2798	-	penicillin amidase
2792	 61.75	0	3377449..3378303	+	284	158522809	-	Dole_2799	-	alpha/beta hydrolase fold
2793	 60.50	0	3378320..3379390	-	356	158522810	-	Dole_2800	-	GTPase EngC
2794	 58.54	0	3379784..3381949	-	721	158522811	-	Dole_2801	-	copper-translocating P-type ATPase
2795	 56.45	0	3382148..3382783	-	211	158522812	-	Dole_2802	-	hypothetical protein
2796	 60.33	0	3382767..3383318	-	183	158522813	-	Dole_2803	-	protein of unknown function DUF395 YeeE/YedE
2797	 56.35	0	3383315..3383857	-	180	158522814	-	Dole_2804	-	hypothetical protein
2798	 55.83	0	3383860..3384948	-	362	158522815	-	Dole_2805	-	rhodanese domain-containing protein
2799	 53.16	0	3384964..3385437	-	157	158522816	-	Dole_2806	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
2800	 61.74	0	3386458..3387858	-	466	158522817	-	Dole_2807	-	two component, sigma54 specific, Fis family transcriptional regulator
2801	 62.02	0	3387855..3389642	-	595	158522818	-	Dole_2808	-	PAS/PAC sensor signal transduction histidine kinase
2802	 55.28	0	3390075..3390557	+	160	158522819	-	Dole_2809	-	hypothetical protein
2803	 54.95	0	3391049..3391432	+	127	158522820	-	Dole_2810	-	response regulator receiver protein
2804	 62.39	0	3391485..3392981	-	498	158522821	-	Dole_2811	-	multi-sensor signal transduction histidine kinase
2805	 59.27	0	3392971..3394458	-	495	158522822	-	Dole_2812	-	PAS/PAC sensor signal transduction histidine kinase
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.