IslandPathversion 1.0

IslandPath Analysis: Desulfococcus oleovorans Hxd3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 56.47 STD DEV: 5.93
Candidatus Desulfococcus oleovorans Hxd3, complete genome - 1..3944167
3265 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2199	 60.08	0	2678231..2679262	-	343	158522216	-	Dole_2205	-	Holliday junction DNA helicase B
2200	 61.00	0	2679259..2679876	-	205	158522217	-	Dole_2206	-	DNA recombination protein RuvA
2201	 55.35	0	2679860..2680345	-	161	158522218	-	Dole_2207	-	crossover junction endodeoxyribonuclease
2202	 57.85	0	2680397..2681224	-	275	158522219	-	Dole_2208	-	Tol-Pal system YbgF
2203	 57.33	0	2681374..2681919	-	181	158522220	-	Dole_2209	-	peptidoglycan-associated lipoprotein
2204	 59.61	0	2681946..2683262	-	438	158522221	-	Dole_2210	-	beta-propeller repeat-containing to-pal system protein TolB
2205	 61.09	0	2683291..2684115	-	274	158522222	-	Dole_2211	-	TonB family protein
2206	 58.39	0	2684159..2684581	-	140	158522223	-	Dole_2212	-	biopolymer transport TolR
2207	 57.95	0	2684578..2685300	-	240	158522224	-	Dole_2213	-	Tol-Pal system TolQ
2208	 55.99	0	2685615..2687543	-	642	158522225	-	Dole_2214	-	heat shock protein 90
2209	 62.70	+1	2687919..2689103	-	394	158522226	-	Dole_2215	-	hypothetical protein
2210	 60.96	0	2689113..2690252	-	379	158522227	-	Dole_2216	-	peptidase T-like protein
2211	 55.70	0	2690624..2691298	+	224	158522228	-	Dole_2217	-	phosphatidylserine decarboxylase
2212	 58.57	0	2691295..2692134	+	279	158522229	-	Dole_2218	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
2213	 59.46	0	2692232..2693299	+	355	158522230	-	Dole_2219	-	3-isopropylmalate dehydrogenase
2214	 57.67	0	2693320..2694342	+	340	158522231	-	Dole_2220	-	aspartate-semialdehyde dehydrogenase
2215	 58.38	0	2694378..2694872	+	164	158522232	-	Dole_2221	-	transcription elongation factor GreA
2216	 60.66	0	2694905..2695270	+	121	158522233	-	Dole_2222	-	DNA-directed RNA polymerase, omega subunit
2217	 57.61	0	2695227..2696021	+	264	158522234	-	Dole_2223	-	PP-loop domain-containing protein
2218	 55.04	0	2696128..2696910	+	260	158522235	-	Dole_2224	-	hypothetical protein
2219	 59.25	0	2696900..2698207	-	435	158522236	-	Dole_2225	-	peptidase S13 D-Ala-D-Ala carboxypeptidase C
2220	 61.34	0	2698194..2699621	-	475	158522237	-	Dole_2226	-	putative aminopeptidase 1
2221	 60.09	0	2699805..2700245	-	146	158522238	-	Dole_2227	-	D-tyrosyl-tRNA(Tyr) deacylase
2222	 59.56	0	2700331..2700780	-	149	158522239	-	Dole_2228	-	3-dehydroquinate dehydratase, type II
2223	 62.42	+1	2700789..2701448	-	219	158522240	-	Dole_2229	-	ribulose-phosphate 3-epimerase
2224	 59.77	0	2701491..2702462	-	323	158522241	-	Dole_2230	-	PASTA domain-containing protein
2225	 62.33	0	2702455..2703861	-	468	158522242	-	Dole_2231	-	sun protein
2226	 63.80	+1	2703854..2704795	-	313	158522243	-	Dole_2232	-	methionyl-tRNA formyltransferase
2227	 59.58	0	2704780..2705301	-	173	158522244	-	Dole_2233	-	peptide deformylase
2228	 58.60	0	2705345..2706298	-	317	158522245	-	Dole_2234	-	riboflavin biosynthesis protein RibF
2229	 53.78	0	2706627..2706983	-	118	158522246	-	Dole_2235	-	response regulator receiver protein
2230	 58.85	0	2707311..2708897	+	528	158522247	-	Dole_2236	-	N-6 DNA methylase
