IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2658	 55.14	0	3205834..3206631	+	265	158522675	-	Dole_2665	-	hypothetical protein
2659	 63.17	+1	3206650..3207822	-	390	158522676	-	Dole_2666	-	beta-lactamase
2660	 62.61	+1	3207833..3208867	-	344	158522677	-	Dole_2667	-	dihydrodipicolinate synthase
2661	 55.23	0	3209130..3209750	+	206	158522678	-	Dole_2668	-	TPR repeat-containing protein
2662	 58.52	0	3209852..3211165	+	437	158522679	-	Dole_2669	-	sulfite reductase, dissimilatory-type alpha subunit
2663	 58.53	0	3211180..3212334	+	384	158522680	-	Dole_2670	-	sulfite reductase, dissimilatory-type beta subunit
2664	 51.41	0	3212405..3212653	+	82	158522681	-	Dole_2671	-	dissimilatory sulfite reductase D
2665	 61.47	0	3212714..3214117	+	467	158522682	-	Dole_2672	-	cobyrinic acid a,c-diamide synthase
2666	 61.92	0	3214361..3216571	-	736	158522683	-	Dole_2673	-	RecD/TraA family helicase
2667	 60.88	0	3216568..3217155	-	195	158522684	-	Dole_2674	-	histidinol-phosphate phosphatase family protein
2668	 59.73	0	3217152..3217901	-	249	158522685	-	Dole_2675	-	rare lipoprotein A
2669	 58.68	0	3218034..3219197	+	387	158522686	-	Dole_2676	-	major facilitator transporter
2670	 55.90	0	3219224..3220300	+	358	158522687	-	Dole_2677	-	hypothetical protein
2671	 55.94	0	3220297..3221172	+	291	158522688	-	Dole_2678	-	hypothetical protein
2672	 58.66	0	3221169..3222380	+	403	158522689	-	Dole_2679	-	Mur ligase middle domain-containing protein
2673	 57.59	0	3222477..3223445	+	322	158522690	-	Dole_2680	-	ExsB family protein
2674	 58.77	0	3223461..3224144	+	227	158522691	-	Dole_2681	-	hypothetical protein
2675	 57.64	0	3224153..3224584	-	143	158522692	-	Dole_2682	-	hypothetical protein
2676	 61.85	0	3224789..3227530	-	913	158522693	-	Dole_2683	-	von Willebrand factor type A
2677	 60.95	0	3227718..3228557	-	279	158522694	-	Dole_2684	-	ATPase
2678	 61.43	0	3228750..3229913	+	387	158522695	-	Dole_2685	-	TraB family protein
2679	 57.04	0	3230124..3232325	+	733	158522696	-	Dole_2686	-	type IV pilus assembly PilZ
2680	 57.14	0	3232502..3232816	+	104	158522697	-	Dole_2687	-	anti-sigma-factor antagonist
2681	 56.99	0	3232949..3234136	-	395	158522698	-	Dole_2688	-	hypothetical protein
2682	 57.41	0	3234361..3236391	+	676	158522699	-	Dole_2689	-	SH3 type 3 domain-containing protein
2683	 57.79	0	3236388..3240521	-	1377	158522700	-	Dole_2690	-	hypothetical protein
2684	 63.44	+1	3240939..3241712	-	257	158522701	-	Dole_2691	-	cell wall hydrolase/autolysin
2685	 55.33	0	3242028..3243359	+	443	158522702	-	Dole_2692	-	trigger factor
2686	 56.96	0	3243387..3244004	+	205	158522703	-	Dole_2693	-	ATP-dependent Clp protease, proteolytic subunit ClpP
2687	 57.89	0	3244007..3245260	+	417	158522704	-	Dole_2694	-	ATP-dependent protease ATP-binding subunit
2688	 59.15	0	3245324..3247759	+	811	158522705	-	Dole_2695	-	ATP-dependent protease La
2689	 59.60	0	3248071..3250659	-	862	158522706	-	Dole_2696	-	ATPase
2690	 53.58	0	3250950..3251438	-	162	158522707	-	Dole_2697	-	SsrA-binding protein
2691	 56.87	0	3251452..3253227	-	591	158522708	-	Dole_2698	-	phosphoenolpyruvate-protein phosphotransferase
