IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
212	 60.69	0	233500..234420	+	306	158520229	-	Dole_0212	-	ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
213	 60.61	0	234410..235168	+	252	158520230	-	Dole_0213	-	binding-protein-dependent transport systems inner membrane component
214	 57.88	0	235165..236256	+	363	158520231	-	Dole_0214	-	ABC transporter-related protein
215	 60.49	0	236378..237106	+	242	158520232	-	Dole_0215	-	hypothetical protein
216	 50.41	-1	237312..237557	+	81	158520233	-	Dole_0216	-	hypothetical protein
217	 56.55	0	237669..238706	-	345	158520234	-	Dole_0217	-	lipid-binding START domain-containing protein
218	 59.73	0	238924..239370	+	148	158520235	-	Dole_0218	-	hypothetical protein
219	 57.18	0	239438..241240	+	600	158520236	-	Dole_0219	-	radical SAM domain-containing protein
220	 51.79	0	241252..241419	+	55	158520237	-	Dole_0220	-	hypothetical protein
221	 59.52	0	241716..245924	+	1402	158520238	-	Dole_0221	-	pyruvate phosphate dikinase PEP/pyruvate-binding
222	 60.13	0	246005..247258	+	417	158520239	-	Dole_0222	-	glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)
223	 58.59	0	247351..247746	+	131	158520240	-	Dole_0223	-	response regulator receiver protein
224	 60.97	0	247845..249020	-	391	158520241	-	Dole_0224	-	acetyl-CoA acetyltransferase
225	 56.89	0	249046..250896	-	616	158520242	-	Dole_0225	-	AMP-dependent synthetase and ligase
226	 53.83	0	251032..251592	-	186	158520243	-	Dole_0226	-	sterol-binding domain-containing protein
227	 42.17	-2	251659..251907	+	82	158520244	-	Dole_0227	-	hypothetical protein
228	 48.54	-1	251955..252572	+	205	158520245	-	Dole_0228	-	TetR family transcriptional regulator
229	 61.73	0	252624..253778	-	384	158520246	-	Dole_0229	-	DNA-directed DNA polymerase
230	 62.04	0	253885..254403	-	172	158520247	-	Dole_0230	-	hypothetical protein
231	 61.70	0	254396..255181	-	261	158520248	-	Dole_0231	-	hypothetical protein
232	 58.23	0	255885..256868	+	327	158520249	-	Dole_0232	-	hypothetical protein
233	 50.79	0	256865..257626	+	253	158520250	-	Dole_0233	-	hypothetical protein
234	 56.08	0	258242..258874	+	210	158520251	-	Dole_0234	-	LexA family transcriptional regulator
235	 60.17	0	258905..259720	+	271	158520252	-	Dole_0235	-	hypothetical protein
236	 64.26	+1	259717..260922	+	401	158520253	-	Dole_0236	-	DNA-directed DNA polymerase
237	 60.86	0	260928..263939	+	1003	158520254	-	Dole_0237	-	DNA polymerase III, alpha subunit
238	 36.38	-2	264050..265327	+	425	158520255	-	Dole_0238	-	hypothetical protein
239	 55.89	0	265545..266537	-	330	158520256	-	Dole_0239	-	transcriptional regulator-like protein
240	 52.30	0	266668..268929	+	753	158520257	-	Dole_0240	-	ATPase central domain-containing protein
241	 57.48	0	269095..270585	+	496	158520258	-	Dole_0241	-	hypothetical protein
242	 35.82	-2	270853..271938	-	361	158520259	-	Dole_0242	-	hypothetical protein
243	 49.44	-1	272158..273219	-	353	158520260	-	Dole_0243	-	hypothetical protein
244	 52.23	0	273252..274013	-	253	158520261	-	Dole_0244	-	hypothetical protein
245	 55.18	0	274010..277126	-	1038	158520262	-	Dole_0245	-	HsdR family type I site-specific deoxyribonuclease
246	 56.33	0	277119..279092	-	657	158520263	-	Dole_0246	-	hypothetical protein
247	 42.38	-2	279465..281609	-	714	158520264	-	Dole_0247	-	hypothetical protein
248	 43.56	-2	281606..283453	-	615	158520265	-	Dole_0248	-	hypothetical protein
249	 49.41	-1	283450..284631	-	393	158520266	-	Dole_0249	-	restriction modification system DNA specificity subunit
250	 54.17	0	284628..285779	-	383	158520267	-	Dole_0250	-	putative transcriptional regulator
251	 56.28	0	285776..288202	-	808	158520268	-	Dole_0251	-	type I restriction-modification system, M subunit
252	 46.11	-1	288729..289730	+	333	158520269	-	Dole_0252	-	hypothetical protein
253	 56.10	0	289727..290275	+	182	158520270	-	Dole_0253	-	cell division GTPase-like protein
254	 52.33	0	290333..290890	+	185	158520271	-	Dole_0254	-	hypothetical protein
255	 54.80	0	290877..291491	+	204	158520272	-	Dole_0255	-	tubulin/FtsZ GTPase
256	 45.36	-1	291527..292033	+	168	158520273	-	Dole_0256	-	hypothetical protein
257	 54.14	0	292089..292511	+	140	158520274	-	Dole_0257	-	hypothetical protein
258	 48.27	-1	292508..293143	+	211	158520275	-	Dole_0258	-	hypothetical protein
259	 41.80	-2	293145..294113	+	322	158520276	-	Dole_0259	-	hypothetical protein
260	 53.24	0	294125..295450	+	441	158520277	-	Dole_0260	-	beta-lactamase domain-containing protein
