version 1.0
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167 3265 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2202 57.85 0 2680397..2681224 - 275 158522219 - Dole_2208 - Tol-Pal system YbgF 2203 57.33 0 2681374..2681919 - 181 158522220 - Dole_2209 - peptidoglycan-associated lipoprotein 2204 59.61 0 2681946..2683262 - 438 158522221 - Dole_2210 - beta-propeller repeat-containing to-pal system protein TolB 2205 61.09 0 2683291..2684115 - 274 158522222 - Dole_2211 - TonB family protein 2206 58.39 0 2684159..2684581 - 140 158522223 - Dole_2212 - biopolymer transport TolR 2207 57.95 0 2684578..2685300 - 240 158522224 - Dole_2213 - Tol-Pal system TolQ 2208 55.99 0 2685615..2687543 - 642 158522225 - Dole_2214 - heat shock protein 90 2209 62.70 +1 2687919..2689103 - 394 158522226 - Dole_2215 - hypothetical protein 2210 60.96 0 2689113..2690252 - 379 158522227 - Dole_2216 - peptidase T-like protein 2211 55.70 0 2690624..2691298 + 224 158522228 - Dole_2217 - phosphatidylserine decarboxylase 2212 58.57 0 2691295..2692134 + 279 158522229 - Dole_2218 - CDP-diacylglycerol--serine O-phosphatidyltransferase 2213 59.46 0 2692232..2693299 + 355 158522230 - Dole_2219 - 3-isopropylmalate dehydrogenase 2214 57.67 0 2693320..2694342 + 340 158522231 - Dole_2220 - aspartate-semialdehyde dehydrogenase 2215 58.38 0 2694378..2694872 + 164 158522232 - Dole_2221 - transcription elongation factor GreA 2216 60.66 0 2694905..2695270 + 121 158522233 - Dole_2222 - DNA-directed RNA polymerase, omega subunit 2217 57.61 0 2695227..2696021 + 264 158522234 - Dole_2223 - PP-loop domain-containing protein 2218 55.04 0 2696128..2696910 + 260 158522235 - Dole_2224 - hypothetical protein 2219 59.25 0 2696900..2698207 - 435 158522236 - Dole_2225 - peptidase S13 D-Ala-D-Ala carboxypeptidase C 2220 61.34 0 2698194..2699621 - 475 158522237 - Dole_2226 - putative aminopeptidase 1 2221 60.09 0 2699805..2700245 - 146 158522238 - Dole_2227 - D-tyrosyl-tRNA(Tyr) deacylase 2222 59.56 0 2700331..2700780 - 149 158522239 - Dole_2228 - 3-dehydroquinate dehydratase, type II 2223 62.42 +1 2700789..2701448 - 219 158522240 - Dole_2229 - ribulose-phosphate 3-epimerase 2224 59.77 0 2701491..2702462 - 323 158522241 - Dole_2230 - PASTA domain-containing protein 2225 62.33 0 2702455..2703861 - 468 158522242 - Dole_2231 - sun protein 2226 63.80 +1 2703854..2704795 - 313 158522243 - Dole_2232 - methionyl-tRNA formyltransferase 2227 59.58 0 2704780..2705301 - 173 158522244 - Dole_2233 - peptide deformylase 2228 58.60 0 2705345..2706298 - 317 158522245 - Dole_2234 - riboflavin biosynthesis protein RibF 2229 53.78 0 2706627..2706983 - 118 158522246 - Dole_2235 - response regulator receiver protein 2230 58.85 0 2707311..2708897 + 528 158522247 - Dole_2236 - N-6 DNA methylase 2231 50.20 -1 2708897..2710135 + 412 158522248 - Dole_2237 - restriction modification system DNA specificity subunit 2232 53.52 0 2710132..2712246 + 704 158522249 - Dole_2238 - hypothetical protein 2233 57.50 0 2712243..2715383 + 1046 158522250 - Dole_2239 - HsdR family type I site-specific deoxyribonuclease 2234 48.95 -1 2715473..2715997 + 174 