version 1.0
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167 3265 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2674 58.77 0 3223461..3224144 + 227 158522691 - Dole_2681 - hypothetical protein 2675 57.64 0 3224153..3224584 - 143 158522692 - Dole_2682 - hypothetical protein 2676 61.85 0 3224789..3227530 - 913 158522693 - Dole_2683 - von Willebrand factor type A 2677 60.95 0 3227718..3228557 - 279 158522694 - Dole_2684 - ATPase 2678 61.43 0 3228750..3229913 + 387 158522695 - Dole_2685 - TraB family protein 2679 57.04 0 3230124..3232325 + 733 158522696 - Dole_2686 - type IV pilus assembly PilZ 2680 57.14 0 3232502..3232816 + 104 158522697 - Dole_2687 - anti-sigma-factor antagonist 2681 56.99 0 3232949..3234136 - 395 158522698 - Dole_2688 - hypothetical protein 2682 57.41 0 3234361..3236391 + 676 158522699 - Dole_2689 - SH3 type 3 domain-containing protein 2683 57.79 0 3236388..3240521 - 1377 158522700 - Dole_2690 - hypothetical protein 2684 63.44 +1 3240939..3241712 - 257 158522701 - Dole_2691 - cell wall hydrolase/autolysin 2685 55.33 0 3242028..3243359 + 443 158522702 - Dole_2692 - trigger factor 2686 56.96 0 3243387..3244004 + 205 158522703 - Dole_2693 - ATP-dependent Clp protease, proteolytic subunit ClpP 2687 57.89 0 3244007..3245260 + 417 158522704 - Dole_2694 - ATP-dependent protease ATP-binding subunit 2688 59.15 0 3245324..3247759 + 811 158522705 - Dole_2695 - ATP-dependent protease La 2689 59.60 0 3248071..3250659 - 862 158522706 - Dole_2696 - ATPase 2690 53.58 0 3250950..3251438 - 162 158522707 - Dole_2697 - SsrA-binding protein 2691 56.87 0 3251452..3253227 - 591 158522708 - Dole_2698 - phosphoenolpyruvate-protein phosphotransferase 2692 55.32 0 3253234..3253515 - 93 158522709 - Dole_2699 - phosphotransferase system, phosphocarrier protein HPr 2693 57.81 0 3253775..3257083 + 1102 158522710 - Dole_2700 - PAS/PAC sensor hybrid histidine kinase 2694 61.60 0 3257355..3260078 + 907 158522711 - Dole_2701 - ATPase, P-type (transporting), HAD superfamily, subfamily IC 2695 54.89 0 3260130..3261581 - 483 158522712 - Dole_2702 - hypothetical protein 2696 41.59 -2 3262117..3262782 + 221 158522713 - Dole_2703 - hypothetical protein 2697 40.47 -2 3262819..3265059 + 746 158522714 - Dole_2704 - bifunctional DNA primase/polymerase 2698 36.93 -2 3265375..3265902 - 175 158522715 - Dole_2705 - hypothetical protein 2699 38.76 -2 3265928..3266443 - 171 158522716 - Dole_2706 - hypothetical protein 2700 41.57 -2 3266606..3267139 - 177 158522717 - Dole_2707 - hypothetical protein 2701 40.21 -2 3267478..3267666 - 62 158522718 - Dole_2708 - hypothetical protein 2702 42.97 -2 3267778..3268410 - 210 158522719 - Dole_2709 - integrase family protein 2703 33.71 -2 3268768..3269823 - 351 158522720 - Dole_2710 - hypothetical protein 2704 38.64 -2 3270159..3270497 - 112 158522721 - Dole_2711 - XRE family transcriptional regulator 2705 42.80 -2 3270715..3270957 + 80 158522722 - Dole_2712 - hypothetical protein 2706 38.78 -2 3271028..3272623 + 531 158522723 - Dole_2713 - hypothetical protein 2707 42.64 -2 3272746..3273078 - 110 158522724 - Dole_2714 - hypothetical