IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2303	 59.04	0	2795304..2795552	-	82	158522320	-	Dole_2309	-	ribosomal protein S16
2304	 60.44	0	2795568..2796899	-	443	158522321	-	Dole_2310	-	signal recognition particle protein
2305	 57.62	0	2797071..2798186	+	371	158522322	-	Dole_2311	-	radical SAM protein
2306	 54.94	0	2798196..2798792	+	198	158522323	-	Dole_2312	-	putative adenylyl cyclase CyaB
2307	 51.86	0	2799019..2800551	+	510	158522324	-	Dole_2313	-	Fis family transcriptional regulator
2308	 52.99	0	2800958..2801425	+	155	158522325	-	Dole_2314	-	response regulator receiver protein
2309	 53.30	0	2801764..2803140	+	458	158522326	-	Dole_2315	-	diguanylate cyclase with PAS/PAC sensor
2310	 44.44	-2	2803507..2803686	+	59	158522327	-	Dole_2316	-	CsbD family protein
2311	 53.07	0	2803700..2803927	+	75	158522328	-	Dole_2317	-	hypothetical protein
2312	 53.15	0	2803972..2804193	+	73	158522329	-	Dole_2318	-	hypothetical protein
2313	 45.69	-1	2804289..2804636	+	115	158522330	-	Dole_2319	-	antibiotic biosynthesis monooxygenase
2314	 43.59	-2	2805177..2805488	+	103	158522331	-	Dole_2320	-	hypothetical protein
2315	 50.68	0	2805504..2805797	-	97	158522332	-	Dole_2321	-	FHA domain-containing protein
2316	 57.87	0	2805913..2806344	-	143	158522333	-	Dole_2322	-	amino acid-binding ACT domain-containing protein
2317	 60.60	0	2806380..2807681	-	433	158522334	-	Dole_2323	-	phenylacetate--CoA ligase
2318	 56.65	0	2807965..2808972	-	335	158522335	-	Dole_2324	-	NAD-dependent epimerase/dehydratase
2319	 54.29	0	2809063..2809377	-	104	158522336	-	Dole_2325	-	hypothetical protein
2320	 52.52	0	2809367..2809684	-	105	158522337	-	Dole_2326	-	septum formation initiator
2321	 61.81	0	2809662..2811248	-	528	158522338	-	Dole_2327	-	integral membrane protein MviN
2322	 54.95	0	2811433..2812875	-	480	158522339	-	Dole_2328	-	phospholipase D/transphosphatidylase
2323	 59.71	0	2812885..2813631	-	248	158522340	-	Dole_2329	-	endonuclease/exonuclease/phosphatase
2324	 56.20	0	2813657..2814535	-	292	158522341	-	Dole_2330	-	methylenetetrahydrofolate reductase (NAD(P)H)
2325	 56.41	0	2814850..2815278	-	142	158522342	-	Dole_2331	-	response regulator receiver protein
2326	 59.64	0	2815341..2816009	-	222	158522343	-	Dole_2332	-	histidine kinase A domain-containing protein
2327	 56.78	0	2816021..2816374	-	117	158522344	-	Dole_2333	-	response regulator receiver protein
2328	 56.92	0	2816371..2818134	-	587	158522345	-	Dole_2334	-	histidine kinase
2329	 59.79	0	2818172..2819407	-	411	158522346	-	Dole_2335	-	response regulator receiver protein
2330	 59.90	0	2819441..2821552	-	703	158522347	-	Dole_2336	-	sulfate transporter
2331	 52.43	0	2821753..2822328	-	191	158522348	-	Dole_2337	-	TetR family transcriptional regulator
2332	 59.57	0	2822594..2823199	+	201	158522349	-	Dole_2338	-	CBS domain-containing protein
2333	 57.88	0	2823196..2824617	+	473	158522350	-	Dole_2339	-	hexapaptide repeat-containing transferase
2334	 37.28	-2	2825044..2825601	+	185	158522351	-	Dole_2340	-	hypothetical protein
2335	 58.26	0	2825704..2826036	+	110	158522352	-	Dole_2341	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