158522251 - Dole_2240 - hypothetical protein 2235 43.15 -2 2716097..2716432 + 111 158522252 - Dole_2241 - addiction module killer protein 2236 38.33 -2 2716429..2716728 + 99 158522253 - Dole_2242 - putative transcriptional regulator 2237 61.24 0 2716853..2717995 + 380 158522254 - Dole_2243 - aminotransferase class V 2238 46.53 -1 2718022..2718468 + 148 158522255 - Dole_2244 - hypothetical protein 2239 55.13 0 2718534..2719799 + 421 158522256 - Dole_2245 - CDP-alcohol phosphatidyltransferase 2240 49.32 -1 2720233..2722527 + 764 158522257 - Dole_2246 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 2241 59.19 0 2722631..2723914 - 427 158522258 - Dole_2247 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2242 64.36 +1 2724195..2725019 + 274 158522259 - Dole_2248 - enoyl-CoA hydratase/isomerase 2243 57.94 0 2725054..2726142 + 362 158522260 - Dole_2249 - hypothetical protein 2244 60.05 0 2726733..2728349 + 538 158522261 - Dole_2250 - cytochrome c class III 2245 62.24 0 2728370..2729431 + 353 158522262 - Dole_2251 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2246 60.38 0 2729431..2730639 + 402 158522263 - Dole_2252 - polysulphide reductase NrfD 2247 49.63 -1 2730684..2730818 + 44 158522264 - Dole_2253 - hypothetical protein 2248 57.08 0 2730882..2731559 + 225 158522265 - Dole_2254 - hmc operon protein 5 2249 60.09 0 2731615..2732997 + 460 158522266 - Dole_2255 - hypothetical protein 2250 59.55 0 2733076..2734002 + 308 158522267 - Dole_2256 - UspA domain-containing protein 2251 53.72 0 2734034..2734396 + 120 158522268 - Dole_2257 - response regulator receiver protein 2252 61.50 0 2734386..2735972 + 528 158522269 - Dole_2258 - multi-sensor signal transduction histidine kinase 2253 60.00 0 2736331..2736795 + 154 158522270 - Dole_2259 - BadM/Rrf2 family transcriptional regulator 2254 58.30 0 2736850..2737554 + 234 158522271 - Dole_2260 - beta-lactamase domain-containing protein 2255 58.45 0 2737665..2738504 + 279 158522272 - Dole_2261 - rhodanese domain-containing protein 2256 61.10 0 2738505..2739617 + 370 158522273 - Dole_2262 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2257 57.30 0 2739619..2739981 + 120 158522274 - Dole_2263 - hypothetical protein 2258 58.79 0 2740103..2740813 + 236 158522275 - Dole_2264 - putative GAF sensor protein 2259 58.68 0 2740978..2742279 - 433 158522276 - Dole_2265 - XRE family transcriptional regulator 2260 60.39 0 2742607..2744262 + 551 158522277 - Dole_2266 - ferredoxin-dependent glutamate synthase 2261 32.88 -2 2744658..2745095 + 145 158522278 - Dole_2267 - hypothetical protein 2262 35.02 -2 2745129..2745722 + 197 158522279 - Dole_2268 - hypothetical protein 2263 57.47 0 2746162..2747499 + 445 158522280 - Dole_2269 - sodium:neurotransmitter symporter 2264 48.00 -1 2747763..2747987 + 74 158522281 - Dole_2270 - hypothetical protein 2265 50.52 -1 2747984..2748274 + 96 158522282 - Dole_2271 - hypothetical protein 2266 53.82 0 2748401..2750572 - 723 158522283 - Dole_2272 - glutamine synthetase catalytic region 2267 56.91 0 2751034..2752365 + 443 158522284 - Dole_2273 - glutamine synthetase, type I 2268 57.56 0 2752960..2754090 + 376 158522285 - Dole_2274 - glutamate synthase (NADPH) 2269 61.90 0 2754054..2755688 + 544 158522286 - Dole_2275 - ferredoxin-dependent glutamate synthase 2270 63.71 +1 2755763..2758093 + 776 158522287 - Dole_2276 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2271 47.67 -1 2758339..2758896 + 185 158522288 - Dole_2277 - hypothetical protein 2272 58.77 0 2759173..2761680 - 835 158522289 - Dole_2278 - transport protein, putative 2273 52.12 0 2761680..2762291 - 203 158522290 - Dole_2279 - toluene tolerance family protein 2274 56.65 0 2762295..2763242 - 315 158522291 - Dole_2280 - VacJ family lipoprotein 2275 59.23 0 2763515..2763958 + 147 158522292 - Dole_2281 - hypothetical protein 2276 59.68 0 2763985..2765115 + 376 158522293 - Dole_2282 - sodium ion-translocating decarboxylase, beta subunit 2277 53.76 0 2765269..2765826 + 185 158522294 - Dole_2283 - hypothetical protein 2278 58.91 0 2765871..2767160 + 429 158522295 - Dole_2284 - fructose/tagatose bisphosphate aldolase-like protein 2279 57.17 0 2767320..2767856 + 178 158522296 - Dole_2285 - NUDIX hydrolase 2280 61.91 0 2768045..2772799 - 1584 158522297 - Dole_2286 - YadA domain-containing protein 2281 54.69 0 2772844..2773419 - 191 158522298 - Dole_2287 - hypothetical protein 2282 62.16 0 2773717..2774871 - 384 158522299 - Dole_2288 - iron-containing alcohol dehydrogenase 2283 58.92 0 2774901..2776760 - 619 158522300 - Dole_2289 - aldehyde ferredoxin oxidoreductase 2284 59.58 0 2776794..2777978 - 394 158522301 - Dole_2290 - iron-containing alcohol dehydrogenase 2285 54.87 0 2778002..2778535 - 177 158522302 - Dole_2291 - hypothetical protein 2286 63.58 +1 2778808..2780721 + 637 158522303 - Dole_2292 - sodium/hydrogen exchanger 2287 60.69 0 2780737..2781522 - 261 158522304 - Dole_2293 - acetolactate decarboxylase 2288 63.32 +1 2781858..2783201 - 447 158522305 - Dole_2294 - pyridine nucleotide-disulphide oxidoreductase dimerisation region 2289 56.58 0 2783256..2783810 - 184 158522306 - Dole_2295 - hypothetical protein 2290 54.98 0 2783884..2784696 - 270 158522307 - Dole_2296 - MscS mechanosensitive ion channel 2291 59.01 0 2784800..2785936 - 378 158522308 - Dole_2297 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2292 58.87 0 2786129..2786500 - 123 158522309 - Dole_2298 - hypothetical protein 2293 59.54 0 2786616..2787962 + 448 158522310 - Dole_2299 - hypothetical protein 2294 59.77 0 2787973..2789421 - 482 158522311 - Dole_2300 - hypothetical protein 2295 58.48 0 2789567..2790580 - 337 158522312 - Dole_2301 - hypothetical protein 2296 58.51 0 2790600..2791433 - 277 158522313 - Dole_2302 - hypothetical protein 2297 56.46 0 2791653..2792240 - 195 158522314 - Dole_2303 - ribonuclease H 2298 54.80 0 2792298..2792651 - 117 158522315 - Dole_2304 - ribosomal protein L19 2299 62.48 +1 2792717..2793289 - 190 158522316 - Dole_2305 - hypothetical protein 2300 61.90 0 2793276..2794115 - 279 158522317 - Dole_2306 - tRNA (guanine-N1)-methyltransferase 2301 59.26 0 2794397..2794909 - 170 158522318 - Dole_2307 - 16S rRNA processing protein RimM 56.47 MEAN 5.93 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0