protein 2708 41.20 -2 3273376..3274812 + 478 158522725 - Dole_2715 - hypothetical protein 2709 48.04 -1 3275210..3275848 + 212 158522726 - Dole_2716 - TetR family transcriptional regulator 2710 41.77 -2 3276074..3276832 + 252 158522727 - Dole_2717 - hypothetical protein 2711 44.31 -2 3277263..3278027 + 254 158522728 - Dole_2718 - Sel1 domain-containing protein 2712 47.19 -1 3279237..3280196 - 319 158522729 - Dole_2719 - hypothetical protein 2713 40.60 -2 3280197..3281297 - 366 158522730 - Dole_2720 - hypothetical protein 2714 49.12 -1 3281813..3282268 + 151 158522731 - Dole_2721 - hypothetical protein 2715 36.55 -2 3282442..3283032 + 196 158522732 - Dole_2722 - hypothetical protein 2716 34.04 -2 3283115..3283396 - 93 158522733 - Dole_2723 - hypothetical protein 2717 51.62 0 3284305..3287115 + 936 158522734 - Dole_2724 - type III restriction protein res subunit 2718 54.65 0 3287159..3288823 + 554 158522735 - Dole_2725 - N-6 DNA methylase 2719 46.71 -1 3288820..3290322 + 500 158522736 - Dole_2726 - restriction modification system DNA specificity subunit 2720 49.78 -1 3290335..3292140 + 601 158522737 - Dole_2727 - ABC transporter 2721 48.90 -1 3292140..3293225 + 361 158522738 - Dole_2728 - hypothetical protein 2722 39.90 -2 3293339..3293917 - 192 158522739 - Dole_2729 - ribonuclease H 2723 37.60 -2 3294871..3295128 - 85 158522740 - Dole_2730 - hypothetical protein 2724 40.30 -2 3295143..3295673 - 176 158522741 - Dole_2731 - hypothetical protein 2725 33.33 -2 3296015..3296989 - 324 158522742 - Dole_2732 - hypothetical protein 2726 41.04 -2 3299028..3299780 + 250 158522743 - Dole_2733 - hypothetical protein 2727 43.29 -2 3300371..3301465 + 364 158522744 - Dole_2734 - integrase family protein 2728 62.49 +1 3301659..3303191 - 510 158522745 - Dole_2735 - Mg chelatase, subunit ChlI 2729 58.39 0 3303452..3304345 + 297 158522746 - Dole_2736 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2730 55.32 0 3304603..3305175 + 190 158522747 - Dole_2737 - hypothetical protein 2731 56.80 0 3305237..3307486 + 749 158522748 - Dole_2738 - PAS/PAC sensor signal transduction histidine kinase 2732 56.12 0 3307518..3308873 + 451 158522749 - Dole_2739 - two component, sigma54 specific, Fis family transcriptional regulator 2733 59.13 0 3308879..3309502 + 207 158522750 - Dole_2740 - putative methyltransferase 2734 52.86 0 3309536..3310042 + 168 158522751 - Dole_2741 - pantetheine-phosphate adenylyltransferase 2735 59.16 0 3310039..3310704 - 221 158522752 - Dole_2742 - protein-L-isoaspartate O-methyltransferase 2736 55.29 0 3310928..3311929 + 333 158522753 - Dole_2743 - TrkA domain-containing protein 2737 53.06 0 3312037..3312624 - 195 158522754 - Dole_2744 - 5-formyltetrahydrofolate cyclo-ligase 2738 57.43 0 3312836..3314113 + 425 158522755 - Dole_2745 - seryl-tRNA synthetase 2739 59.50 0 3314110..3315615 + 501 158522756 - Dole_2746 - threonine synthase 2740 52.61 0 3315612..3316358 + 248 158522757 - Dole_2747 - TPR repeat-containing protein 2741 55.96 0 3316539..3317201 - 220 158522758 - Dole_2748 - abortive infection protein 2742 59.78 0 3317281..3318297 - 338 