2231	 50.20	-1	2708897..2710135	+	412	158522248	-	Dole_2237	-	restriction modification system DNA specificity subunit
2232	 53.52	0	2710132..2712246	+	704	158522249	-	Dole_2238	-	hypothetical protein
2233	 57.50	0	2712243..2715383	+	1046	158522250	-	Dole_2239	-	HsdR family type I site-specific deoxyribonuclease
2234	 48.95	-1	2715473..2715997	+	174	158522251	-	Dole_2240	-	hypothetical protein
2235	 43.15	-2	2716097..2716432	+	111	158522252	-	Dole_2241	-	addiction module killer protein
2236	 38.33	-2	2716429..2716728	+	99	158522253	-	Dole_2242	-	putative transcriptional regulator
2237	 61.24	0	2716853..2717995	+	380	158522254	-	Dole_2243	-	aminotransferase class V
2238	 46.53	-1	2718022..2718468	+	148	158522255	-	Dole_2244	-	hypothetical protein
2239	 55.13	0	2718534..2719799	+	421	158522256	-	Dole_2245	-	CDP-alcohol phosphatidyltransferase
2240	 49.32	-1	2720233..2722527	+	764	158522257	-	Dole_2246	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
2241	 59.19	0	2722631..2723914	-	427	158522258	-	Dole_2247	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2242	 64.36	+1	2724195..2725019	+	274	158522259	-	Dole_2248	-	enoyl-CoA hydratase/isomerase
2243	 57.94	0	2725054..2726142	+	362	158522260	-	Dole_2249	-	hypothetical protein
2244	 60.05	0	2726733..2728349	+	538	158522261	-	Dole_2250	-	cytochrome c class III
2245	 62.24	0	2728370..2729431	+	353	158522262	-	Dole_2251	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2246	 60.38	0	2729431..2730639	+	402	158522263	-	Dole_2252	-	polysulphide reductase NrfD
2247	 49.63	-1	2730684..2730818	+	44	158522264	-	Dole_2253	-	hypothetical protein
2248	 57.08	0	2730882..2731559	+	225	158522265	-	Dole_2254	-	hmc operon protein 5
2249	 60.09	0	2731615..2732997	+	460	158522266	-	Dole_2255	-	hypothetical protein
2250	 59.55	0	2733076..2734002	+	308	158522267	-	Dole_2256	-	UspA domain-containing protein
2251	 53.72	0	2734034..2734396	+	120	158522268	-	Dole_2257	-	response regulator receiver protein
2252	 61.50	0	2734386..2735972	+	528	158522269	-	Dole_2258	-	multi-sensor signal transduction histidine kinase
2253	 60.00	0	2736331..2736795	+	154	158522270	-	Dole_2259	-	BadM/Rrf2 family transcriptional regulator
2254	 58.30	0	2736850..2737554	+	234	158522271	-	Dole_2260	-	beta-lactamase domain-containing protein
2255	 58.45	0	2737665..2738504	+	279	158522272	-	Dole_2261	-	rhodanese domain-containing protein
2256	 61.10	0	2738505..2739617	+	370	158522273	-	Dole_2262	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2257	 57.30	0	2739619..2739981	+	120	158522274	-	Dole_2263	-	hypothetical protein
2258	 58.79	0	2740103..2740813	+	236	158522275	-	Dole_2264	-	putative GAF sensor protein
2259	 58.68	0	2740978..2742279	-	433	158522276	-	Dole_2265	-	XRE family transcriptional regulator
2260	 60.39	0	2742607..2744262	+	551	158522277	-	Dole_2266	-	ferredoxin-dependent glutamate synthase
2261	 32.88	-2	2744658..2745095	+	145	158522278	-	Dole_2267	-	hypothetical protein
2262	 35.02	-2	2745129..2745722	+	197	158522279	-	Dole_2268	-	hypothetical protein
2263	 57.47	0	2746162..2747499	+	445	158522280	-	Dole_2269	-	sodium:neurotransmitter symporter
2264	 48.00	-1	2747763..2747987	+	74	158522281	-	Dole_2270	-	hypothetical protein
