IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2450	 59.44	0	2970885..2971784	+	299	158522467	-	Dole_2456	-	hypothetical protein
2451	 49.95	-1	2971868..2972884	-	338	158522468	-	Dole_2457	-	transposase IS4 family protein
2452	 61.56	0	2973044..2977153	+	1369	158522469	-	Dole_2458	-	outer membrane autotransporter
2453	 61.32	0	2977358..2978479	+	373	158522470	-	Dole_2459	-	hypothetical protein
2454	 53.64	0	2978654..2979766	+	370	158522471	-	Dole_2460	-	hypothetical protein
2455	 54.41	0	2979777..2981024	+	415	158522472	-	Dole_2461	-	radical SAM domain-containing protein
2456	 50.75	0	2981067..2982737	+	556	158522473	-	Dole_2462	-	hypothetical protein
2457	 58.12	0	2982820..2983767	-	315	158522474	-	Dole_2463	-	ribonuclease III
2458	 56.92	0	2983782..2984786	-	334	158522475	-	Dole_2464	-	hypothetical protein
2459	 57.93	0	2984965..2987139	+	724	158522476	-	Dole_2465	-	DegT/DnrJ/EryC1/StrS aminotransferase
2460	 55.97	0	2987201..2990023	+	940	158522477	-	Dole_2466	-	hypothetical protein
2461	 58.60	0	2990007..2990762	-	251	158522478	-	Dole_2467	-	glycosyl transferase family protein
2462	 58.71	0	2991193..2992323	+	376	158522479	-	Dole_2468	-	hypothetical protein
2463	 56.54	0	2992289..2993641	+	450	158522480	-	Dole_2469	-	hypothetical protein
2464	 62.08	0	2993656..2995401	+	581	158522481	-	Dole_2470	-	TPR repeat-containing protein
2465	 58.49	0	2995519..2997450	+	643	158522482	-	Dole_2471	-	TPR repeat-containing protein
2466	 59.65	0	2997559..2999082	+	507	158522483	-	Dole_2472	-	radical SAM domain-containing protein
2467	 56.57	0	2999088..3000494	-	468	158522484	-	Dole_2473	-	radical SAM domain-containing protein
2468	 54.55	0	3001291..3002256	+	321	158522485	-	Dole_2474	-	RNA polymerase sigma 70 family subunit
2469	 59.61	0	3002260..3004158	+	632	158522486	-	Dole_2475	-	peptidoglycan-binding LysM
2470	 60.41	0	3004155..3004937	+	260	158522487	-	Dole_2476	-	hypothetical protein
2471	 55.83	0	3005456..3005935	-	159	158522488	-	Dole_2477	-	UspA domain-containing protein
2472	 54.64	0	3005960..3006874	-	304	158522489	-	Dole_2478	-	hypothetical protein
2473	 55.26	0	3006878..3007447	-	189	158522490	-	Dole_2479	-	putative phytochrome sensor protein
2474	 62.72	+1	3007444..3008253	-	269	158522491	-	Dole_2480	-	leucyltransferase
2475	 61.04	0	3008228..3010483	-	751	158522492	-	Dole_2481	-	ATP-dependent Clp protease, ATP-binding subunit clpA
2476	 54.29	0	3010756..3011070	-	104	158522493	-	Dole_2482	-	ATP-dependent Clp protease adaptor protein ClpS
2477	 58.99	0	3011330..3013909	-	859	158522494	-	Dole_2483	-	preprotein translocase, SecA subunit
2478	 60.30	0	3014057..3014998	-	313	158522495	-	Dole_2484	-	peptidase M23B
2479	 60.11	0	3015129..3015692	-	187	158522496	-	Dole_2485	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2480	 59.22	0	3015753..3016397	-	214	158522497	-	Dole_2486	-	putative transaldolase
2481	 61.85	0	3016432..3016701	-	89	158522498	-	Dole_2487	-	TRASH domain-containing protein
2482	 61.96	0	3016698..3017249	-	183	158522499	-	Dole_2488	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2483	 62.50	+1	3017242..3017673	-	143	158522500	-	Dole_2489	-	fibronectin type III domain-containing protein
