IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2391	 59.78	0	2888109..2888921	-	270	158522408	-	Dole_2397	-	hypothetical protein
2392	 60.66	0	2888956..2889771	-	271	158522409	-	Dole_2398	-	response regulator receiver protein
2393	 62.12	0	2889799..2891625	-	608	158522410	-	Dole_2399	-	TrkA domain-containing protein
2394	 58.61	0	2891688..2892134	-	148	158522411	-	Dole_2400	-	hypothetical protein
2395	 63.19	+1	2892349..2893698	-	449	158522412	-	Dole_2401	-	two component, sigma54 specific, Fis family transcriptional regulator
2396	 56.67	0	2893793..2894152	-	119	158522413	-	Dole_2402	-	hypothetical protein
2397	 58.08	0	2894180..2894470	-	96	158522414	-	Dole_2403	-	GntR family transcriptional regulator
2398	 59.06	0	2894699..2896000	+	433	158522415	-	Dole_2404	-	glucose-methanol-choline oxidoreductase
2399	 58.37	0	2896051..2896797	-	248	158522416	-	Dole_2405	-	glycosyl transferase family protein
2400	 62.01	0	2897208..2898344	+	378	158522417	-	Dole_2406	-	hypothetical protein
2401	 55.93	0	2898358..2899773	-	471	158522418	-	Dole_2407	-	radical SAM domain-containing protein
2402	 56.48	0	2899888..2901468	-	526	158522419	-	Dole_2408	-	hypothetical protein
2403	 52.13	0	2901477..2902205	-	242	158522420	-	Dole_2409	-	peptidylprolyl isomerase FKBP-type
2404	 54.44	0	2902320..2904266	+	648	158522421	-	Dole_2410	-	TPR repeat-containing protein
2405	 54.18	0	2904263..2905792	+	509	158522422	-	Dole_2411	-	hypothetical protein
2406	 55.22	0	2905789..2906478	+	229	158522423	-	Dole_2412	-	glycosyl transferase family protein
2407	 54.10	0	2906556..2908337	-	593	158522424	-	Dole_2413	-	TPR repeat-containing protein
2408	 60.34	0	2908334..2910103	-	589	158522425	-	Dole_2414	-	TPR repeat-containing protein
2409	 57.79	0	2910233..2912293	-	686	158522426	-	Dole_2415	-	TPR repeat-containing protein
2410	 57.80	0	2912298..2913707	-	469	158522427	-	Dole_2416	-	radical SAM domain-containing protein
2411	 57.54	0	2913887..2916175	+	762	158522428	-	Dole_2417	-	TPR repeat-containing protein
2412	 57.65	0	2916172..2918655	+	827	158522429	-	Dole_2418	-	TPR repeat-containing protein
2413	 58.22	0	2918652..2921030	+	792	158522430	-	Dole_2419	-	TPR repeat-containing protein
2414	 59.43	0	2921534..2922058	+	174	158522431	-	Dole_2420	-	hypothetical protein
2415	 60.28	0	2922174..2922956	+	260	158522432	-	Dole_2421	-	hypothetical protein
2416	 53.31	0	2923243..2923998	+	251	158522433	-	Dole_2422	-	peptidase C39 bacteriocin processing
2417	 59.74	0	2924015..2926063	+	682	158522434	-	Dole_2423	-	SH3 type 3 domain-containing protein
2418	 58.86	0	2926088..2927830	+	580	158522435	-	Dole_2424	-	membrane protein involved in aromatic hydrocarbon degradation
2419	 55.48	0	2928028..2929698	+	556	158522436	-	Dole_2425	-	hypothetical protein
2420	 62.55	+1	2929790..2930566	-	258	158522437	-	Dole_2426	-	ribulose-1,5-biphosphate synthetase
2421	 65.03	+1	2930646..2931926	-	426	158522438	-	Dole_2427	-	thiamine biosynthesis protein ThiC
2422	 56.35	0	2932473..2933906	+	477	158522439	-	Dole_2428	-	radical SAM domain-containing protein
2423	 61.17	0	2934001..2935455	+	484	158522440	-	Dole_2429	-	hypothetical protein