2692	 55.32	0	3253234..3253515	-	93	158522709	-	Dole_2699	-	phosphotransferase system, phosphocarrier protein HPr
2693	 57.81	0	3253775..3257083	+	1102	158522710	-	Dole_2700	-	PAS/PAC sensor hybrid histidine kinase
2694	 61.60	0	3257355..3260078	+	907	158522711	-	Dole_2701	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
2695	 54.89	0	3260130..3261581	-	483	158522712	-	Dole_2702	-	hypothetical protein
2696	 41.59	-2	3262117..3262782	+	221	158522713	-	Dole_2703	-	hypothetical protein
2697	 40.47	-2	3262819..3265059	+	746	158522714	-	Dole_2704	-	bifunctional DNA primase/polymerase
2698	 36.93	-2	3265375..3265902	-	175	158522715	-	Dole_2705	-	hypothetical protein
2699	 38.76	-2	3265928..3266443	-	171	158522716	-	Dole_2706	-	hypothetical protein
2700	 41.57	-2	3266606..3267139	-	177	158522717	-	Dole_2707	-	hypothetical protein
2701	 40.21	-2	3267478..3267666	-	62	158522718	-	Dole_2708	-	hypothetical protein
2702	 42.97	-2	3267778..3268410	-	210	158522719	-	Dole_2709	-	integrase family protein
2703	 33.71	-2	3268768..3269823	-	351	158522720	-	Dole_2710	-	hypothetical protein
2704	 38.64	-2	3270159..3270497	-	112	158522721	-	Dole_2711	-	XRE family transcriptional regulator
2705	 42.80	-2	3270715..3270957	+	80	158522722	-	Dole_2712	-	hypothetical protein
2706	 38.78	-2	3271028..3272623	+	531	158522723	-	Dole_2713	-	hypothetical protein
2707	 42.64	-2	3272746..3273078	-	110	158522724	-	Dole_2714	-	hypothetical protein
2708	 41.20	-2	3273376..3274812	+	478	158522725	-	Dole_2715	-	hypothetical protein
2709	 48.04	-1	3275210..3275848	+	212	158522726	-	Dole_2716	-	TetR family transcriptional regulator
2710	 41.77	-2	3276074..3276832	+	252	158522727	-	Dole_2717	-	hypothetical protein
2711	 44.31	-2	3277263..3278027	+	254	158522728	-	Dole_2718	-	Sel1 domain-containing protein
2712	 47.19	-1	3279237..3280196	-	319	158522729	-	Dole_2719	-	hypothetical protein
2713	 40.60	-2	3280197..3281297	-	366	158522730	-	Dole_2720	-	hypothetical protein
2714	 49.12	-1	3281813..3282268	+	151	158522731	-	Dole_2721	-	hypothetical protein
2715	 36.55	-2	3282442..3283032	+	196	158522732	-	Dole_2722	-	hypothetical protein
2716	 34.04	-2	3283115..3283396	-	93	158522733	-	Dole_2723	-	hypothetical protein
2717	 51.62	0	3284305..3287115	+	936	158522734	-	Dole_2724	-	type III restriction protein res subunit
2718	 54.65	0	3287159..3288823	+	554	158522735	-	Dole_2725	-	N-6 DNA methylase
2719	 46.71	-1	3288820..3290322	+	500	158522736	-	Dole_2726	-	restriction modification system DNA specificity subunit
2720	 49.78	-1	3290335..3292140	+	601	158522737	-	Dole_2727	-	ABC transporter
2721	 48.90	-1	3292140..3293225	+	361	158522738	-	Dole_2728	-	hypothetical protein
2722	 39.90	-2	3293339..3293917	-	192	158522739	-	Dole_2729	-	ribonuclease H
2723	 37.60	-2	3294871..3295128	-	85	158522740	-	Dole_2730	-	hypothetical protein
2724	 40.30	-2	3295143..3295673	-	176	158522741	-	Dole_2731	-	hypothetical protein
2725	 33.33	-2	3296015..3296989	-	324	158522742	-	Dole_2732	-	hypothetical protein