2336	 54.27	0	2826090..2826323	+	77	158522353	-	Dole_2342	-	CopG/DNA-binding domain-containing protein
2337	 54.73	0	2826308..2826709	+	133	158522354	-	Dole_2343	-	PilT domain-containing protein
2338	 63.27	+1	2826697..2826843	-	48	158522355	-	Dole_2344	-	hypothetical protein
2339	 41.36	-2	2827232..2827879	+	215	158522356	-	Dole_2345	-	hypothetical protein
2340	 43.07	-2	2827869..2830457	+	862	158522357	-	Dole_2346	-	hypothetical protein
2341	 56.92	0	2830606..2830923	+	105	158522358	-	Dole_2347	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
2342	 61.32	0	2830942..2833110	-	722	158522359	-	Dole_2348	-	RecD/TraA family helicase
2343	 60.49	0	2833282..2834559	-	425	158522360	-	Dole_2349	-	DEAD/DEAH box helicase domain-containing protein
2344	 60.28	0	2835249..2835812	-	187	158522361	-	Dole_2350	-	hypothetical protein
2345	 64.17	+1	2836032..2836793	+	253	158522362	-	Dole_2351	-	histidine biosynthesis protein
2346	 62.03	0	2836808..2838295	+	495	158522363	-	Dole_2352	-	FAD dependent oxidoreductase
2347	 62.91	+1	2838320..2838958	-	212	158522364	-	Dole_2353	-	hypothetical protein
2348	 55.56	0	2838995..2839498	-	167	158522365	-	Dole_2354	-	hypothetical protein
2349	 61.46	0	2839488..2840888	-	466	158522366	-	Dole_2355	-	RNA modification protein
2350	 59.76	0	2840906..2841325	-	139	158522367	-	Dole_2356	-	hypothetical protein
2351	 56.22	0	2841368..2841616	-	82	158522368	-	Dole_2357	-	hypothetical protein
2352	 54.26	0	2841662..2842225	-	187	158522369	-	Dole_2358	-	translation elongation factor P
2353	 60.28	0	2842309..2843091	-	260	158522370	-	Dole_2359	-	N-(5'phosphoribosyl)anthranilate isomerase (PRAI)
2354	 61.50	0	2843103..2845136	-	677	158522371	-	Dole_2360	-	hypothetical protein
2355	 57.32	0	2845120..2845932	-	270	158522372	-	Dole_2361	-	FkbM family methyltransferase
2356	 56.47	0	2846026..2846976	+	316	158522373	-	Dole_2362	-	hypothetical protein
2357	 54.30	0	2847020..2847763	-	247	158522374	-	Dole_2363	-	lipid-binding START domain-containing protein
2358	 60.08	0	2847979..2849040	+	353	158522375	-	Dole_2364	-	CaCA family Na(+)/Ca(+) antiporter
2359	 58.88	0	2849207..2849977	-	256	158522376	-	Dole_2365	-	enoyl-CoA hydratase/isomerase
2360	 59.19	0	2850075..2851880	-	601	158522377	-	Dole_2366	-	acyl-CoA dehydrogenase domain-containing protein
2361	 54.68	0	2851935..2852543	-	202	158522378	-	Dole_2367	-	TetR family transcriptional regulator
2362	 61.45	0	2852753..2853748	-	331	158522379	-	Dole_2368	-	nuclease
2363	 59.41	0	2853845..2854726	-	293	158522380	-	Dole_2369	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2364	 57.65	0	2854754..2855119	-	121	158522381	-	Dole_2370	-	type IV pilus assembly PilZ
2365	 55.76	0	2855136..2856299	-	387	158522382	-	Dole_2371	-	cyclic nucleotide-binding protein
2366	 53.33	0	2856319..2856933	-	204	158522383	-	Dole_2372	-	gliding motility protein (MglA)
2367	 53.97	0	2857055..2857936	-	293	158522384	-	Dole_2373	-	hypothetical protein
2368	 61.32	0	2858496..2859431	+	311	158522385	-	Dole_2374	-	malate dehydrogenase, NAD-dependent