2424	 62.65	+1	2935439..2937553	+	704	158522441	-	Dole_2430	-	spermine synthase
2425	 61.29	0	2937531..2938721	+	396	158522442	-	Dole_2431	-	radical SAM domain-containing protein
2426	 57.59	0	2938865..2940472	+	535	158522443	-	Dole_2432	-	radical SAM domain-containing protein
2427	 58.58	0	2940502..2942010	-	502	158522444	-	Dole_2433	-	radical SAM domain-containing protein
2428	 58.48	0	2942007..2943569	-	520	158522445	-	Dole_2434	-	radical SAM domain-containing protein
2429	 54.16	0	2943570..2945144	-	524	158522446	-	Dole_2435	-	radical SAM domain-containing protein
2430	 55.81	0	2945429..2945695	+	88	158522447	-	Dole_2436	-	ribosomal protein S20
2431	 61.99	0	2945760..2946293	-	177	158522448	-	Dole_2437	-	hypothetical protein
2432	 60.85	0	2946608..2949205	-	865	158522449	-	Dole_2438	-	leucyl-tRNA synthetase
2433	 60.13	0	2949534..2951033	+	499	158522450	-	Dole_2439	-	ribonuclease
2434	 57.98	0	2951123..2951905	+	260	158522451	-	Dole_2440	-	hypothetical protein
2435	 55.10	0	2951999..2952292	+	97	158522452	-	Dole_2441	-	preprotein translocase, YajC subunit
2436	 60.89	0	2952318..2953892	+	524	158522453	-	Dole_2442	-	protein-export membrane protein SecD
2437	 56.42	0	2953917..2954960	+	347	158522454	-	Dole_2443	-	preprotein translocase subunit SecF
2438	 63.42	+1	2955310..2956479	+	389	158522455	-	Dole_2444	-	DNA protecting protein DprA
2439	 58.37	0	2956710..2958986	+	758	158522456	-	Dole_2445	-	DNA topoisomerase I
2440	 59.44	0	2959008..2960819	+	603	158522457	-	Dole_2446	-	chloride channel core
2441	 56.59	0	2961314..2962543	+	409	158522458	-	Dole_2447	-	diguanylate cyclase with PAS/PAC sensor
2442	 60.18	0	2962653..2962991	-	112	158522459	-	Dole_2448	-	histidine triad (HIT) protein
2443	 55.76	0	2963033..2963518	+	161	158522460	-	Dole_2449	-	hypothetical protein
2444	 62.13	0	2963759..2964442	+	227	158522461	-	Dole_2450	-	cell division ATP-binding protein FtsE
2445	 57.48	0	2964439..2965320	+	293	158522462	-	Dole_2451	-	hypothetical protein
2446	 59.32	0	2965383..2966675	+	430	158522463	-	Dole_2452	-	peptidase M23B
2447	 58.41	0	2966725..2968092	+	455	158522464	-	Dole_2453	-	carboxyl-terminal protease
2448	 64.35	+1	2968117..2969064	+	315	158522465	-	Dole_2454	-	protein of unknown function DUF610 YibQ
2449	 60.62	0	2969565..2970473	-	302	158522466	-	Dole_2455	-	ribosomal protein L11 methyltransferase
2450	 59.44	0	2970885..2971784	+	299	158522467	-	Dole_2456	-	hypothetical protein
2451	 49.95	-1	2971868..2972884	-	338	158522468	-	Dole_2457	-	transposase IS4 family protein
2452	 61.56	0	2973044..2977153	+	1369	158522469	-	Dole_2458	-	outer membrane autotransporter
2453	 61.32	0	2977358..2978479	+	373	158522470	-	Dole_2459	-	hypothetical protein
2454	 53.64	0	2978654..2979766	+	370	158522471	-	Dole_2460	-	hypothetical protein
2455	 54.41	0	2979777..2981024	+	415	158522472	-	Dole_2461	-	radical SAM domain-containing protein
2456	 50.75	0	2981067..2982737	+	556	158522473	-	Dole_2462	-	hypothetical protein
2457	 58.12	0	2982820..2983767	-	315	158522474	-	Dole_2463	-	ribonuclease III
2458	 56.92	0	2983782..2984786	-	334	158522475	-	Dole_2464	-	hypothetical protein