261	 54.90	0	295666..299319	+	1217	158520278	-	Dole_0261	-	DNA polymerase III, alpha subunit
262	 57.07	0	299412..300380	+	322	158520279	-	Dole_0262	-	hypothetical protein
263	 35.32	-2	300384..300938	-	184	158520280	-	Dole_0263	-	GCN5-related N-acetyltransferase
264	 54.55	0	301074..301667	-	197	158520281	-	Dole_0264	-	hypothetical protein
265	 55.31	0	302163..303782	+	539	158520282	-	Dole_0265	-	ADP-ribosylation/crystallin J1
266	 58.93	0	304254..305339	-	361	158520283	-	Dole_0266	-	amine oxidase
267	 58.78	0	305854..306462	+	202	158520284	-	Dole_0267	-	hypothetical protein
268	 58.76	0	306709..308604	+	631	158520285	-	Dole_0268	-	PpiC-type peptidyl-prolyl cis-trans isomerase
269	 55.16	0	308652..308903	+	83	158520286	-	Dole_0269	-	hypothetical protein
270	 57.71	0	308974..309252	+	92	158520287	-	Dole_0270	-	hypothetical protein
271	 61.15	0	309555..310406	+	283	158520288	-	Dole_0271	-	3-hydroxybutyryl-CoA dehydrogenase
272	 58.19	0	310421..310597	+	58	158520289	-	Dole_0272	-	hypothetical protein
273	 59.92	0	310875..311600	-	241	158520290	-	Dole_0273	-	integral membrane protein TerC
274	 48.01	-1	312270..314300	+	676	158520291	-	Dole_0274	-	radical SAM domain-containing protein
275	 34.69	-2	314319..316082	+	587	158520292	-	Dole_0275	-	TPR repeat-containing protein
276	 49.94	-1	316441..318150	+	569	158520293	-	Dole_0276	-	N-6 DNA methylase
277	 42.59	-2	318150..319391	+	413	158520294	-	Dole_0277	-	restriction modification system DNA specificity subunit
278	 48.99	-1	319388..322357	+	989	158520295	-	Dole_0278	-	hypothetical protein
279	 43.49	-2	322487..323608	+	373	158520296	-	Dole_0279	-	hypothetical protein
280	 42.88	-2	323605..324348	+	247	158520297	-	Dole_0280	-	Gp37Gp68 family protein
281	 53.37	0	325517..326140	+	207	158520298	-	Dole_0281	-	hypothetical protein
282	 52.38	0	326227..327066	+	279	158520299	-	Dole_0282	-	hypothetical protein
283	 52.35	0	327183..328139	+	318	158520300	-	Dole_0283	-	hypothetical protein
284	 45.31	-1	328213..328404	+	63	158520301	-	Dole_0284	-	hypothetical protein
285	 49.40	-1	328431..328598	+	55	158520302	-	Dole_0285	-	hypothetical protein
286	 52.60	0	328964..329290	+	108	158520303	-	Dole_0286	-	HIRAN
287	 48.68	-1	329447..330964	+	505	158520304	-	Dole_0287	-	hypothetical protein
288	 45.13	-1	331373..332584	+	403	158520305	-	Dole_0288	-	integrase family protein
289	 60.58	0	332755..333066	-	103	158520306	-	Dole_0289	-	hypothetical protein
290	 57.92	0	333067..333672	-	201	158520307	-	Dole_0290	-	phosphoserine phosphatase
291	 61.20	0	333695..335011	-	438	158520308	-	Dole_0291	-	homoserine dehydrogenase
292	 57.82	0	335021..336196	-	391	158520309	-	Dole_0292	-	aminotransferase class I and II
293	 57.06	0	336565..337605	+	346	158520310	-	Dole_0293	-	phosphoribosylformylglycinamidine cyclo-ligase
294	 63.07	+1	337944..339026	+	360	158520311	-	Dole_0294	-	metalloendopeptidase glycoprotease family
295	 62.02	0	339512..340543	-	343	158520312	-	Dole_0295	-	Beta-N-acetylhexosaminidase
296	 60.63	0	340580..341374	-	264	158520313	-	Dole_0296	-	hypothetical protein
297	 54.05	0	341403..342242	-	279	158520314	-	Dole_0297	-	FkbM family methyltransferase
298	 59.04	0	342744..343412	+	222	158520315	-	Dole_0298	-	hydrogenase accessory protein HypB
299	 62.43	+1	343453..344301	+	282	158520316	-	Dole_0299	-	hypothetical protein
300	 61.80	0	344402..345388	+	328	158520317	-	Dole_0300	-	iron-sulfur cluster-binding protein
301	 56.99	0	345388..345852	+	154	158520318	-	Dole_0301	-	hypothetical protein
302	 56.10	0	346015..347349	-	444	158520319	-	Dole_0302	-	hypothetical protein
303	 56.05	0	347399..348076	-	225	158520320	-	Dole_0303	-	hypothetical protein
304	 59.18	0	348093..349361	-	422	158520321	-	Dole_0304	-	hypothetical protein
305	 60.32	0	349426..350103	-	225	158520322	-	Dole_0305	-	cytochrome c class III
306	 62.42	+1	350375..351739	+	454	158520323	-	Dole_0306	-	electron transport complex, RnfABCDGE type, C subunit
307	 63.21	+1	351770..352783	+	337	158520324	-	Dole_0307	-	electron transport complex, RnfABCDGE type, D subunit
308	 56.33	0	352828..353427	+	199	158520325	-	Dole_0308	-	FMN-binding domain-containing protein
309	 57.53	0	353467..354090	+	207	158520326	-	Dole_0309	-	RnfA-Nqr electron transport subunit
310	 56.64	0	354109..354876	+	255	158520327	-	Dole_0310	-	RnfA-Nqr electron transport subunit
311	 62.39	0	354914..355825	+	303	158520328	-	Dole_0311	-	electron transport complex, RnfABCDGE type, B subunit
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.