2726	 41.04	-2	3299028..3299780	+	250	158522743	-	Dole_2733	-	hypothetical protein
2727	 43.29	-2	3300371..3301465	+	364	158522744	-	Dole_2734	-	integrase family protein
2728	 62.49	+1	3301659..3303191	-	510	158522745	-	Dole_2735	-	Mg chelatase, subunit ChlI
2729	 58.39	0	3303452..3304345	+	297	158522746	-	Dole_2736	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
2730	 55.32	0	3304603..3305175	+	190	158522747	-	Dole_2737	-	hypothetical protein
2731	 56.80	0	3305237..3307486	+	749	158522748	-	Dole_2738	-	PAS/PAC sensor signal transduction histidine kinase
2732	 56.12	0	3307518..3308873	+	451	158522749	-	Dole_2739	-	two component, sigma54 specific, Fis family transcriptional regulator
2733	 59.13	0	3308879..3309502	+	207	158522750	-	Dole_2740	-	putative methyltransferase
2734	 52.86	0	3309536..3310042	+	168	158522751	-	Dole_2741	-	pantetheine-phosphate adenylyltransferase
2735	 59.16	0	3310039..3310704	-	221	158522752	-	Dole_2742	-	protein-L-isoaspartate O-methyltransferase
2736	 55.29	0	3310928..3311929	+	333	158522753	-	Dole_2743	-	TrkA domain-containing protein
2737	 53.06	0	3312037..3312624	-	195	158522754	-	Dole_2744	-	5-formyltetrahydrofolate cyclo-ligase
2738	 57.43	0	3312836..3314113	+	425	158522755	-	Dole_2745	-	seryl-tRNA synthetase
2739	 59.50	0	3314110..3315615	+	501	158522756	-	Dole_2746	-	threonine synthase
2740	 52.61	0	3315612..3316358	+	248	158522757	-	Dole_2747	-	TPR repeat-containing protein
2741	 55.96	0	3316539..3317201	-	220	158522758	-	Dole_2748	-	abortive infection protein
2742	 59.78	0	3317281..3318297	-	338	158522759	-	Dole_2749	-	D-alanine--D-alanine ligase
2743	 43.03	-2	3318514..3318843	-	109	158522760	-	Dole_2750	-	HicB family protein
2744	 40.23	-2	3318827..3319087	-	86	158522761	-	Dole_2751	-	hypothetical protein
2745	 45.79	-1	3319575..3319871	-	98	158522762	-	Dole_2752	-	hypothetical protein
2746	 46.52	-1	3319868..3320140	-	90	158522763	-	Dole_2753	-	hypothetical protein
2747	 60.75	0	3320556..3321383	-	275	158522764	-	Dole_2754	-	short-chain dehydrogenase/reductase SDR
2748	 60.72	0	3321610..3324300	+	896	158522765	-	Dole_2755	-	CBS domain-containing protein
2749	 61.09	0	3324679..3325377	+	232	158522766	-	Dole_2756	-	peptidase M50
2750	 61.62	0	3325403..3326392	+	329	158522767	-	Dole_2757	-	tryptophanyl-tRNA synthetase
2751	 55.69	0	3326389..3327135	+	248	158522768	-	Dole_2758	-	chromosome segregation and condensation protein ScpA
2752	 61.22	0	3327132..3328031	+	299	158522769	-	Dole_2759	-	segregation and condensation protein B
2753	 53.33	0	3328268..3328792	+	174	158522770	-	Dole_2760	-	cyclic nucleotide-binding protein
2754	 60.74	0	3328822..3329868	+	348	158522771	-	Dole_2761	-	radical SAM domain-containing protein
2755	 59.72	0	3330001..3331224	-	407	158522772	-	Dole_2762	-	hypothetical protein
2756	 58.83	0	3331280..3332134	-	284	158522773	-	Dole_2763	-	substrate-binding region of ABC-type glycine betaine transport system
2757	 59.38	0	3332247..3333083	-	278	158522774	-	Dole_2764	-	binding-protein-dependent transport systems inner membrane component
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.