2484	 62.17	0	3017663..3019063	-	466	158522501	-	Dole_2490	-	argininosuccinate lyase
2485	 59.92	0	3019377..3020576	-	399	158522502	-	Dole_2491	-	argininosuccinate synthase
2486	 60.24	0	3020738..3021655	-	305	158522503	-	Dole_2492	-	ornithine carbamoyltransferase
2487	 61.14	0	3021686..3022879	-	397	158522504	-	Dole_2493	-	acetylornithine and succinylornithine aminotransferase
2488	 59.82	0	3023017..3023892	-	291	158522505	-	Dole_2494	-	acetylglutamate kinase
2489	 62.22	0	3023953..3025323	-	456	158522506	-	Dole_2495	-	ATP-dependent protease ATP-binding subunit
2490	 66.49	+1	3025358..3025915	-	185	158522507	-	Dole_2496	-	ATP-dependent protease peptidase subunit
2491	 59.65	0	3025896..3026822	-	308	158522508	-	Dole_2497	-	integrase family protein
2492	 60.26	0	3026854..3027243	-	129	158522509	-	Dole_2498	-	hypothetical protein
2493	 53.61	0	3027448..3028182	-	244	158522510	-	Dole_2499	-	1-acylglycerol-3-phosphate O-acyltransferase
2494	 59.23	0	3028256..3029398	-	380	158522511	-	Dole_2500	-	acyl-CoA dehydrogenase domain-containing protein
2495	 54.28	0	3030033..3031760	+	575	158522512	-	Dole_2501	-	aldehyde ferredoxin oxidoreductase
2496	 47.88	-1	3031914..3032243	+	109	158522513	-	Dole_2502	-	thiamineS protein
2497	 55.42	0	3032233..3032472	+	79	158522514	-	Dole_2503	-	thiamineS protein
2498	 53.85	0	3032472..3033329	+	285	158522515	-	Dole_2504	-	UBA/THIF-type NAD/FAD binding protein
2499	 42.97	-2	3033723..3034718	+	331	158522516	-	Dole_2505	-	hypothetical protein
2500	 40.74	-2	3035321..3036562	+	413	158522517	-	Dole_2506	-	serine/threonine protein kinase
2501	 32.70	-2	3037742..3038533	+	263	158522518	-	Dole_2507	-	hypothetical protein
2502	 47.93	-1	3038704..3039114	+	136	158522519	-	Dole_2508	-	hypothetical protein
2503	 63.74	+1	3039213..3039896	-	227	158522520	-	Dole_2509	-	uracil-DNA glycosylase superfamily protein
2504	 61.11	0	3040080..3040853	+	257	158522521	-	Dole_2510	-	cobyrinic acid ac-diamide synthase
2505	 64.93	+1	3040847..3042865	+	672	158522522	-	Dole_2511	-	electron transport complex, RnfABCDGE type, B subunit
2506	 60.78	0	3042906..3043364	+	152	158522523	-	Dole_2512	-	positive regulator of sigma E, RseC/MucC
2507	 64.44	+1	3043377..3044453	-	358	158522524	-	Dole_2513	-	lysine 2,3-aminomutase YodO family protein
2508	 55.67	0	3044559..3045149	+	196	158522525	-	Dole_2514	-	DNA-3-methyladenine glycosylase I
2509	 57.20	0	3045146..3046423	+	425	158522526	-	Dole_2515	-	glycosyl transferase group 1
2510	 61.43	0	3046440..3048158	+	572	158522527	-	Dole_2516	-	DNA repair protein RecN
2511	 61.43	0	3048489..3049271	-	260	158522528	-	Dole_2517	-	phosphomethylpyrimidine kinase
2512	 60.94	0	3049349..3049942	-	197	158522529	-	Dole_2518	-	metal-binding protein-like protein
2513	 56.69	0	3049939..3050349	-	136	158522530	-	Dole_2519	-	hypothetical protein
2514	 56.37	0	3050504..3051202	-	232	158522531	-	Dole_2520	-	endonuclease/exonuclease/phosphatase
2515	 58.74	0	3051216..3053360	-	714	158522532	-	Dole_2521	-	phospholipase D
2516	 52.54	0	3053930..3054382	+	150	158522533	-	Dole_2522	-	heat shock protein Hsp20