158522759 - Dole_2749 - D-alanine--D-alanine ligase 2743 43.03 -2 3318514..3318843 - 109 158522760 - Dole_2750 - HicB family protein 2744 40.23 -2 3318827..3319087 - 86 158522761 - Dole_2751 - hypothetical protein 2745 45.79 -1 3319575..3319871 - 98 158522762 - Dole_2752 - hypothetical protein 2746 46.52 -1 3319868..3320140 - 90 158522763 - Dole_2753 - hypothetical protein 2747 60.75 0 3320556..3321383 - 275 158522764 - Dole_2754 - short-chain dehydrogenase/reductase SDR 2748 60.72 0 3321610..3324300 + 896 158522765 - Dole_2755 - CBS domain-containing protein 2749 61.09 0 3324679..3325377 + 232 158522766 - Dole_2756 - peptidase M50 2750 61.62 0 3325403..3326392 + 329 158522767 - Dole_2757 - tryptophanyl-tRNA synthetase 2751 55.69 0 3326389..3327135 + 248 158522768 - Dole_2758 - chromosome segregation and condensation protein ScpA 2752 61.22 0 3327132..3328031 + 299 158522769 - Dole_2759 - segregation and condensation protein B 2753 53.33 0 3328268..3328792 + 174 158522770 - Dole_2760 - cyclic nucleotide-binding protein 2754 60.74 0 3328822..3329868 + 348 158522771 - Dole_2761 - radical SAM domain-containing protein 2755 59.72 0 3330001..3331224 - 407 158522772 - Dole_2762 - hypothetical protein 2756 58.83 0 3331280..3332134 - 284 158522773 - Dole_2763 - substrate-binding region of ABC-type glycine betaine transport system 2757 59.38 0 3332247..3333083 - 278 158522774 - Dole_2764 - binding-protein-dependent transport systems inner membrane component 2758 59.92 0 3333076..3334275 - 399 158522775 - Dole_2765 - glycine betaine/L-proline ABC transporter, ATPase subunit 2759 56.52 0 3334858..3338178 - 1106 158522776 - Dole_2766 - hypothetical protein 2760 58.65 0 3338733..3339518 + 261 158522777 - Dole_2767 - GntR family transcriptional regulator 2761 61.89 0 3339515..3340978 + 487 158522778 - Dole_2768 - hypothetical protein 2762 58.77 0 3340980..3342119 + 379 158522779 - Dole_2769 - 2-hydroxyglutaryl-CoA dehydratase D-component 2763 57.39 0 3342147..3343547 + 466 158522780 - Dole_2770 - 2-hydroxyglutaryl-CoA dehydratase D-component 2764 60.32 0 3343544..3344347 + 267 158522781 - Dole_2771 - putative CoA-substrate-specific enzyme activase 2765 60.54 0 3344344..3345126 + 260 158522782 - Dole_2772 - putative CoA-substrate-specific enzyme activase 2766 58.87 0 3345538..3346281 + 247 158522783 - Dole_2773 - hypothetical protein 2767 61.80 0 3346281..3347411 + 376 158522784 - Dole_2774 - 2-hydroxyglutaryl-CoA dehydratase D-component 2768 60.00 0 3347414..3348823 + 469 158522785 - Dole_2775 - 2-hydroxyglutaryl-CoA dehydratase D-component 2769 61.90 0 3349139..3349957 + 272 158522786 - Dole_2776 - putative CoA-substrate-specific enzyme activase 2770 59.51 0 3350176..3350958 + 260 158522787 - Dole_2777 - cobyrinic acid ac-diamide synthase 2771 37.90 -2 3352172..3352675 - 167 158522788 - Dole_2778 - hypothetical protein 2772 58.94 0 3353790..3355019 - 409 158522789 - Dole_2779 - L,L-diaminopimelate aminotransferase 2773 54.86 0 3355111..3355398 + 95 158522790 - Dole_2780 - hypothetical protein 56.47 MEAN 5.93 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0