2459	 57.93	0	2984965..2987139	+	724	158522476	-	Dole_2465	-	DegT/DnrJ/EryC1/StrS aminotransferase
2460	 55.97	0	2987201..2990023	+	940	158522477	-	Dole_2466	-	hypothetical protein
2461	 58.60	0	2990007..2990762	-	251	158522478	-	Dole_2467	-	glycosyl transferase family protein
2462	 58.71	0	2991193..2992323	+	376	158522479	-	Dole_2468	-	hypothetical protein
2463	 56.54	0	2992289..2993641	+	450	158522480	-	Dole_2469	-	hypothetical protein
2464	 62.08	0	2993656..2995401	+	581	158522481	-	Dole_2470	-	TPR repeat-containing protein
2465	 58.49	0	2995519..2997450	+	643	158522482	-	Dole_2471	-	TPR repeat-containing protein
2466	 59.65	0	2997559..2999082	+	507	158522483	-	Dole_2472	-	radical SAM domain-containing protein
2467	 56.57	0	2999088..3000494	-	468	158522484	-	Dole_2473	-	radical SAM domain-containing protein
2468	 54.55	0	3001291..3002256	+	321	158522485	-	Dole_2474	-	RNA polymerase sigma 70 family subunit
2469	 59.61	0	3002260..3004158	+	632	158522486	-	Dole_2475	-	peptidoglycan-binding LysM
2470	 60.41	0	3004155..3004937	+	260	158522487	-	Dole_2476	-	hypothetical protein
2471	 55.83	0	3005456..3005935	-	159	158522488	-	Dole_2477	-	UspA domain-containing protein
2472	 54.64	0	3005960..3006874	-	304	158522489	-	Dole_2478	-	hypothetical protein
2473	 55.26	0	3006878..3007447	-	189	158522490	-	Dole_2479	-	putative phytochrome sensor protein
2474	 62.72	+1	3007444..3008253	-	269	158522491	-	Dole_2480	-	leucyltransferase
2475	 61.04	0	3008228..3010483	-	751	158522492	-	Dole_2481	-	ATP-dependent Clp protease, ATP-binding subunit clpA
2476	 54.29	0	3010756..3011070	-	104	158522493	-	Dole_2482	-	ATP-dependent Clp protease adaptor protein ClpS
2477	 58.99	0	3011330..3013909	-	859	158522494	-	Dole_2483	-	preprotein translocase, SecA subunit
2478	 60.30	0	3014057..3014998	-	313	158522495	-	Dole_2484	-	peptidase M23B
2479	 60.11	0	3015129..3015692	-	187	158522496	-	Dole_2485	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2480	 59.22	0	3015753..3016397	-	214	158522497	-	Dole_2486	-	putative transaldolase
2481	 61.85	0	3016432..3016701	-	89	158522498	-	Dole_2487	-	TRASH domain-containing protein
2482	 61.96	0	3016698..3017249	-	183	158522499	-	Dole_2488	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2483	 62.50	+1	3017242..3017673	-	143	158522500	-	Dole_2489	-	fibronectin type III domain-containing protein
2484	 62.17	0	3017663..3019063	-	466	158522501	-	Dole_2490	-	argininosuccinate lyase
2485	 59.92	0	3019377..3020576	-	399	158522502	-	Dole_2491	-	argininosuccinate synthase
2486	 60.24	0	3020738..3021655	-	305	158522503	-	Dole_2492	-	ornithine carbamoyltransferase
2487	 61.14	0	3021686..3022879	-	397	158522504	-	Dole_2493	-	acetylornithine and succinylornithine aminotransferase
2488	 59.82	0	3023017..3023892	-	291	158522505	-	Dole_2494	-	acetylglutamate kinase
2489	 62.22	0	3023953..3025323	-	456	158522506	-	Dole_2495	-	ATP-dependent protease ATP-binding subunit
2490	 66.49	+1	3025358..3025915	-	185	158522507	-	Dole_2496	-	ATP-dependent protease peptidase subunit
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.