2517	 58.50	0	3054554..3055876	+	440	158522534	-	Dole_2523	-	hypothetical protein
2518	 61.16	0	3055916..3057514	+	532	158522535	-	Dole_2524	-	hypothetical protein
2519	 61.32	0	3057514..3058410	+	298	158522536	-	Dole_2525	-	dTDP-4-dehydrorhamnose reductase
2520	 63.10	+1	3058653..3059549	+	298	158522537	-	Dole_2526	-	enoyl-CoA hydratase/isomerase
2521	 60.62	0	3059725..3061179	-	484	158522538	-	Dole_2527	-	hypothetical protein
2522	 56.75	0	3061251..3061865	-	204	158522539	-	Dole_2528	-	hypothetical protein
2523	 56.40	0	3062099..3062692	+	197	158522540	-	Dole_2529	-	hypothetical protein
2524	 57.41	0	3062673..3063050	+	125	158522541	-	Dole_2530	-	hypothetical protein
2525	 61.42	0	3063132..3063569	+	145	158522542	-	Dole_2531	-	hypothetical protein
2526	 58.25	0	3063635..3064585	+	316	158522543	-	Dole_2532	-	hypothetical protein
2527	 59.62	0	3065107..3066510	+	467	158522544	-	Dole_2533	-	glutamyl-tRNA synthetase
2528	 59.96	0	3066913..3069327	-	804	158522545	-	Dole_2534	-	1A family penicillin-binding protein
2529	 64.41	+1	3069486..3070991	-	501	158522546	-	Dole_2535	-	amidase
2530	 61.74	0	3071258..3072598	+	446	158522547	-	Dole_2536	-	Na(+)-translocating NADH-quinone reductase subunit A
2531	 62.44	+1	3072595..3073776	+	393	158522548	-	Dole_2537	-	Na(+)-translocating NADH-quinone reductase subunit B
2532	 56.99	0	3073927..3074670	+	247	158522549	-	Dole_2538	-	NADH:ubiquinone oxidoreductase, subunit C
2533	 59.87	0	3074700..3075317	+	205	158522550	-	Dole_2539	-	NADH:ubiquinone oxidoreductase, subunit D
2534	 56.65	0	3075319..3075927	+	202	158522551	-	Dole_2540	-	NADH:ubiquinone oxidoreductase, subunit E
2535	 59.30	0	3076021..3077241	+	406	158522552	-	Dole_2541	-	Na(+)-translocating NADH-quinone reductase subunit F
2536	 60.54	0	3077521..3077961	+	146	158522553	-	Dole_2542	-	hypothetical protein
2537	 54.87	0	3077958..3078830	+	290	158522554	-	Dole_2543	-	hypothetical protein
2538	 62.16	0	3079075..3079695	+	206	158522555	-	Dole_2544	-	TetR family transcriptional regulator
2539	 61.08	0	3079772..3080899	+	375	158522556	-	Dole_2545	-	HEAT repeat-containing PBS lyase
2540	 57.01	0	3081108..3081770	+	220	158522557	-	Dole_2546	-	hypothetical protein
2541	 62.78	+1	3081835..3083970	+	711	158522558	-	Dole_2547	-	molybdopterin oxidoreductase
2542	 60.68	0	3083990..3084808	+	272	158522559	-	Dole_2548	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2543	 60.10	0	3084875..3086107	+	410	158522560	-	Dole_2549	-	polysulphide reductase NrfD
2544	 56.55	0	3086142..3086309	+	55	158522561	-	Dole_2550	-	hypothetical protein
2545	 61.24	0	3086565..3087818	+	417	158522562	-	Dole_2551	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2546	 53.30	0	3087898..3088593	-	231	158522563	-	Dole_2552	-	SNARE associated Golgi protein
2547	 59.63	0	3088987..3089796	-	269	158522564	-	Dole_2553	-	hypothetical protein
2548	 58.86	0	3090023..3090880	+	285	158522565	-	Dole_2554	-	short-chain dehydrogenase/reductase SDR
2549	 59.97	0	3090932..3091678	+	248	158522566	-	Dole_2555	-	enoyl-CoA hydratase/isomerase
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.