2265	 50.52	-1	2747984..2748274	+	96	158522282	-	Dole_2271	-	hypothetical protein
2266	 53.82	0	2748401..2750572	-	723	158522283	-	Dole_2272	-	glutamine synthetase catalytic region
2267	 56.91	0	2751034..2752365	+	443	158522284	-	Dole_2273	-	glutamine synthetase, type I
2268	 57.56	0	2752960..2754090	+	376	158522285	-	Dole_2274	-	glutamate synthase (NADPH)
2269	 61.90	0	2754054..2755688	+	544	158522286	-	Dole_2275	-	ferredoxin-dependent glutamate synthase
2270	 63.71	+1	2755763..2758093	+	776	158522287	-	Dole_2276	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2271	 47.67	-1	2758339..2758896	+	185	158522288	-	Dole_2277	-	hypothetical protein
2272	 58.77	0	2759173..2761680	-	835	158522289	-	Dole_2278	-	transport protein, putative
2273	 52.12	0	2761680..2762291	-	203	158522290	-	Dole_2279	-	toluene tolerance family protein
2274	 56.65	0	2762295..2763242	-	315	158522291	-	Dole_2280	-	VacJ family lipoprotein
2275	 59.23	0	2763515..2763958	+	147	158522292	-	Dole_2281	-	hypothetical protein
2276	 59.68	0	2763985..2765115	+	376	158522293	-	Dole_2282	-	sodium ion-translocating decarboxylase, beta subunit
2277	 53.76	0	2765269..2765826	+	185	158522294	-	Dole_2283	-	hypothetical protein
2278	 58.91	0	2765871..2767160	+	429	158522295	-	Dole_2284	-	fructose/tagatose bisphosphate aldolase-like protein
2279	 57.17	0	2767320..2767856	+	178	158522296	-	Dole_2285	-	NUDIX hydrolase
2280	 61.91	0	2768045..2772799	-	1584	158522297	-	Dole_2286	-	YadA domain-containing protein
2281	 54.69	0	2772844..2773419	-	191	158522298	-	Dole_2287	-	hypothetical protein
2282	 62.16	0	2773717..2774871	-	384	158522299	-	Dole_2288	-	iron-containing alcohol dehydrogenase
2283	 58.92	0	2774901..2776760	-	619	158522300	-	Dole_2289	-	aldehyde ferredoxin oxidoreductase
2284	 59.58	0	2776794..2777978	-	394	158522301	-	Dole_2290	-	iron-containing alcohol dehydrogenase
2285	 54.87	0	2778002..2778535	-	177	158522302	-	Dole_2291	-	hypothetical protein
2286	 63.58	+1	2778808..2780721	+	637	158522303	-	Dole_2292	-	sodium/hydrogen exchanger
2287	 60.69	0	2780737..2781522	-	261	158522304	-	Dole_2293	-	acetolactate decarboxylase
2288	 63.32	+1	2781858..2783201	-	447	158522305	-	Dole_2294	-	pyridine nucleotide-disulphide oxidoreductase dimerisation region
2289	 56.58	0	2783256..2783810	-	184	158522306	-	Dole_2295	-	hypothetical protein
2290	 54.98	0	2783884..2784696	-	270	158522307	-	Dole_2296	-	MscS mechanosensitive ion channel
2291	 59.01	0	2784800..2785936	-	378	158522308	-	Dole_2297	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2292	 58.87	0	2786129..2786500	-	123	158522309	-	Dole_2298	-	hypothetical protein
2293	 59.54	0	2786616..2787962	+	448	158522310	-	Dole_2299	-	hypothetical protein
2294	 59.77	0	2787973..2789421	-	482	158522311	-	Dole_2300	-	hypothetical protein
2295	 58.48	0	2789567..2790580	-	337	158522312	-	Dole_2301	-	hypothetical protein
2296	 58.51	0	2790600..2791433	-	277	158522313	-	Dole_2302	-	hypothetical protein
2297	 56.46	0	2791653..2792240	-	195	158522314	-	Dole_2303	-	ribonuclease H
2298	 54.80	0	2792298..2792651	-	117	158522315	-	Dole_2304	-	ribosomal protein L19
56.47	MEAN

5.93	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.