2369	 62.89	+1	2859650..2861530	-	626	158522386	-	Dole_2375	-	excinuclease ABC, C subunit
2370	 62.12	0	2861743..2863743	-	666	158522387	-	Dole_2376	-	excinuclease ABC subunit B
2371	 62.84	+1	2863799..2864923	-	374	158522388	-	Dole_2377	-	hypothetical protein
2372	 60.48	0	2864934..2866874	-	646	158522389	-	Dole_2378	-	hypothetical protein
2373	 64.71	+1	2867073..2867480	+	135	158522390	-	Dole_2379	-	hypothetical protein
2374	 58.64	0	2867502..2868734	-	410	158522391	-	Dole_2380	-	diguanylate cyclase
2375	 57.71	0	2868796..2870727	-	643	158522392	-	Dole_2381	-	Na/Pi-cotransporter II-related protein
2376	 58.79	0	2870747..2872675	-	642	158522393	-	Dole_2382	-	hypothetical protein
2377	 56.33	0	2872703..2873176	-	157	158522394	-	Dole_2383	-	hypothetical protein
2378	 59.92	0	2873566..2876187	+	873	158522395	-	Dole_2384	-	hypothetical protein
2379	 55.13	0	2876169..2876402	+	77	158522396	-	Dole_2385	-	hypothetical protein
2380	 58.20	0	2876441..2876818	+	125	158522397	-	Dole_2386	-	hypothetical protein
2381	 58.75	0	2876992..2878380	-	462	158522398	-	Dole_2387	-	hypothetical protein
2382	 53.26	0	2878373..2879782	-	469	158522399	-	Dole_2388	-	hypothetical protein
2383	 58.82	0	2880113..2880775	+	220	158522400	-	Dole_2389	-	methyltransferase type 11
2384	 55.74	0	2880779..2880961	+	60	158522401	-	Dole_2390	-	hypothetical protein
2385	 57.14	0	2880958..2881923	+	321	158522402	-	Dole_2391	-	hypothetical protein
2386	 57.19	0	2882031..2883539	-	502	158522403	-	Dole_2392	-	histidine kinase
2387	 63.86	+1	2883670..2886129	-	819	158522404	-	Dole_2393	-	pyruvate, water dikinase
2388	 55.12	0	2886165..2886545	-	126	158522405	-	Dole_2394	-	response regulator receiver protein
2389	 60.49	0	2886577..2887548	-	323	158522406	-	Dole_2395	-	hypothetical protein
2390	 62.14	0	2887597..2888016	-	139	158522407	-	Dole_2396	-	response regulator receiver protein
2391	 59.78	0	2888109..2888921	-	270	158522408	-	Dole_2397	-	hypothetical protein
2392	 60.66	0	2888956..2889771	-	271	158522409	-	Dole_2398	-	response regulator receiver protein
2393	 62.12	0	2889799..2891625	-	608	158522410	-	Dole_2399	-	TrkA domain-containing protein
2394	 58.61	0	2891688..2892134	-	148	158522411	-	Dole_2400	-	hypothetical protein
2395	 63.19	+1	2892349..2893698	-	449	158522412	-	Dole_2401	-	two component, sigma54 specific, Fis family transcriptional regulator
2396	 56.67	0	2893793..2894152	-	119	158522413	-	Dole_2402	-	hypothetical protein
2397	 58.08	0	2894180..2894470	-	96	158522414	-	Dole_2403	-	GntR family transcriptional regulator
2398	 59.06	0	2894699..2896000	+	433	158522415	-	Dole_2404	-	glucose-methanol-choline oxidoreductase
2399	 58.37	0	2896051..2896797	-	248	158522416	-	Dole_2405	-	glycosyl transferase family protein
2400	 62.01	0	2897208..2898344	+	378	158522417	-	Dole_2406	-	hypothetical protein
2401	 55.93	0	2898358..2899773	-	471	158522418	-	Dole_2407	-	radical SAM domain-containing protein
2402	 56.48	0	2899888..2901468	-	526	158522419	-	Dole_2408	-	hypothetical protein
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.